Wall clock time and date at job start Mon Mar 30 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 H 1.08993 * 109.66686 * 55.29188 * 3 2 1 5 5 C 1.50438 * 109.56861 * 175.59559 * 3 2 1 6 6 O 1.21284 * 118.48226 * 287.08870 * 5 3 2 7 7 N 1.33378 * 123.02629 * 107.10889 * 5 3 2 8 8 C 1.45644 * 124.58957 * 4.32410 * 7 5 3 9 9 C 1.53474 * 110.73868 * 337.97361 * 8 7 5 10 10 N 1.47051 * 109.56568 * 294.99680 * 3 2 1 11 11 C 1.34777 * 121.35040 * 102.89080 * 10 3 2 12 12 O 1.21446 * 119.99734 * 182.53052 * 11 10 3 13 13 C 1.48825 * 120.00055 * 2.53732 * 11 10 3 14 14 O 1.21501 * 120.00360 * 353.85359 * 13 11 10 15 15 N 1.34786 * 120.00033 * 173.58685 * 13 11 10 16 16 C 1.36111 * 120.00122 * 180.27620 * 15 13 11 17 17 H 1.08003 * 120.00186 * 359.97438 * 16 15 13 18 18 C 1.39587 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31008 * 120.00622 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99565 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47041 * 89.99950 * 20 18 16 22 22 H 1.48493 * 109.47283 * 210.00392 * 20 18 16 23 23 H 1.48504 * 109.47116 * 330.00485 * 20 18 16 24 24 H 1.08996 * 109.46988 * 60.00611 * 1 2 3 25 25 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47214 * 300.00268 * 1 2 3 27 27 H 1.08995 * 109.47214 * 239.99732 * 2 1 3 28 28 H 1.09005 * 109.47120 * 119.99560 * 2 1 3 29 29 H 0.97000 * 117.70625 * 184.34337 * 7 5 3 30 30 H 1.08998 * 109.22166 * 98.42599 * 8 7 5 31 31 H 1.09003 * 109.21772 * 217.80976 * 8 7 5 32 32 H 1.09000 * 109.84935 * 287.31963 * 9 8 7 33 33 H 1.08996 * 109.83929 * 166.50439 * 9 8 7 34 34 H 0.97002 * 119.99793 * 0.26842 * 15 13 11 35 35 H 0.96995 * 120.00248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9831 0.8437 5 6 3.5404 1.4465 0.1089 6 8 4.0438 1.1609 1.1747 7 7 4.3426 1.7499 -0.9126 8 6 3.8830 2.1981 -2.2200 9 6 2.4294 1.7690 -2.4615 10 7 1.6521 2.1020 -1.2558 11 6 0.6233 2.9714 -1.3026 12 8 0.2949 3.4670 -2.3616 13 6 -0.1100 3.3242 -0.0565 14 8 0.1438 2.7469 0.9820 15 7 -1.0519 4.2881 -0.0789 16 6 -1.7186 4.6147 1.0619 17 1 -1.4932 4.1013 1.9850 18 6 -2.6938 5.6132 1.0389 19 7 -3.3359 5.9273 2.1368 20 14 -3.0832 6.5017 -0.5574 21 1 -4.1619 5.7776 -1.2766 22 1 -3.5306 7.8855 -0.2573 23 1 -1.8664 6.5483 -1.4076 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 5.2991 1.6659 -0.7753 30 1 3.9517 3.2847 -2.2714 31 1 4.5167 1.7616 -2.9921 32 1 2.3857 0.6950 -2.6424 33 1 2.0236 2.3040 -3.3201 34 1 -1.2546 4.7490 -0.9080 35 1 -4.0132 6.6214 2.1209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110690069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:17 Heat of formation + Delta-G solvation = -83.334849 kcal Electronic energy + Delta-G solvation = -21639.468560 eV Core-core repulsion = 18252.466294 eV Total energy + Delta-G solvation = -3387.002266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86731 -39.25046 -37.59350 -36.38228 -35.23064 -34.10015 -32.21547 -31.99540 -29.53422 -27.28554 -25.94192 -24.23294 -22.09961 -22.00294 -19.84512 -19.37363 -18.38826 -17.28211 -17.13932 -16.08069 -15.86862 -15.80679 -15.14426 -14.98220 -14.51391 -14.23101 -13.84203 -13.62928 -13.16140 -13.03236 -12.67376 -12.51972 -12.48273 -12.09647 -11.88268 -11.52386 -11.34952 -11.07413 -10.91583 -10.74637 -10.34029 -10.13971 -10.07517 -9.85463 -9.18167 -8.59021 -8.52358 -8.17082 -6.69638 -4.10845 2.10729 2.68678 2.80237 2.97014 3.00190 3.03999 3.29069 3.86170 3.96595 4.32458 4.50809 4.62304 4.96455 5.02532 5.08900 5.21466 5.37456 5.38285 5.55694 5.63401 5.70957 5.98229 6.03304 6.17510 6.37974 6.56452 6.75194 6.76240 7.14566 7.26129 7.33568 7.78007 8.07533 8.23110 8.35293 8.62002 9.07082 9.49199 10.39546 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.005990 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.324504 B = 4673.038283 C = 5035.634575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.087 3.913 4 H 0.197 0.803 5 C 0.518 3.482 6 O -0.547 6.547 7 N -0.724 5.724 8 C 0.099 3.901 9 C 0.091 3.909 10 N -0.594 5.594 11 C 0.522 3.478 12 O -0.547 6.547 13 C 0.397 3.603 14 O -0.562 6.562 15 N -0.516 5.516 16 C -0.307 4.307 17 H 0.131 0.869 18 C 0.055 3.945 19 N -0.841 5.841 20 Si 0.875 3.125 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.260 1.260 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.395 0.605 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.384 0.616 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 -6.935 -10.473 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.018 4.018 4 H 0.212 0.788 5 C 0.304 3.696 6 O -0.423 6.423 7 N -0.377 5.377 8 C -0.026 4.026 9 C -0.032 4.032 10 N -0.329 5.329 11 C 0.309 3.691 12 O -0.424 6.424 13 C 0.183 3.817 14 O -0.451 6.451 15 N -0.151 5.151 16 C -0.437 4.437 17 H 0.149 0.851 18 C -0.155 4.155 19 N -0.477 5.477 20 Si 0.700 3.300 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.185 1.185 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.230 0.770 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.219 0.781 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.626 -7.003 -9.738 15.380 hybrid contribution 0.124 0.726 -1.384 1.567 sum 9.750 -6.277 -11.122 16.067 Atomic orbital electron populations 1.21747 0.94026 1.00922 1.03691 1.21601 0.97782 0.93564 1.02045 1.23091 0.89356 0.97787 0.91589 0.78785 1.20688 0.90326 0.75351 0.83196 1.90750 1.75688 1.49187 1.26716 1.45442 1.10326 1.69024 1.12860 1.21800 0.95935 1.00290 0.84596 1.22036 0.89584 1.01608 0.90021 1.48001 1.32058 1.43496 1.09359 1.20578 0.80003 0.78195 0.90284 1.90679 1.66310 1.53397 1.32040 1.18668 0.87188 0.87389 0.88469 1.90225 1.67171 1.55392 1.32289 1.41835 1.31209 1.30463 1.11613 1.19615 1.15584 1.18916 0.89599 0.85116 1.25261 0.95711 0.96640 0.97869 1.69432 1.22099 1.29076 1.27124 0.86684 0.80134 0.80495 0.82709 1.18750 1.19401 1.18472 0.93440 0.93231 0.90039 0.92788 0.90148 0.76994 0.91265 0.89541 0.90369 0.87106 0.78097 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.91 37.16 0.33 -1.96 16 2 C -0.11 -1.62 5.50 -26.73 -0.15 -1.77 16 3 C 0.09 1.44 2.25 -68.91 -0.16 1.29 16 4 H 0.20 3.96 4.32 -55.10 -0.24 3.72 16 5 C 0.52 8.27 7.10 -11.73 -0.08 8.18 16 6 O -0.55 -10.48 17.80 5.55 0.10 -10.38 16 7 N -0.72 -8.58 5.42 -61.07 -0.33 -8.92 16 8 C 0.10 0.94 7.35 -4.26 -0.03 0.90 16 9 C 0.09 1.05 6.42 -3.38 -0.02 1.03 16 10 N -0.59 -9.50 2.25 -166.99 -0.38 -9.88 16 11 C 0.52 10.20 6.81 -11.88 -0.08 10.12 16 12 O -0.55 -11.17 15.97 5.41 0.09 -11.08 16 13 C 0.40 8.97 7.53 -11.87 -0.09 8.88 16 14 O -0.56 -13.38 10.59 5.36 0.06 -13.32 16 15 N -0.52 -12.29 5.05 -11.59 -0.06 -12.35 16 16 C -0.31 -8.13 10.16 -15.15 -0.15 -8.29 16 17 H 0.13 3.85 7.37 -52.48 -0.39 3.46 16 18 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16 19 N -0.84 -22.53 13.94 55.53 0.77 -21.76 16 20 Si 0.88 18.53 27.74 -169.99 -4.72 13.81 16 21 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.31 6.53 56.52 0.37 -4.94 16 24 H 0.05 0.78 7.06 -51.93 -0.37 0.42 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.48 6.67 -51.93 -0.35 1.14 16 27 H 0.05 0.68 7.33 -51.93 -0.38 0.30 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.40 3.96 8.80 -40.82 -0.36 3.60 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.77 7.38 -51.93 -0.38 0.39 16 33 H 0.11 1.27 7.06 -51.93 -0.37 0.91 16 34 H 0.38 8.65 5.24 -40.82 -0.21 8.43 16 35 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -30.20 289.15 -4.53 -34.74 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -3.90 Total: 15.09 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: -0.53 Total: 19.69 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.01 Total: -52.90 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: 0.24 Total: -34.79 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.72 Total: 13.81 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.20 -4.53 -34.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110690069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.596 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds