Wall clock time and date at job start Mon Mar 30 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47397 * 2 1 4 4 H 1.08996 * 109.66715 * 181.11666 * 3 2 1 5 5 C 1.50410 * 109.71948 * 60.96420 * 3 2 1 6 6 O 1.21275 * 118.46647 * 47.58385 * 5 3 2 7 7 N 1.33383 * 123.04368 * 227.83212 * 5 3 2 8 8 C 1.45650 * 124.58952 * 3.76230 * 7 5 3 9 9 C 1.52989 * 110.77689 * 338.38533 * 8 7 5 10 10 N 1.47053 * 109.56713 * 301.41892 * 3 2 1 11 11 C 1.34779 * 121.35387 * 342.57620 * 10 3 2 12 12 O 1.21441 * 119.99509 * 353.20258 * 11 10 3 13 13 C 1.48824 * 119.99785 * 173.19997 * 11 10 3 14 14 O 1.21501 * 120.00284 * 4.39083 * 13 11 10 15 15 N 1.34781 * 119.99618 * 184.39022 * 13 11 10 16 16 C 1.36117 * 119.99549 * 180.02562 * 15 13 11 17 17 H 1.08005 * 120.00568 * 359.97438 * 16 15 13 18 18 C 1.39585 * 119.99815 * 180.02562 * 16 15 13 19 19 N 1.31019 * 120.00144 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00080 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47146 * 59.99941 * 20 18 16 22 22 H 1.48502 * 109.47111 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47036 * 299.99537 * 20 18 16 24 24 H 1.08998 * 109.47010 * 294.47871 * 1 2 3 25 25 H 1.09003 * 109.46862 * 54.47171 * 1 2 3 26 26 H 1.08996 * 109.47244 * 174.46767 * 1 2 3 27 27 H 1.08999 * 109.47237 * 240.00505 * 2 1 3 28 28 H 1.09002 * 109.47184 * 120.00299 * 2 1 3 29 29 H 0.97001 * 117.70376 * 184.05034 * 7 5 3 30 30 H 1.09007 * 109.21585 * 98.71792 * 8 7 5 31 31 H 1.08997 * 109.21693 * 218.09481 * 8 7 5 32 32 H 1.08994 * 109.72127 * 166.39543 * 9 8 7 33 33 H 1.09006 * 109.71789 * 287.05509 * 9 8 7 34 34 H 0.96992 * 120.00316 * 0.02562 * 15 13 11 35 35 H 0.96993 * 119.99965 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4463 -0.0200 5 6 1.5614 2.1501 1.2379 6 8 1.6895 1.5937 2.3079 7 7 0.9983 3.3590 1.2129 8 6 0.7040 4.1091 -0.0004 9 6 1.5681 3.6195 -1.1641 10 7 1.5233 2.1477 -1.1825 11 6 1.0284 1.4742 -2.2399 12 8 1.1150 0.2637 -2.2833 13 6 0.3758 2.2142 -3.3541 14 8 0.3597 3.4291 -3.3493 15 7 -0.1973 1.5366 -4.3684 16 6 -0.7937 2.2134 -5.3878 17 1 -0.8081 3.2933 -5.3836 18 6 -1.3878 1.5116 -6.4380 19 7 -1.3709 0.2015 -6.4430 20 14 -2.2069 2.4403 -7.8366 21 1 -1.2065 3.3096 -8.5065 22 1 -2.7570 1.4718 -8.8188 23 1 -3.3080 3.2778 -7.2967 24 1 -0.3633 0.4258 0.9353 25 1 -0.3633 0.5972 -0.8364 26 1 -0.3633 -1.0228 -0.0991 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7725 3.7690 2.0625 30 1 -0.3479 3.9802 -0.2557 31 1 0.9039 5.1663 0.1740 32 1 1.1768 4.0111 -2.1030 33 1 2.5961 3.9545 -1.0252 34 1 -0.1848 0.5667 -4.3721 35 1 -1.7833 -0.2860 -7.1730 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110690066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:14 Heat of formation + Delta-G solvation = -67.450935 kcal Electronic energy + Delta-G solvation = -21655.382399 eV Core-core repulsion = 18269.068911 eV Total energy + Delta-G solvation = -3386.313488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99789 -39.22472 -37.56598 -36.40209 -34.65241 -34.25001 -32.33127 -31.58553 -28.99777 -27.39222 -25.76634 -23.99108 -22.79079 -21.93036 -19.79075 -18.82969 -18.08059 -17.29860 -17.06656 -16.02436 -15.96933 -15.53306 -15.12632 -14.99725 -14.49532 -14.07316 -13.95284 -13.53754 -13.20271 -13.15770 -12.61905 -12.47580 -12.07539 -11.91729 -11.49046 -11.29611 -11.27149 -11.10900 -10.71559 -10.65635 -10.51963 -10.13650 -9.87221 -9.46843 -9.09145 -8.45374 -8.39660 -7.89766 -6.82748 -4.15670 2.24544 2.62625 2.91625 3.08083 3.08910 3.12756 3.34639 3.91905 4.09096 4.54342 4.66807 4.97570 5.03080 5.10403 5.23155 5.28474 5.38795 5.65158 5.74283 5.87842 6.01220 6.04248 6.22710 6.37766 6.51644 6.60225 6.74055 6.90338 7.16541 7.28451 7.51501 7.64609 8.15759 8.21503 8.46098 8.79875 9.13684 9.67498 10.30797 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033103 B = 0.005353 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.635947 B = 5229.028717 C = 5769.442911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.134 3.866 4 H 0.099 0.901 5 C 0.520 3.480 6 O -0.554 6.554 7 N -0.718 5.718 8 C 0.098 3.902 9 C 0.036 3.964 10 N -0.596 5.596 11 C 0.524 3.476 12 O -0.530 6.530 13 C 0.386 3.614 14 O -0.587 6.587 15 N -0.484 5.484 16 C -0.307 4.307 17 H 0.116 0.884 18 C 0.034 3.966 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.394 0.606 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.190 0.810 33 H 0.063 0.937 34 H 0.406 0.594 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 4.833 7.780 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.027 3.973 4 H 0.117 0.883 5 C 0.305 3.695 6 O -0.431 6.431 7 N -0.370 5.370 8 C -0.027 4.027 9 C -0.085 4.085 10 N -0.332 5.332 11 C 0.311 3.689 12 O -0.407 6.407 13 C 0.172 3.828 14 O -0.479 6.479 15 N -0.116 5.116 16 C -0.438 4.438 17 H 0.133 0.867 18 C -0.174 4.174 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.192 1.192 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.205 0.795 33 H 0.081 0.919 34 H 0.242 0.758 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.430 4.350 7.928 9.671 hybrid contribution -0.419 0.161 -0.106 0.461 sum 3.011 4.511 7.822 9.518 Atomic orbital electron populations 1.21799 0.95377 1.02078 1.00539 1.22057 0.97278 0.92290 1.04689 1.21449 0.99424 0.94408 0.81978 0.88314 1.20374 0.76815 0.81128 0.91133 1.90729 1.57164 1.64469 1.30778 1.45514 1.62394 1.18525 1.10533 1.21836 1.00938 0.95634 0.84304 1.23773 1.00181 0.79173 1.05406 1.47920 1.62078 1.07392 1.15856 1.20405 0.78257 0.87186 0.83030 1.90626 1.57489 1.14080 1.78475 1.18855 0.90166 0.87653 0.86114 1.89994 1.66499 1.13122 1.78249 1.41562 1.42704 1.10620 1.16748 1.19894 1.31576 0.94138 0.98211 0.86674 1.25648 0.96757 0.95620 0.99386 1.69469 1.40576 1.06524 1.33242 0.85746 0.79505 0.78913 0.79192 1.19219 1.20503 1.19242 0.94352 0.92428 0.92456 0.86153 0.91402 0.77107 0.91021 0.89713 0.79534 0.91897 0.75778 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.66 37.16 0.32 -2.11 16 2 C -0.13 -2.07 4.92 -26.73 -0.13 -2.20 16 3 C 0.13 2.11 3.36 -68.92 -0.23 1.88 16 4 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 5 C 0.52 8.12 6.25 -11.75 -0.07 8.05 16 6 O -0.55 -10.05 17.18 5.56 0.10 -9.95 16 7 N -0.72 -9.20 5.42 -61.33 -0.33 -9.53 16 8 C 0.10 1.17 7.34 -4.51 -0.03 1.14 16 9 C 0.04 0.52 6.33 -3.63 -0.02 0.49 16 10 N -0.60 -10.02 2.79 -167.30 -0.47 -10.48 16 11 C 0.52 10.48 5.81 -11.88 -0.07 10.41 16 12 O -0.53 -11.10 11.58 5.42 0.06 -11.04 16 13 C 0.39 8.72 7.75 -11.88 -0.09 8.63 16 14 O -0.59 -13.42 12.62 5.37 0.07 -13.35 16 15 N -0.48 -11.83 5.24 -11.59 -0.06 -11.89 16 16 C -0.31 -7.77 9.67 -15.15 -0.15 -7.92 16 17 H 0.12 2.93 7.15 -52.48 -0.38 2.56 16 18 C 0.03 0.83 5.51 -17.40 -0.10 0.73 16 19 N -0.86 -21.66 13.03 55.53 0.72 -20.94 16 20 Si 0.94 18.72 29.56 -169.99 -5.02 13.70 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H 0.04 0.65 7.46 -51.93 -0.39 0.26 16 25 H 0.06 1.10 5.20 -51.93 -0.27 0.83 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.12 2.12 5.62 -52.21 -0.29 1.83 16 28 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 29 H 0.39 4.30 8.80 -40.82 -0.36 3.94 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.19 3.18 3.86 -56.57 -0.22 2.96 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.41 10.10 7.36 -40.82 -0.30 9.80 16 35 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 286.66 15.07 4.32 4.32 Total: -1.00 -27.97 286.66 -5.05 -33.02 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -3.86 Total: 17.06 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: -0.57 Total: 19.09 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.14 Total: -52.85 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: 0.23 Total: -34.34 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.97 -5.05 -33.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110690066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.434 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds