Wall clock time and date at job start Mon Mar 30 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47397 * 2 1 4 4 H 1.08996 * 109.66715 * 181.11666 * 3 2 1 5 5 C 1.50410 * 109.71948 * 60.96420 * 3 2 1 6 6 O 1.21275 * 118.46647 * 47.58385 * 5 3 2 7 7 N 1.33383 * 123.04368 * 227.83212 * 5 3 2 8 8 C 1.45650 * 124.58952 * 3.76230 * 7 5 3 9 9 C 1.52989 * 110.77689 * 338.38533 * 8 7 5 10 10 N 1.47053 * 109.56713 * 301.41892 * 3 2 1 11 11 C 1.34779 * 121.35387 * 342.57620 * 10 3 2 12 12 O 1.21441 * 119.99509 * 353.20258 * 11 10 3 13 13 C 1.48824 * 119.99785 * 173.19997 * 11 10 3 14 14 O 1.21501 * 120.00284 * 4.39083 * 13 11 10 15 15 N 1.34781 * 119.99618 * 184.39022 * 13 11 10 16 16 C 1.36117 * 119.99549 * 180.02562 * 15 13 11 17 17 H 1.08005 * 120.00568 * 359.97438 * 16 15 13 18 18 C 1.39585 * 119.99815 * 180.02562 * 16 15 13 19 19 N 1.31019 * 120.00144 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00080 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47146 * 59.99941 * 20 18 16 22 22 H 1.48502 * 109.47111 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47036 * 299.99537 * 20 18 16 24 24 H 1.08998 * 109.47010 * 294.47871 * 1 2 3 25 25 H 1.09003 * 109.46862 * 54.47171 * 1 2 3 26 26 H 1.08996 * 109.47244 * 174.46767 * 1 2 3 27 27 H 1.08999 * 109.47237 * 240.00505 * 2 1 3 28 28 H 1.09002 * 109.47184 * 120.00299 * 2 1 3 29 29 H 0.97001 * 117.70376 * 184.05034 * 7 5 3 30 30 H 1.09007 * 109.21585 * 98.71792 * 8 7 5 31 31 H 1.08997 * 109.21693 * 218.09481 * 8 7 5 32 32 H 1.08994 * 109.72127 * 166.39543 * 9 8 7 33 33 H 1.09006 * 109.71789 * 287.05509 * 9 8 7 34 34 H 0.96992 * 120.00316 * 0.02562 * 15 13 11 35 35 H 0.96993 * 119.99965 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4463 -0.0200 5 6 1.5614 2.1501 1.2379 6 8 1.6895 1.5937 2.3079 7 7 0.9983 3.3590 1.2129 8 6 0.7040 4.1091 -0.0004 9 6 1.5681 3.6195 -1.1641 10 7 1.5233 2.1477 -1.1825 11 6 1.0284 1.4742 -2.2399 12 8 1.1150 0.2637 -2.2833 13 6 0.3758 2.2142 -3.3541 14 8 0.3597 3.4291 -3.3493 15 7 -0.1973 1.5366 -4.3684 16 6 -0.7937 2.2134 -5.3878 17 1 -0.8081 3.2933 -5.3836 18 6 -1.3878 1.5116 -6.4380 19 7 -1.3709 0.2015 -6.4430 20 14 -2.2069 2.4403 -7.8366 21 1 -1.2065 3.3096 -8.5065 22 1 -2.7570 1.4718 -8.8188 23 1 -3.3080 3.2778 -7.2967 24 1 -0.3633 0.4258 0.9353 25 1 -0.3633 0.5972 -0.8364 26 1 -0.3633 -1.0228 -0.0991 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7725 3.7690 2.0625 30 1 -0.3479 3.9802 -0.2557 31 1 0.9039 5.1663 0.1740 32 1 1.1768 4.0111 -2.1030 33 1 2.5961 3.9545 -1.0252 34 1 -0.1848 0.5667 -4.3721 35 1 -1.7833 -0.2860 -7.1730 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110690066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:13 Heat of formation + Delta-G solvation = -89.335100 kcal Electronic energy + Delta-G solvation = -21656.331367 eV Core-core repulsion = 18269.068911 eV Total energy + Delta-G solvation = -3387.262457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.39940 -40.71750 -39.26135 -37.74962 -36.28022 -35.70185 -33.75092 -33.38050 -30.21074 -28.84892 -27.50962 -25.25572 -24.41461 -23.21685 -21.34819 -20.44933 -19.61313 -18.72771 -18.35010 -17.56421 -17.32356 -16.99524 -16.78247 -16.40733 -15.97398 -15.70166 -15.20245 -15.14133 -14.80197 -14.52579 -14.02794 -13.72930 -13.66586 -13.40404 -12.93502 -12.84238 -12.63450 -12.50970 -12.48852 -12.12934 -12.06605 -11.62805 -11.47546 -10.97881 -10.26519 -10.20014 -9.78156 -9.55564 -8.63734 -6.08008 0.58611 1.35193 1.44305 1.51890 1.53192 1.61662 2.15283 2.29232 2.38909 3.06318 3.18175 3.37511 3.72677 3.88105 3.95183 3.98467 4.22395 4.23798 4.46357 4.59169 4.64900 4.87650 4.97721 5.04341 5.13639 5.19745 5.30085 5.51461 5.71796 5.72872 6.04019 6.19910 6.37845 6.78890 6.97763 7.06037 7.30673 7.82865 8.50901 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033103 B = 0.005353 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.635947 B = 5229.028717 C = 5769.442911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.131 3.869 4 H 0.122 0.878 5 C 0.521 3.479 6 O -0.580 6.580 7 N -0.705 5.705 8 C 0.102 3.898 9 C 0.031 3.969 10 N -0.587 5.587 11 C 0.526 3.474 12 O -0.542 6.542 13 C 0.391 3.609 14 O -0.590 6.590 15 N -0.504 5.504 16 C -0.340 4.340 17 H 0.106 0.894 18 C -0.003 4.003 19 N -0.895 5.895 20 Si 1.008 2.992 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.263 1.263 24 H 0.039 0.961 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.408 0.592 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.167 0.833 33 H 0.092 0.908 34 H 0.400 0.600 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 6.278 8.639 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.025 3.975 4 H 0.139 0.861 5 C 0.306 3.694 6 O -0.460 6.460 7 N -0.356 5.356 8 C -0.022 4.022 9 C -0.090 4.090 10 N -0.322 5.322 11 C 0.312 3.688 12 O -0.421 6.421 13 C 0.177 3.823 14 O -0.482 6.482 15 N -0.136 5.136 16 C -0.470 4.470 17 H 0.124 0.876 18 C -0.208 4.208 19 N -0.532 5.532 20 Si 0.829 3.171 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.188 1.188 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.245 0.755 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.183 0.817 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.856 5.856 8.814 11.263 hybrid contribution -0.467 -0.215 -0.215 0.557 sum 3.389 5.641 8.599 10.828 Atomic orbital electron populations 1.21721 0.96130 1.01865 0.99466 1.21965 0.96497 0.92973 1.04545 1.21587 1.00650 0.93863 0.81399 0.86111 1.20230 0.77022 0.81724 0.90375 1.90730 1.58570 1.65310 1.31406 1.45407 1.60999 1.17638 1.11539 1.21882 0.99661 0.97673 0.82945 1.23777 1.02329 0.77470 1.05408 1.47934 1.60604 1.08550 1.15129 1.19941 0.78632 0.86889 0.83304 1.90639 1.58140 1.14456 1.78832 1.19457 0.88841 0.87864 0.86142 1.90048 1.66069 1.13390 1.78651 1.41649 1.44096 1.10279 1.17587 1.19990 1.33528 0.93941 0.99561 0.87583 1.26511 0.96709 0.96354 1.01214 1.69545 1.41648 1.07789 1.34242 0.84775 0.78492 0.77734 0.76125 1.18734 1.19714 1.18792 0.94232 0.94657 0.92127 0.87391 0.90276 0.75547 0.92082 0.85300 0.81712 0.89020 0.76497 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.66 71.98 0.62 -3.95 16 2 C -0.12 -3.88 4.92 30.60 0.15 -3.73 16 3 C 0.13 3.84 3.36 44.05 0.15 3.99 16 4 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 5 C 0.52 14.93 6.25 87.78 0.55 15.48 16 6 O -0.58 -19.76 17.18 -3.02 -0.05 -19.81 16 7 N -0.70 -15.78 5.42 -467.12 -2.53 -18.31 16 8 C 0.10 2.11 7.34 86.54 0.63 2.75 16 9 C 0.03 0.80 6.33 86.23 0.55 1.35 16 10 N -0.59 -18.79 2.79 -801.52 -2.23 -21.03 16 11 C 0.53 20.96 5.81 87.08 0.51 21.47 16 12 O -0.54 -22.90 11.58 -3.53 -0.04 -22.94 16 13 C 0.39 17.88 7.75 87.08 0.68 18.56 16 14 O -0.59 -27.04 12.62 -3.72 -0.05 -27.08 16 15 N -0.50 -25.33 5.24 -308.87 -1.62 -26.95 16 16 C -0.34 -17.62 9.67 84.35 0.82 -16.81 16 17 H 0.11 5.53 7.15 -2.91 -0.02 5.51 16 18 C 0.00 -0.15 5.51 85.14 0.47 0.32 16 19 N -0.89 -45.92 13.03 21.77 0.28 -45.63 16 20 Si 1.01 38.37 29.56 68.60 2.03 40.40 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H 0.04 1.30 7.46 -2.39 -0.02 1.29 16 25 H 0.03 1.34 5.20 -2.39 -0.01 1.33 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 27 H 0.11 3.75 5.62 -6.79 -0.04 3.71 16 28 H 0.08 2.34 7.85 -2.39 -0.02 2.33 16 29 H 0.41 7.47 8.80 -92.71 -0.82 6.65 16 30 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.17 5.34 3.86 -75.84 -0.29 5.04 16 33 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.40 20.70 7.36 -92.71 -0.68 20.02 16 35 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 Total: -1.00 -60.74 286.66 0.26 -60.48 By element: Atomic # 1 Polarization: 42.11 SS G_CDS: -0.64 Total: 41.46 kcal Atomic # 6 Polarization: 34.29 SS G_CDS: 5.12 Total: 39.41 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -6.10 Total: -111.92 kcal Atomic # 8 Polarization: -69.69 SS G_CDS: -0.14 Total: -69.83 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -60.74 0.26 -60.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110690066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.859 kcal (2) G-P(sol) polarization free energy of solvation -60.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds