Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.56483 * 2 1 4 4 C 1.50438 * 109.56782 * 239.64152 * 2 1 3 5 5 O 1.21280 * 118.48488 * 47.45033 * 4 2 1 6 6 N 1.33327 * 123.00228 * 227.42853 * 4 2 1 7 7 C 1.45647 * 124.63513 * 4.40687 * 6 4 2 8 8 C 1.52990 * 110.73580 * 338.02613 * 7 6 4 9 9 N 1.47056 * 109.56659 * 120.23573 * 2 1 3 10 10 C 1.34775 * 121.35119 * 342.58569 * 9 2 1 11 11 O 1.21434 * 120.00369 * 352.12529 * 10 9 2 12 12 C 1.48829 * 119.99656 * 172.13222 * 10 9 2 13 13 O 1.21506 * 120.00328 * 353.32221 * 12 10 9 14 14 N 1.34783 * 120.00173 * 173.32558 * 12 10 9 15 15 C 1.36114 * 120.00444 * 179.97438 * 14 12 10 16 16 H 1.08008 * 119.99790 * 359.97438 * 15 14 12 17 17 C 1.39588 * 120.00209 * 179.97438 * 15 14 12 18 18 N 1.31011 * 120.00048 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99906 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47298 * 90.00168 * 19 17 15 21 21 H 1.48499 * 109.47300 * 210.00201 * 19 17 15 22 22 H 1.48501 * 109.47400 * 330.00286 * 19 17 15 23 23 H 1.08996 * 109.47387 * 315.67548 * 1 2 3 24 24 H 1.08998 * 109.47040 * 75.67345 * 1 2 3 25 25 H 1.09000 * 109.46811 * 195.67352 * 1 2 3 26 26 H 1.09003 * 109.46881 * 180.23562 * 3 2 1 27 27 H 1.08994 * 109.47548 * 300.23511 * 3 2 1 28 28 H 1.08999 * 109.47447 * 60.23754 * 3 2 1 29 29 H 0.97004 * 117.66539 * 184.35829 * 6 4 2 30 30 H 1.08997 * 109.21642 * 217.71729 * 7 6 4 31 31 H 1.08995 * 109.21745 * 98.33697 * 7 6 4 32 32 H 1.08997 * 109.72253 * 166.41710 * 8 7 6 33 33 H 1.08999 * 109.72315 * 287.03112 * 8 7 6 34 34 H 0.97008 * 119.99453 * 0.02562 * 14 12 10 35 35 H 0.96997 * 120.00193 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4416 0.0000 4 6 2.0339 -0.7164 -1.2231 5 8 1.5484 -0.4363 -2.2986 6 7 2.9899 -1.6447 -1.1788 7 6 3.5987 -2.1481 0.0448 8 6 3.4252 -1.1464 1.1881 9 7 2.0225 -0.6978 1.1971 10 6 1.2226 -0.9181 2.2592 11 8 0.1176 -0.4163 2.3016 12 6 1.6936 -1.7763 3.3802 13 8 2.7463 -2.3757 3.2856 14 7 0.9524 -1.8887 4.5003 15 6 1.3829 -2.6740 5.5253 16 1 2.3183 -3.2074 5.4409 17 6 0.6155 -2.7900 6.6856 18 7 -0.5193 -2.1434 6.7878 19 14 1.2067 -3.8672 8.0925 20 1 2.0371 -3.0579 9.0204 21 1 0.0354 -4.4127 8.8243 22 1 2.0178 -4.9873 7.5514 23 1 -0.3634 0.7351 0.7180 24 1 -0.3633 0.2543 -0.9957 25 1 -0.3633 -0.9895 0.2776 26 1 3.1324 1.4398 -0.0042 27 1 1.6765 1.9573 -0.8878 28 1 1.6834 1.9548 0.8921 29 1 3.3013 -2.0111 -2.0212 30 1 4.6619 -2.3164 -0.1264 31 1 3.1259 -3.0911 0.3192 32 1 3.6638 -1.6265 2.1371 33 1 4.0842 -0.2924 1.0320 34 1 0.1118 -1.4105 4.5756 35 1 -1.0527 -2.2243 7.5938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104131800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -100.324422 kcal Electronic energy + Delta-G solvation = -21551.776479 eV Core-core repulsion = 18164.037490 eV Total energy + Delta-G solvation = -3387.738990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.39774 -40.77263 -39.19075 -37.79582 -36.27854 -35.97990 -33.59712 -33.13419 -29.87664 -28.50601 -27.81686 -26.05886 -24.45461 -23.79893 -21.32070 -20.34505 -19.28726 -18.78412 -18.44411 -17.55942 -17.18579 -16.79049 -16.60932 -16.41781 -15.85842 -15.65175 -15.38586 -14.86232 -14.73026 -14.51305 -13.79570 -13.67642 -13.40755 -13.29117 -13.20519 -13.04969 -12.95936 -12.71602 -12.50637 -12.41657 -12.07798 -11.67342 -11.52574 -11.22635 -10.26444 -10.22221 -9.82005 -9.67283 -8.64577 -6.08540 0.56667 1.32604 1.41849 1.49278 1.51345 1.61894 2.11160 2.28223 2.35717 3.04953 3.16597 3.29939 3.71452 3.79077 3.89872 3.95890 4.20078 4.31114 4.56586 4.62117 4.69331 4.77324 4.91229 4.98151 5.08613 5.10889 5.27944 5.42429 5.69839 5.70866 6.01337 6.16182 6.35026 6.75798 6.95593 7.02581 7.29246 7.81042 8.50589 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.005127 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.139385 B = 5459.746478 C = 5944.879064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.150 3.850 3 C -0.141 4.141 4 C 0.523 3.477 5 O -0.576 6.576 6 N -0.704 5.704 7 C 0.103 3.897 8 C 0.042 3.958 9 N -0.585 5.585 10 C 0.522 3.478 11 O -0.550 6.550 12 C 0.392 3.608 13 O -0.591 6.591 14 N -0.506 5.506 15 C -0.339 4.339 16 H 0.106 0.894 17 C -0.004 4.004 18 N -0.896 5.896 19 Si 1.009 2.991 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.261 1.261 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.409 0.591 30 H 0.132 0.868 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 2.185 -9.226 12.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 C -0.199 4.199 4 C 0.308 3.692 5 O -0.456 6.456 6 N -0.354 5.354 7 C -0.021 4.021 8 C -0.079 4.079 9 N -0.321 5.321 10 C 0.307 3.693 11 O -0.428 6.428 12 C 0.178 3.822 13 O -0.482 6.482 14 N -0.138 5.138 15 C -0.469 4.469 16 H 0.124 0.876 17 C -0.209 4.209 18 N -0.533 5.533 19 Si 0.830 3.170 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.185 1.185 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.246 0.754 30 H 0.150 0.850 31 H 0.080 0.920 32 H 0.173 0.827 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.784 2.310 -9.448 12.458 hybrid contribution -0.449 -0.360 0.379 0.690 sum 7.334 1.950 -9.069 11.825 Atomic orbital electron populations 1.21970 0.90760 1.02957 1.02438 1.20928 0.97020 0.94272 0.81480 1.22040 1.02382 0.91438 1.04062 1.20116 0.79200 0.79802 0.90092 1.90719 1.58109 1.66273 1.30461 1.45377 1.38355 1.40006 1.11680 1.21873 1.00886 0.96749 0.82631 1.23489 0.79822 0.99496 1.05089 1.48126 1.13124 1.56614 1.14210 1.20135 0.84608 0.80925 0.83604 1.90711 1.21847 1.50744 1.79502 1.19395 0.87822 0.89833 0.85169 1.90179 1.24500 1.52585 1.80935 1.41681 1.20686 1.38725 1.12716 1.20028 1.07861 1.24986 0.94046 0.87586 1.26528 0.94799 0.98230 1.01316 1.69550 1.12952 1.40386 1.30432 0.84701 0.78121 0.77907 0.76285 1.18981 1.19720 1.18511 0.89827 0.91039 0.94165 0.90443 0.89552 0.90959 0.75366 0.85044 0.91957 0.82715 0.88887 0.76585 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 7.06 71.98 0.51 -3.62 16 2 C 0.15 4.55 0.97 2.67 0.00 4.56 16 3 C -0.14 -3.47 8.61 71.98 0.62 -2.85 16 4 C 0.52 15.32 6.61 87.80 0.58 15.90 16 5 O -0.58 -19.67 16.91 -3.03 -0.05 -19.72 16 6 N -0.70 -15.98 5.42 -467.17 -2.53 -18.51 16 7 C 0.10 2.15 7.34 86.54 0.64 2.79 16 8 C 0.04 1.11 6.09 86.23 0.52 1.64 16 9 N -0.59 -19.31 2.62 -778.37 -2.04 -21.35 16 10 C 0.52 21.52 7.33 87.08 0.64 22.16 16 11 O -0.55 -24.39 12.81 -3.51 -0.04 -24.43 16 12 C 0.39 18.28 7.70 87.08 0.67 18.95 16 13 O -0.59 -27.48 12.74 -3.73 -0.05 -27.52 16 14 N -0.51 -25.83 5.24 -308.86 -1.62 -27.45 16 15 C -0.34 -17.76 9.67 84.35 0.82 -16.94 16 16 H 0.11 5.59 7.15 -2.91 -0.02 5.57 16 17 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 18 N -0.90 -46.35 13.03 21.77 0.28 -46.06 16 19 Si 1.01 38.64 29.56 68.60 2.03 40.66 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H 0.08 2.89 6.64 -2.39 -0.02 2.87 16 24 H 0.07 2.23 7.40 -2.39 -0.02 2.21 16 25 H 0.04 1.50 7.08 -2.39 -0.02 1.48 16 26 H 0.08 1.62 7.51 -2.39 -0.02 1.60 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.41 7.48 8.79 -92.71 -0.82 6.67 16 30 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.16 5.04 4.14 -56.81 -0.24 4.80 16 33 H 0.09 1.97 7.52 -2.39 -0.02 1.95 16 34 H 0.40 21.02 7.37 -92.70 -0.68 20.34 16 35 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -62.50 291.02 0.88 -61.63 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.57 Total: 39.90 kcal Atomic # 6 Polarization: 37.39 SS G_CDS: 5.47 Total: 42.85 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.91 Total: -113.37 kcal Atomic # 8 Polarization: -71.53 SS G_CDS: -0.14 Total: -71.68 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.66 kcal Total: -62.50 0.88 -61.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104131800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.697 kcal (2) G-P(sol) polarization free energy of solvation -62.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds