Wall clock time and date at job start Mon Mar 30 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 H 1.08993 * 109.66686 * 55.29188 * 3 2 1 5 5 C 1.50438 * 109.56861 * 175.59559 * 3 2 1 6 6 O 1.21284 * 118.48226 * 287.08870 * 5 3 2 7 7 N 1.33378 * 123.02629 * 107.10889 * 5 3 2 8 8 C 1.45644 * 124.58957 * 4.32410 * 7 5 3 9 9 C 1.53474 * 110.73868 * 337.97361 * 8 7 5 10 10 N 1.47051 * 109.56568 * 294.99680 * 3 2 1 11 11 C 1.34777 * 121.35040 * 102.89080 * 10 3 2 12 12 O 1.21446 * 119.99734 * 182.53052 * 11 10 3 13 13 C 1.48825 * 120.00055 * 2.53732 * 11 10 3 14 14 O 1.21501 * 120.00360 * 353.85359 * 13 11 10 15 15 N 1.34786 * 120.00033 * 173.58685 * 13 11 10 16 16 C 1.36111 * 120.00122 * 180.27620 * 15 13 11 17 17 H 1.08003 * 120.00186 * 359.97438 * 16 15 13 18 18 C 1.39587 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31008 * 120.00622 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99565 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47041 * 89.99950 * 20 18 16 22 22 H 1.48493 * 109.47283 * 210.00392 * 20 18 16 23 23 H 1.48504 * 109.47116 * 330.00485 * 20 18 16 24 24 H 1.08996 * 109.46988 * 60.00611 * 1 2 3 25 25 H 1.08999 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47214 * 300.00268 * 1 2 3 27 27 H 1.08995 * 109.47214 * 239.99732 * 2 1 3 28 28 H 1.09005 * 109.47120 * 119.99560 * 2 1 3 29 29 H 0.97000 * 117.70625 * 184.34337 * 7 5 3 30 30 H 1.08998 * 109.22166 * 98.42599 * 8 7 5 31 31 H 1.09003 * 109.21772 * 217.80976 * 8 7 5 32 32 H 1.09000 * 109.84935 * 287.31963 * 9 8 7 33 33 H 1.08996 * 109.83929 * 166.50439 * 9 8 7 34 34 H 0.97002 * 119.99793 * 0.26842 * 15 13 11 35 35 H 0.96995 * 120.00248 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6113 1.9831 0.8437 5 6 3.5404 1.4465 0.1089 6 8 4.0438 1.1609 1.1747 7 7 4.3426 1.7499 -0.9126 8 6 3.8830 2.1981 -2.2200 9 6 2.4294 1.7690 -2.4615 10 7 1.6521 2.1020 -1.2558 11 6 0.6233 2.9714 -1.3026 12 8 0.2949 3.4670 -2.3616 13 6 -0.1100 3.3242 -0.0565 14 8 0.1438 2.7469 0.9820 15 7 -1.0519 4.2881 -0.0789 16 6 -1.7186 4.6147 1.0619 17 1 -1.4932 4.1013 1.9850 18 6 -2.6938 5.6132 1.0389 19 7 -3.3359 5.9273 2.1368 20 14 -3.0832 6.5017 -0.5574 21 1 -4.1619 5.7776 -1.2766 22 1 -3.5306 7.8855 -0.2573 23 1 -1.8664 6.5483 -1.4076 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 5.2991 1.6659 -0.7753 30 1 3.9517 3.2847 -2.2714 31 1 4.5167 1.7616 -2.9921 32 1 2.3857 0.6950 -2.6424 33 1 2.0236 2.3040 -3.3201 34 1 -1.2546 4.7490 -0.9080 35 1 -4.0132 6.6214 2.1209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110690069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:17 Heat of formation + Delta-G solvation = -108.166129 kcal Electronic energy + Delta-G solvation = -21640.545325 eV Core-core repulsion = 18252.466294 eV Total energy + Delta-G solvation = -3388.079031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.25964 -40.75935 -39.28995 -37.78996 -36.61469 -35.72953 -33.97796 -33.43676 -30.64800 -28.74922 -27.65009 -25.49427 -23.61314 -23.23551 -21.50450 -21.02195 -19.74154 -18.77053 -18.42570 -17.49048 -17.38859 -17.21248 -16.71721 -16.40638 -15.78240 -15.69539 -15.28060 -15.17992 -14.75060 -14.56356 -14.44209 -13.82939 -13.66326 -13.45888 -13.05120 -13.01264 -12.59248 -12.55998 -12.46166 -12.28040 -12.04995 -11.68189 -11.66355 -11.43841 -10.46992 -10.20935 -9.92260 -9.83701 -8.62186 -6.15533 0.45184 1.28222 1.32474 1.36668 1.41285 1.48154 2.09650 2.16166 2.25649 2.69774 3.06186 3.40159 3.61358 3.74722 3.95579 4.10769 4.16946 4.36835 4.43445 4.66475 4.67694 4.76184 4.90534 4.97738 5.09008 5.19929 5.27799 5.42103 5.74696 5.78068 5.89711 6.15470 6.25349 6.57484 6.77353 7.07393 7.13683 7.62894 8.51927 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.005990 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.324504 B = 4673.038283 C = 5035.634575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C 0.083 3.917 4 H 0.156 0.844 5 C 0.519 3.481 6 O -0.587 6.587 7 N -0.707 5.707 8 C 0.099 3.901 9 C 0.082 3.918 10 N -0.581 5.581 11 C 0.529 3.471 12 O -0.551 6.551 13 C 0.402 3.598 14 O -0.576 6.576 15 N -0.528 5.528 16 C -0.335 4.335 17 H 0.081 0.919 18 C 0.011 3.989 19 N -0.891 5.891 20 Si 0.946 3.054 21 H -0.252 1.252 22 H -0.259 1.259 23 H -0.247 1.247 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.409 0.591 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.392 0.608 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 -7.710 -14.215 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C -0.023 4.023 4 H 0.172 0.828 5 C 0.305 3.695 6 O -0.467 6.467 7 N -0.358 5.358 8 C -0.025 4.025 9 C -0.039 4.039 10 N -0.315 5.315 11 C 0.314 3.686 12 O -0.430 6.430 13 C 0.187 3.813 14 O -0.464 6.464 15 N -0.165 5.165 16 C -0.464 4.464 17 H 0.099 0.901 18 C -0.194 4.194 19 N -0.528 5.528 20 Si 0.765 3.235 21 H -0.176 1.176 22 H -0.183 1.183 23 H -0.171 1.171 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.246 0.754 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.228 0.772 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.531 -7.795 -13.510 19.397 hybrid contribution -0.252 0.780 -0.223 0.849 sum 11.278 -7.015 -13.733 19.105 Atomic orbital electron populations 1.21668 0.94988 1.01899 1.01283 1.21569 0.96716 0.92341 1.03622 1.22790 0.90372 0.98531 0.90558 0.82769 1.20408 0.89939 0.75591 0.83554 1.90740 1.76033 1.51448 1.28484 1.45339 1.10682 1.67000 1.12804 1.22075 0.95291 1.00854 0.84309 1.22527 0.89957 1.03633 0.87782 1.48004 1.30917 1.41688 1.10920 1.19813 0.80893 0.79295 0.88569 1.90680 1.66831 1.54031 1.31426 1.19588 0.86098 0.85848 0.89724 1.90300 1.67109 1.55221 1.33734 1.41704 1.32086 1.31704 1.11041 1.19173 1.17778 1.20316 0.89138 0.90080 1.26067 0.94777 0.96824 1.01711 1.69544 1.23273 1.30357 1.29612 0.85625 0.80504 0.79354 0.77974 1.17606 1.18310 1.17061 0.94443 0.90598 0.93718 0.89472 0.90180 0.75412 0.91116 0.84183 0.87501 0.86356 0.77195 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.91 71.98 0.64 -3.68 16 2 C -0.10 -2.86 5.50 30.59 0.17 -2.69 16 3 C 0.08 2.69 2.25 44.06 0.10 2.79 16 4 H 0.16 6.50 4.32 -52.60 -0.23 6.27 16 5 C 0.52 15.62 7.10 87.79 0.62 16.24 16 6 O -0.59 -22.17 17.80 -3.04 -0.05 -22.22 16 7 N -0.71 -14.08 5.42 -466.28 -2.53 -16.60 16 8 C 0.10 1.34 7.35 86.70 0.64 1.98 16 9 C 0.08 1.51 6.42 86.39 0.55 2.06 16 10 N -0.58 -17.29 2.25 -800.56 -1.80 -19.09 16 11 C 0.53 20.06 6.81 87.08 0.59 20.65 16 12 O -0.55 -21.30 15.97 -3.55 -0.06 -21.36 16 13 C 0.40 18.64 7.53 87.08 0.66 19.29 16 14 O -0.58 -28.93 10.59 -3.72 -0.04 -28.97 16 15 N -0.53 -25.85 5.05 -308.87 -1.56 -27.42 16 16 C -0.33 -18.76 10.16 84.36 0.86 -17.90 16 17 H 0.08 5.23 7.37 -2.91 -0.02 5.20 16 18 C 0.01 0.61 5.51 85.14 0.47 1.08 16 19 N -0.89 -49.95 13.94 21.76 0.30 -49.65 16 20 Si 0.95 38.32 27.74 68.60 1.90 40.22 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 23 H -0.25 -9.35 6.53 99.48 0.65 -8.70 16 24 H 0.04 1.19 7.06 -2.39 -0.02 1.18 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.69 6.67 -2.39 -0.02 1.67 16 27 H 0.09 1.84 7.33 -2.39 -0.02 1.82 16 28 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.41 6.57 8.80 -92.71 -0.82 5.76 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 1.46 7.38 -2.39 -0.02 1.45 16 33 H 0.12 2.14 7.06 -2.39 -0.02 2.12 16 34 H 0.39 17.59 5.24 -92.71 -0.49 17.11 16 35 H 0.29 14.69 8.30 -92.71 -0.77 13.93 16 Total: -1.00 -71.11 289.15 1.04 -70.06 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.42 Total: 35.20 kcal Atomic # 6 Polarization: 34.53 SS G_CDS: 5.30 Total: 39.83 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -5.59 Total: -112.76 kcal Atomic # 8 Polarization: -72.40 SS G_CDS: -0.15 Total: -72.55 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -71.11 1.04 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110690069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.104 kcal (2) G-P(sol) polarization free energy of solvation -71.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds