Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.56483 * 2 1 4 4 C 1.50438 * 109.56782 * 239.64152 * 2 1 3 5 5 O 1.21280 * 118.48488 * 47.45033 * 4 2 1 6 6 N 1.33327 * 123.00228 * 227.42853 * 4 2 1 7 7 C 1.45647 * 124.63513 * 4.40687 * 6 4 2 8 8 C 1.52990 * 110.73580 * 338.02613 * 7 6 4 9 9 N 1.47056 * 109.56659 * 120.23573 * 2 1 3 10 10 C 1.34775 * 121.35119 * 342.58569 * 9 2 1 11 11 O 1.21434 * 120.00369 * 352.12529 * 10 9 2 12 12 C 1.48829 * 119.99656 * 172.13222 * 10 9 2 13 13 O 1.21506 * 120.00328 * 353.32221 * 12 10 9 14 14 N 1.34783 * 120.00173 * 173.32558 * 12 10 9 15 15 C 1.36114 * 120.00444 * 179.97438 * 14 12 10 16 16 H 1.08008 * 119.99790 * 359.97438 * 15 14 12 17 17 C 1.39588 * 120.00209 * 179.97438 * 15 14 12 18 18 N 1.31011 * 120.00048 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99906 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47298 * 90.00168 * 19 17 15 21 21 H 1.48499 * 109.47300 * 210.00201 * 19 17 15 22 22 H 1.48501 * 109.47400 * 330.00286 * 19 17 15 23 23 H 1.08996 * 109.47387 * 315.67548 * 1 2 3 24 24 H 1.08998 * 109.47040 * 75.67345 * 1 2 3 25 25 H 1.09000 * 109.46811 * 195.67352 * 1 2 3 26 26 H 1.09003 * 109.46881 * 180.23562 * 3 2 1 27 27 H 1.08994 * 109.47548 * 300.23511 * 3 2 1 28 28 H 1.08999 * 109.47447 * 60.23754 * 3 2 1 29 29 H 0.97004 * 117.66539 * 184.35829 * 6 4 2 30 30 H 1.08997 * 109.21642 * 217.71729 * 7 6 4 31 31 H 1.08995 * 109.21745 * 98.33697 * 7 6 4 32 32 H 1.08997 * 109.72253 * 166.41710 * 8 7 6 33 33 H 1.08999 * 109.72315 * 287.03112 * 8 7 6 34 34 H 0.97008 * 119.99453 * 0.02562 * 14 12 10 35 35 H 0.96997 * 120.00193 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4416 0.0000 4 6 2.0339 -0.7164 -1.2231 5 8 1.5484 -0.4363 -2.2986 6 7 2.9899 -1.6447 -1.1788 7 6 3.5987 -2.1481 0.0448 8 6 3.4252 -1.1464 1.1881 9 7 2.0225 -0.6978 1.1971 10 6 1.2226 -0.9181 2.2592 11 8 0.1176 -0.4163 2.3016 12 6 1.6936 -1.7763 3.3802 13 8 2.7463 -2.3757 3.2856 14 7 0.9524 -1.8887 4.5003 15 6 1.3829 -2.6740 5.5253 16 1 2.3183 -3.2074 5.4409 17 6 0.6155 -2.7900 6.6856 18 7 -0.5193 -2.1434 6.7878 19 14 1.2067 -3.8672 8.0925 20 1 2.0371 -3.0579 9.0204 21 1 0.0354 -4.4127 8.8243 22 1 2.0178 -4.9873 7.5514 23 1 -0.3634 0.7351 0.7180 24 1 -0.3633 0.2543 -0.9957 25 1 -0.3633 -0.9895 0.2776 26 1 3.1324 1.4398 -0.0042 27 1 1.6765 1.9573 -0.8878 28 1 1.6834 1.9548 0.8921 29 1 3.3013 -2.0111 -2.0212 30 1 4.6619 -2.3164 -0.1264 31 1 3.1259 -3.0911 0.3192 32 1 3.6638 -1.6265 2.1371 33 1 4.0842 -0.2924 1.0320 34 1 0.1118 -1.4105 4.5756 35 1 -1.0527 -2.2243 7.5938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104131800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -77.859794 kcal Electronic energy + Delta-G solvation = -21550.802340 eV Core-core repulsion = 18164.037490 eV Total energy + Delta-G solvation = -3386.764850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01034 -39.21529 -37.47200 -36.40713 -34.80201 -34.39282 -32.01153 -31.48727 -28.64137 -27.25248 -26.02710 -24.66161 -22.93631 -22.49697 -19.70348 -18.59596 -17.88657 -17.36062 -17.10394 -16.05681 -15.63228 -15.29410 -15.15724 -14.86724 -14.41955 -14.03321 -13.98789 -13.30847 -13.26586 -13.18565 -12.34454 -12.17742 -12.11371 -11.95993 -11.87264 -11.69171 -11.43244 -11.25838 -11.15624 -10.60824 -10.50592 -10.13881 -9.88480 -9.70678 -9.10426 -8.45020 -8.37573 -7.97420 -6.81096 -4.13620 2.26617 2.60142 2.89484 3.06891 3.10205 3.15224 3.31229 3.93047 4.09696 4.48377 4.66436 4.95885 5.00654 5.02754 5.11320 5.28208 5.36138 5.66360 5.67830 5.80841 5.92420 5.99113 6.08083 6.22482 6.30328 6.47882 6.70107 6.83842 7.17945 7.26406 7.52377 7.66024 8.14651 8.20667 8.46222 8.81380 9.15942 9.69196 10.32771 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.005127 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.139385 B = 5459.746478 C = 5944.879064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.157 3.843 3 C -0.146 4.146 4 C 0.523 3.477 5 O -0.551 6.551 6 N -0.717 5.717 7 C 0.098 3.902 8 C 0.048 3.952 9 N -0.595 5.595 10 C 0.521 3.479 11 O -0.533 6.533 12 C 0.388 3.612 13 O -0.589 6.589 14 N -0.487 5.487 15 C -0.307 4.307 16 H 0.116 0.884 17 C 0.033 3.967 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.090 0.910 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.395 0.605 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.179 0.821 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 2.280 -8.446 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 C -0.205 4.205 4 C 0.309 3.691 5 O -0.429 6.429 6 N -0.368 5.368 7 C -0.027 4.027 8 C -0.074 4.074 9 N -0.331 5.331 10 C 0.308 3.692 11 O -0.409 6.409 12 C 0.173 3.827 13 O -0.480 6.480 14 N -0.119 5.119 15 C -0.437 4.437 16 H 0.133 0.867 17 C -0.175 4.175 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.109 0.891 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.950 2.424 -8.637 10.765 hybrid contribution 0.024 -0.418 0.295 0.513 sum 5.974 2.006 -8.342 10.455 Atomic orbital electron populations 1.22086 0.89728 1.04634 1.02310 1.20741 0.97596 0.92696 0.82082 1.22061 1.01281 0.93465 1.03661 1.20241 0.78780 0.79281 0.90820 1.90720 1.57075 1.65187 1.29900 1.45486 1.39479 1.41205 1.10654 1.21817 0.98367 0.98515 0.83954 1.23431 0.81063 0.97773 1.05095 1.48086 1.12502 1.57562 1.14975 1.20546 0.84453 0.80970 0.83228 1.90710 1.21067 1.50096 1.79046 1.18850 0.88331 0.90405 0.85068 1.90145 1.24608 1.52685 1.80565 1.41592 1.20512 1.37885 1.11920 1.19932 1.07409 1.23573 0.92813 0.86665 1.25642 0.94990 0.97400 0.99438 1.69475 1.11914 1.39066 1.29474 0.85693 0.78467 0.79715 0.79549 1.19767 1.20442 1.18782 0.89101 0.91925 0.91826 0.92257 0.90669 0.90617 0.77013 0.89650 0.90746 0.80559 0.91928 0.75852 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.06 37.16 0.26 -1.93 16 2 C 0.16 2.50 0.97 -132.80 -0.13 2.37 16 3 C -0.15 -1.97 8.61 37.15 0.32 -1.65 16 4 C 0.52 8.28 6.61 -11.76 -0.08 8.20 16 5 O -0.55 -9.97 16.91 5.56 0.09 -9.87 16 6 N -0.72 -9.29 5.42 -61.34 -0.33 -9.62 16 7 C 0.10 1.19 7.34 -4.51 -0.03 1.16 16 8 C 0.05 0.70 6.09 -3.63 -0.02 0.68 16 9 N -0.59 -10.20 2.62 -159.97 -0.42 -10.62 16 10 C 0.52 10.71 7.33 -11.88 -0.09 10.63 16 11 O -0.53 -11.60 12.81 5.42 0.07 -11.53 16 12 C 0.39 8.91 7.70 -11.87 -0.09 8.82 16 13 O -0.59 -13.66 12.74 5.36 0.07 -13.59 16 14 N -0.49 -12.08 5.24 -11.59 -0.06 -12.14 16 15 C -0.31 -7.84 9.67 -15.15 -0.15 -7.98 16 16 H 0.12 2.97 7.15 -52.48 -0.38 2.60 16 17 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 18 N -0.86 -21.90 13.03 55.53 0.72 -21.18 16 19 Si 0.94 18.88 29.56 -169.99 -5.02 13.86 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H 0.09 1.56 6.64 -51.93 -0.34 1.22 16 24 H 0.06 0.99 7.40 -51.93 -0.38 0.61 16 25 H 0.06 1.18 7.08 -51.93 -0.37 0.81 16 26 H 0.06 0.73 7.51 -51.93 -0.39 0.34 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.40 4.30 8.79 -40.82 -0.36 3.95 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.18 3.01 4.14 -55.37 -0.23 2.78 16 33 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 34 H 0.41 10.25 7.37 -40.82 -0.30 9.95 16 35 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -28.65 291.02 -4.56 -33.21 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -3.97 Total: 16.08 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: -0.10 Total: 21.02 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.09 Total: -53.55 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: 0.23 Total: -34.99 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.65 -4.56 -33.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104131800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.653 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds