Wall clock time and date at job start Mon Mar 30 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46835 * 2 1 4 4 H 1.09002 * 109.54503 * 55.11903 * 3 2 1 5 5 N 1.47073 * 109.51023 * 295.00611 * 3 2 1 6 6 C 1.47072 * 110.36202 * 183.11156 * 5 3 2 7 7 C 1.50650 * 109.24626 * 56.95377 * 6 5 3 8 8 O 1.21227 * 119.67550 * 151.18841 * 7 6 5 9 9 N 1.34451 * 120.65583 * 331.16296 * 7 6 5 10 10 C 1.46503 * 119.32042 * 180.47532 * 9 7 6 11 11 C 1.50700 * 109.47155 * 89.99738 * 10 9 7 12 12 O 1.21291 * 120.00243 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99856 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00122 * 180.02562 * 13 11 10 15 15 H 1.07992 * 119.99740 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99873 * 180.02562 * 14 13 11 17 17 N 1.31409 * 120.00267 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47216 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47018 * 119.99705 * 18 16 14 21 21 H 1.48501 * 109.46840 * 239.99178 * 18 16 14 22 22 C 1.34450 * 121.36406 * 0.45097 * 9 7 6 23 23 O 1.21223 * 119.67263 * 179.56781 * 22 9 7 24 24 H 1.08991 * 109.47524 * 59.99612 * 1 2 3 25 25 H 1.09003 * 109.46474 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46981 * 299.99100 * 1 2 3 27 27 H 1.09004 * 109.46981 * 240.00900 * 2 1 3 28 28 H 1.08991 * 109.47524 * 120.00388 * 2 1 3 29 29 H 1.00901 * 110.99964 * 59.61410 * 5 3 2 30 30 H 1.08996 * 109.50570 * 176.88492 * 6 5 3 31 31 H 1.08999 * 109.50711 * 297.02360 * 6 5 3 32 32 H 1.08993 * 109.47006 * 210.00424 * 10 9 7 33 33 H 1.09004 * 109.46853 * 330.00144 * 10 9 7 34 34 H 0.97000 * 120.00109 * 0.02562 * 13 11 10 35 35 H 0.96999 * 120.00355 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6077 1.9822 0.8427 5 7 1.6512 2.1010 -1.2563 6 6 2.1956 3.4662 -1.3084 7 6 3.6930 3.4100 -1.1523 8 8 4.3821 4.2675 -1.6616 9 7 4.2726 2.4185 -0.4533 10 6 5.7306 2.3981 -0.3112 11 6 6.1257 3.1662 0.9237 12 8 5.2733 3.6797 1.6172 13 7 7.4262 3.2817 1.2581 14 6 7.7857 3.9800 2.3818 15 1 7.0268 4.4372 2.9992 16 6 9.1265 4.0995 2.7261 17 7 10.0500 3.5428 1.9751 18 14 9.6163 5.0504 4.2577 19 1 8.3980 5.5753 4.9251 20 1 10.3421 4.1495 5.1887 21 1 10.4982 6.1827 3.8763 22 6 3.5418 1.4455 0.1185 23 8 4.0969 0.5618 0.7353 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.6482 2.1073 -1.3659 30 1 1.9464 3.9211 -2.2670 31 1 1.7675 4.0599 -0.5007 32 1 6.0726 1.3671 -0.2228 33 1 6.1874 2.8587 -1.1872 34 1 8.1079 2.8708 0.7037 35 1 10.9860 3.6259 2.2157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097322434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:23 Heat of formation + Delta-G solvation = -126.130658 kcal Electronic energy + Delta-G solvation = -21033.617424 eV Core-core repulsion = 17644.759393 eV Total energy + Delta-G solvation = -3388.858032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.82372 -40.13461 -39.99105 -37.85790 -36.45508 -35.90956 -33.70744 -33.41266 -30.24819 -29.03266 -27.15368 -25.84673 -24.60977 -22.59469 -21.46006 -20.18045 -19.42493 -19.05494 -18.62028 -18.20469 -17.22802 -16.53106 -16.41362 -16.38430 -15.79499 -15.77490 -15.68289 -15.49330 -14.99286 -14.60021 -14.22527 -13.79011 -13.61999 -13.38939 -13.32026 -12.92986 -12.78626 -12.52538 -12.16096 -12.06037 -11.79849 -11.63282 -11.62392 -11.37009 -11.31250 -10.37824 -10.15297 -9.87314 -8.55970 -6.06925 0.45476 1.29051 1.30561 1.38209 1.52982 1.66346 1.84228 2.24759 2.77900 2.83064 3.07711 3.09724 3.44284 3.74615 3.98056 4.04162 4.09994 4.16506 4.21382 4.38227 4.45530 4.49252 4.56798 4.87957 5.14930 5.22045 5.31215 5.34545 5.48009 5.84554 5.86669 6.17806 6.37192 6.41632 6.62826 6.98138 7.36241 7.89074 8.61517 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.004657 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.930139 B = 6011.445629 C = 6363.146678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C 0.074 3.926 4 H 0.100 0.900 5 N -0.661 5.661 6 C 0.047 3.953 7 C 0.521 3.479 8 O -0.535 6.535 9 N -0.550 5.550 10 C 0.090 3.910 11 C 0.427 3.573 12 O -0.630 6.630 13 N -0.560 5.560 14 C -0.340 4.340 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.915 5.915 18 Si 0.999 3.001 19 H -0.273 1.273 20 H -0.267 1.267 21 H -0.267 1.267 22 C 0.526 3.474 23 O -0.528 6.528 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.387 0.613 30 H 0.158 0.842 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.398 0.602 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.949 -5.369 -7.990 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.039 4.039 4 H 0.117 0.883 5 N -0.302 5.302 6 C -0.085 4.085 7 C 0.313 3.687 8 O -0.409 6.409 9 N -0.290 5.290 10 C -0.035 4.035 11 C 0.213 3.787 12 O -0.518 6.518 13 N -0.195 5.195 14 C -0.469 4.469 15 H 0.097 0.903 16 C -0.210 4.210 17 N -0.555 5.555 18 Si 0.822 3.178 19 H -0.198 1.198 20 H -0.192 1.192 21 H -0.192 1.192 22 C 0.317 3.683 23 O -0.401 6.401 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.213 0.787 30 H 0.176 0.824 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.232 0.768 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.155 -5.336 -7.845 20.484 hybrid contribution 0.850 0.722 1.187 1.629 sum -17.304 -4.614 -6.658 19.106 Atomic orbital electron populations 1.21781 0.92053 1.03510 1.03022 1.21429 0.98299 0.90879 1.03449 1.21919 0.86892 1.00662 0.94405 0.88267 1.60841 1.20640 1.15466 1.33213 1.22421 0.85781 0.92345 1.07915 1.21964 0.93339 0.78590 0.74803 1.90726 1.66105 1.37318 1.46744 1.46526 1.08281 1.25969 1.48273 1.21292 0.81274 1.03134 0.97836 1.20740 0.83224 0.85744 0.88947 1.90445 1.50751 1.54237 1.56345 1.41830 1.05884 1.47363 1.24471 1.19723 0.92919 1.31130 1.03156 0.90271 1.26159 0.94573 0.98083 1.02199 1.69678 1.01873 1.44175 1.39797 0.84792 0.78168 0.77961 0.76879 1.19777 1.19175 1.19166 1.21792 0.91779 0.79248 0.75526 1.90698 1.73743 1.36668 1.38994 0.90334 0.91134 0.91980 0.90667 0.91455 0.78655 0.82443 0.88044 0.86132 0.86039 0.76771 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.68 71.98 0.70 -0.66 16 2 C -0.10 -1.73 5.32 30.60 0.16 -1.57 16 3 C 0.07 1.52 2.72 44.12 0.12 1.64 16 4 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 5 N -0.66 -9.63 6.58 -498.82 -3.28 -12.91 16 6 C 0.05 0.84 6.71 85.51 0.57 1.41 16 7 C 0.52 16.95 7.61 87.69 0.67 17.62 16 8 O -0.54 -21.23 16.55 -2.87 -0.05 -21.28 16 9 N -0.55 -19.99 2.03 -760.79 -1.55 -21.54 16 10 C 0.09 3.73 5.52 85.63 0.47 4.20 16 11 C 0.43 22.53 7.84 87.66 0.69 23.21 16 12 O -0.63 -37.24 16.01 -3.06 -0.05 -37.29 16 13 N -0.56 -31.05 5.29 -306.99 -1.62 -32.68 16 14 C -0.34 -20.29 9.68 84.04 0.81 -19.48 16 15 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 16 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 17 N -0.92 -50.85 13.05 21.66 0.28 -50.57 16 18 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 C 0.53 17.55 7.29 87.69 0.64 18.19 16 23 O -0.53 -21.15 15.53 -2.85 -0.04 -21.19 16 24 H 0.08 0.42 6.76 -2.39 -0.02 0.40 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.41 7.67 -2.39 -0.02 1.39 16 29 H 0.39 2.53 7.20 -89.69 -0.65 1.89 16 30 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 4.64 7.34 -2.39 -0.02 4.63 16 33 H 0.12 4.67 7.34 -2.39 -0.02 4.65 16 34 H 0.40 20.95 7.90 -92.71 -0.73 20.22 16 35 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -80.50 302.33 0.78 -79.72 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.23 Total: 27.20 kcal Atomic # 6 Polarization: 39.21 SS G_CDS: 5.30 Total: 44.51 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.17 Total: -117.69 kcal Atomic # 8 Polarization: -79.62 SS G_CDS: -0.14 Total: -79.76 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -80.50 0.78 -79.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097322434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.412 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds