Wall clock time and date at job start Mon Mar 30 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46835 * 2 1 4 4 H 1.09002 * 109.54503 * 55.11903 * 3 2 1 5 5 N 1.47073 * 109.51023 * 295.00611 * 3 2 1 6 6 C 1.47072 * 110.36202 * 183.11156 * 5 3 2 7 7 C 1.50650 * 109.24626 * 56.95377 * 6 5 3 8 8 O 1.21227 * 119.67550 * 151.18841 * 7 6 5 9 9 N 1.34451 * 120.65583 * 331.16296 * 7 6 5 10 10 C 1.46503 * 119.32042 * 180.47532 * 9 7 6 11 11 C 1.50700 * 109.47155 * 89.99738 * 10 9 7 12 12 O 1.21291 * 120.00243 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99856 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00122 * 180.02562 * 13 11 10 15 15 H 1.07992 * 119.99740 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99873 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00267 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47216 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47018 * 119.99705 * 18 16 14 21 21 H 1.48501 * 109.46840 * 239.99178 * 18 16 14 22 22 C 1.34450 * 121.36406 * 0.45097 * 9 7 6 23 23 O 1.21223 * 119.67263 * 179.56781 * 22 9 7 24 24 H 1.08991 * 109.47524 * 59.99612 * 1 2 3 25 25 H 1.09003 * 109.46474 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46981 * 299.99100 * 1 2 3 27 27 H 1.09004 * 109.46981 * 240.00900 * 2 1 3 28 28 H 1.08991 * 109.47524 * 120.00388 * 2 1 3 29 29 H 1.00901 * 110.99964 * 59.61410 * 5 3 2 30 30 H 1.08996 * 109.50570 * 176.88492 * 6 5 3 31 31 H 1.08999 * 109.50711 * 297.02360 * 6 5 3 32 32 H 1.08993 * 109.47006 * 210.00424 * 10 9 7 33 33 H 1.09004 * 109.46853 * 330.00144 * 10 9 7 34 34 H 0.97000 * 120.00109 * 0.02562 * 13 11 10 35 35 H 0.96999 * 120.00355 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6077 1.9822 0.8427 5 7 1.6512 2.1010 -1.2563 6 6 2.1956 3.4662 -1.3084 7 6 3.6930 3.4100 -1.1523 8 8 4.3821 4.2675 -1.6616 9 7 4.2726 2.4185 -0.4533 10 6 5.7306 2.3981 -0.3112 11 6 6.1257 3.1662 0.9237 12 8 5.2733 3.6797 1.6172 13 7 7.4262 3.2817 1.2581 14 6 7.7857 3.9800 2.3818 15 1 7.0268 4.4372 2.9992 16 6 9.1265 4.0995 2.7261 17 7 10.0500 3.5428 1.9751 18 14 9.6163 5.0504 4.2577 19 1 8.3980 5.5753 4.9251 20 1 10.3421 4.1495 5.1887 21 1 10.4982 6.1827 3.8763 22 6 3.5418 1.4455 0.1185 23 8 4.0969 0.5618 0.7353 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.6482 2.1073 -1.3659 30 1 1.9464 3.9211 -2.2670 31 1 1.7675 4.0599 -0.5007 32 1 6.0726 1.3671 -0.2228 33 1 6.1874 2.8587 -1.1872 34 1 8.1079 2.8708 0.7037 35 1 10.9860 3.6259 2.2157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097322434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:24 Heat of formation + Delta-G solvation = -96.709367 kcal Electronic energy + Delta-G solvation = -21032.341622 eV Core-core repulsion = 17644.759393 eV Total energy + Delta-G solvation = -3387.582229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51843 -38.71993 -38.11856 -36.80384 -34.92023 -33.89987 -32.86483 -31.30196 -28.68238 -28.15377 -25.60569 -24.32602 -23.37359 -21.64067 -19.64474 -18.38168 -17.92851 -17.86256 -17.34909 -16.50493 -15.67222 -15.47990 -15.28104 -14.61980 -14.49180 -14.20184 -13.99721 -13.86404 -13.75972 -13.43218 -12.97202 -12.55827 -12.43230 -12.12403 -11.58256 -11.55049 -11.35763 -11.13881 -11.05246 -10.39771 -10.34903 -10.23309 -10.00072 -9.76631 -9.56213 -9.10299 -8.39267 -8.01290 -6.43804 -3.84980 1.74194 2.60703 2.87397 3.15457 3.26427 3.33967 3.70025 3.78145 3.90224 4.16865 4.39452 4.57979 4.80183 4.93162 4.98629 5.08432 5.18835 5.21502 5.28052 5.44481 5.63555 5.71252 5.76702 5.80360 5.81898 6.04544 6.18283 6.23855 6.70213 7.15556 7.53399 7.64526 7.91280 8.02522 8.54997 9.13269 9.47608 9.97134 10.73632 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.004657 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.930139 B = 6011.445629 C = 6363.146678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C 0.065 3.935 4 H 0.086 0.914 5 N -0.672 5.672 6 C 0.035 3.965 7 C 0.533 3.467 8 O -0.494 6.494 9 N -0.538 5.538 10 C 0.083 3.917 11 C 0.433 3.567 12 O -0.594 6.594 13 N -0.552 5.552 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.536 3.464 23 O -0.490 6.490 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.362 0.638 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.394 0.606 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -5.491 -7.583 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.048 4.048 4 H 0.104 0.896 5 N -0.309 5.309 6 C -0.096 4.096 7 C 0.321 3.679 8 O -0.366 6.366 9 N -0.279 5.279 10 C -0.042 4.042 11 C 0.218 3.782 12 O -0.480 6.480 13 N -0.188 5.188 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.759 3.241 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.325 3.675 23 O -0.360 6.360 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.183 0.817 30 H 0.144 0.856 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.228 0.772 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.366 -5.434 -7.401 18.766 hybrid contribution 0.282 0.785 1.087 1.371 sum -16.084 -4.649 -6.313 17.893 Atomic orbital electron populations 1.21804 0.94966 1.02543 1.01749 1.21445 0.95984 0.92567 1.04498 1.21892 0.91187 0.98890 0.92830 0.89602 1.60910 1.18788 1.16474 1.34774 1.22340 0.90580 0.91228 1.05501 1.20684 0.90809 0.80015 0.76372 1.90753 1.64578 1.36044 1.45197 1.46172 1.09205 1.24842 1.47711 1.21505 0.78796 1.03551 1.00378 1.19841 0.84031 0.86408 0.87966 1.90495 1.49970 1.52794 1.54715 1.41759 1.05145 1.47212 1.24642 1.19750 0.92481 1.28926 1.01794 0.87861 1.25291 0.95321 0.97819 0.99348 1.69619 1.01306 1.44202 1.38690 0.85769 0.78695 0.78951 0.80728 1.19235 1.20625 1.20631 1.20605 0.89525 0.80482 0.76919 1.90727 1.72525 1.35358 1.37435 0.92353 0.91837 0.92572 0.90283 0.89551 0.81665 0.85604 0.90016 0.87198 0.87193 0.77206 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.68 37.16 0.36 -0.60 16 2 C -0.11 -1.00 5.32 -26.73 -0.14 -1.14 16 3 C 0.06 0.73 2.72 -68.79 -0.19 0.54 16 4 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 5 N -0.67 -6.06 6.58 -109.02 -0.72 -6.77 16 6 C 0.04 0.37 6.71 -4.91 -0.03 0.34 16 7 C 0.53 8.85 7.61 -11.16 -0.08 8.77 16 8 O -0.49 -9.79 16.55 5.60 0.09 -9.70 16 9 N -0.54 -9.75 2.03 -116.85 -0.24 -9.98 16 10 C 0.08 1.66 5.52 -5.19 -0.03 1.63 16 11 C 0.43 11.00 7.84 -10.99 -0.09 10.92 16 12 O -0.59 -16.94 16.01 5.55 0.09 -16.85 16 13 N -0.55 -14.76 5.29 -10.97 -0.06 -14.82 16 14 C -0.30 -8.67 9.68 -14.93 -0.14 -8.81 16 15 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 16 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 18 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.54 8.98 7.29 -11.16 -0.08 8.90 16 23 O -0.49 -9.57 15.53 5.61 0.09 -9.48 16 24 H 0.06 0.29 6.76 -51.93 -0.35 -0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.92 7.67 -51.93 -0.40 0.52 16 29 H 0.36 2.06 7.20 -39.29 -0.28 1.78 16 30 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 2.04 7.34 -51.93 -0.38 1.66 16 33 H 0.11 2.05 7.34 -51.93 -0.38 1.67 16 34 H 0.39 10.01 7.90 -40.82 -0.32 9.69 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -35.74 302.33 -5.18 -40.91 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.16 Total: 8.75 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: -0.52 Total: 21.11 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.29 Total: -55.77 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: 0.27 Total: -36.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.74 -5.18 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097322434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.797 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds