Wall clock time and date at job start Mon Mar 30 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34235 * 116.99354 * 90.00249 * 12 2 1 14 14 O 1.20826 * 120.00385 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99606 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.46811 * 179.97438 * 15 13 12 17 17 N 1.46503 * 109.46828 * 180.02562 * 16 15 13 18 18 C 1.33870 * 122.75764 * 269.70652 * 17 16 15 19 19 O 1.21227 * 125.40327 * 359.97438 * 18 17 16 20 20 C 1.51313 * 109.20670 * 179.84247 * 18 17 16 21 21 C 1.54228 * 103.55293 * 0.38766 * 20 18 17 22 22 C 1.33878 * 122.76416 * 89.99895 * 17 16 15 23 23 O 1.21225 * 125.39157 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47109 * 299.99718 * 15 13 12 29 29 H 1.08998 * 109.47275 * 60.00156 * 15 13 12 30 30 H 1.09002 * 109.46702 * 299.99447 * 16 15 13 31 31 H 1.08998 * 109.47070 * 60.00035 * 16 15 13 32 32 H 1.08997 * 110.80156 * 241.78001 * 20 18 17 33 33 H 1.09003 * 110.55100 * 118.87081 * 20 18 17 34 34 H 1.09001 * 110.60719 * 241.25723 * 21 20 18 35 35 H 1.09005 * 110.60726 * 118.29382 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9974 1.2516 -2.2507 15 6 2.7183 -0.5774 -3.5495 16 6 2.8624 0.4887 -4.6375 17 7 3.3490 -0.1348 -5.8707 18 6 4.6512 -0.2506 -6.1588 19 8 5.5625 0.1341 -5.4580 20 6 4.8055 -0.9408 -7.4965 21 6 3.3511 -1.1975 -7.9407 22 6 2.5280 -0.6305 -6.8047 23 8 1.3170 -0.6261 -6.7489 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 3.6872 -1.0410 -3.3640 29 1 2.0088 -1.3370 -3.8775 30 1 1.8933 0.9519 -4.8229 31 1 3.5717 1.2487 -4.3097 32 1 5.3448 -1.8816 -7.3867 33 1 5.3142 -0.2890 -8.2069 34 1 3.1668 -2.2660 -8.0519 35 1 3.1354 -0.6712 -8.8706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:58 Heat of formation + Delta-G solvation = -158.913018 kcal Electronic energy + Delta-G solvation = -20301.026988 eV Core-core repulsion = 16878.454655 eV Total energy + Delta-G solvation = -3422.572333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12738 -39.56415 -38.80383 -36.22961 -35.86277 -34.31527 -33.26873 -30.90595 -29.44252 -26.50834 -25.37845 -25.02566 -22.65922 -21.60854 -19.75241 -19.52173 -17.77859 -17.21550 -16.75317 -16.71945 -16.46519 -15.54281 -15.38736 -14.76242 -14.50257 -14.48759 -14.22950 -14.10149 -13.62298 -13.15597 -12.91416 -12.62382 -12.10188 -11.81326 -11.78219 -11.36280 -11.17621 -11.08001 -10.90884 -10.82588 -10.36704 -10.29356 -10.28759 -10.11453 -9.66878 -9.55441 -8.90795 -8.50101 -6.18842 -4.25790 1.23008 2.19398 2.41669 2.92673 3.23858 3.30382 3.35431 3.65375 3.72799 3.88415 4.04668 4.33570 4.43004 4.76750 4.87609 5.03825 5.13660 5.15950 5.16568 5.23255 5.34984 5.59926 5.77411 5.87182 6.57705 6.63376 6.88487 6.90443 7.04109 7.14855 7.49043 7.59217 7.71876 7.91935 8.13008 8.59193 8.86508 9.39693 10.88706 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.003711 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.703626 B = 7543.407145 C = 7898.833463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.355 6.355 13 C 0.460 3.540 14 O -0.521 6.521 15 C -0.131 4.131 16 C 0.111 3.889 17 N -0.574 5.574 18 C 0.523 3.477 19 O -0.476 6.476 20 C -0.156 4.156 21 C -0.156 4.156 22 C 0.523 3.477 23 O -0.477 6.477 24 H 0.016 0.984 25 H 0.100 0.900 26 H 0.037 0.963 27 H 0.266 0.734 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 -4.835 -21.364 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.271 6.271 13 C 0.303 3.697 14 O -0.412 6.412 15 C -0.170 4.170 16 C -0.010 4.010 17 N -0.317 5.317 18 C 0.312 3.688 19 O -0.346 6.346 20 C -0.196 4.196 21 C -0.196 4.196 22 C 0.312 3.688 23 O -0.348 6.348 24 H 0.035 0.965 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.687 -4.145 -20.712 21.875 hybrid contribution 0.150 -0.277 0.960 1.010 sum 5.837 -4.423 -19.752 21.066 Atomic orbital electron populations 1.22164 0.97467 1.00163 1.01477 1.20687 0.91468 0.93980 0.77688 0.93438 1.21071 1.32481 1.13495 0.88873 0.91238 1.24897 0.94916 0.95101 0.99101 1.69908 1.36075 1.22598 1.24102 0.86208 0.78629 0.79489 0.81740 1.19468 1.20718 1.20696 1.86484 1.75612 1.43631 1.21332 1.22881 0.74978 0.85875 0.86014 1.90615 1.48937 1.16815 1.84834 1.21554 1.04419 0.99679 0.91356 1.21573 1.03221 0.95099 0.81100 1.46826 1.09525 1.54405 1.20990 1.20877 0.81626 0.77922 0.88392 1.90822 1.42594 1.46543 1.54672 1.22476 0.98094 1.03994 0.95055 1.22480 0.93331 1.05121 0.98675 1.20882 0.87444 0.76502 0.83959 1.90816 1.12332 1.53480 1.78140 0.96461 0.88177 0.94399 0.92428 0.87685 0.87773 0.87719 0.87650 0.86022 0.86171 0.86046 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.33 37.16 0.35 -3.67 16 2 C 0.21 5.87 2.56 -27.88 -0.07 5.80 16 3 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 4 C -0.52 -14.88 8.90 -34.44 -0.31 -15.19 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 O -0.35 -8.61 9.86 -39.27 -0.39 -9.00 16 13 C 0.46 9.68 7.93 36.01 0.29 9.96 16 14 O -0.52 -12.24 15.20 -18.75 -0.29 -12.52 16 15 C -0.13 -1.99 6.14 -27.88 -0.17 -2.16 16 16 C 0.11 1.51 4.85 -4.04 -0.02 1.49 16 17 N -0.57 -6.16 2.55 -115.34 -0.29 -6.45 16 18 C 0.52 5.09 8.07 -11.09 -0.09 5.00 16 19 O -0.48 -6.52 17.47 5.60 0.10 -6.43 16 20 C -0.16 -0.66 7.03 -26.94 -0.19 -0.85 16 21 C -0.16 -0.65 7.03 -26.94 -0.19 -0.84 16 22 C 0.52 5.05 8.08 -11.09 -0.09 4.96 16 23 O -0.48 -6.45 17.48 5.60 0.10 -6.35 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.10 2.75 6.07 -51.93 -0.32 2.44 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.10 1.50 7.78 -51.93 -0.40 1.09 16 31 H 0.11 1.52 7.78 -51.93 -0.40 1.12 16 32 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -34.93 310.00 -5.50 -40.43 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.42 Total: -1.85 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.59 Total: 6.14 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.33 Total: -31.38 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.48 Total: -34.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.93 -5.50 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.479 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds