Wall clock time and date at job start Mon Mar 30 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34235 * 116.99354 * 90.00249 * 12 2 1 14 14 O 1.20826 * 120.00385 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99606 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.46811 * 179.97438 * 15 13 12 17 17 N 1.46503 * 109.46828 * 180.02562 * 16 15 13 18 18 C 1.33870 * 122.75764 * 269.70652 * 17 16 15 19 19 O 1.21227 * 125.40327 * 359.97438 * 18 17 16 20 20 C 1.51313 * 109.20670 * 179.84247 * 18 17 16 21 21 C 1.54228 * 103.55293 * 0.38766 * 20 18 17 22 22 C 1.33878 * 122.76416 * 89.99895 * 17 16 15 23 23 O 1.21225 * 125.39157 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47109 * 299.99718 * 15 13 12 29 29 H 1.08998 * 109.47275 * 60.00156 * 15 13 12 30 30 H 1.09002 * 109.46702 * 299.99447 * 16 15 13 31 31 H 1.08998 * 109.47070 * 60.00035 * 16 15 13 32 32 H 1.08997 * 110.80156 * 241.78001 * 20 18 17 33 33 H 1.09003 * 110.55100 * 118.87081 * 20 18 17 34 34 H 1.09001 * 110.60719 * 241.25723 * 21 20 18 35 35 H 1.09005 * 110.60726 * 118.29382 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9974 1.2516 -2.2507 15 6 2.7183 -0.5774 -3.5495 16 6 2.8624 0.4887 -4.6375 17 7 3.3490 -0.1348 -5.8707 18 6 4.6512 -0.2506 -6.1588 19 8 5.5625 0.1341 -5.4580 20 6 4.8055 -0.9408 -7.4965 21 6 3.3511 -1.1975 -7.9407 22 6 2.5280 -0.6305 -6.8047 23 8 1.3170 -0.6261 -6.7489 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 3.6872 -1.0410 -3.3640 29 1 2.0088 -1.3370 -3.8775 30 1 1.8933 0.9519 -4.8229 31 1 3.5717 1.2487 -4.3097 32 1 5.3448 -1.8816 -7.3867 33 1 5.3142 -0.2890 -8.2069 34 1 3.1668 -2.2660 -8.0519 35 1 3.1354 -0.6712 -8.8706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113691410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:58 Heat of formation + Delta-G solvation = -182.681329 kcal Electronic energy + Delta-G solvation = -20302.057659 eV Core-core repulsion = 16878.454655 eV Total energy + Delta-G solvation = -3423.603004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.90960 -41.37745 -39.66427 -37.87002 -36.99944 -35.39993 -35.19824 -32.19743 -31.27818 -27.51298 -27.08644 -26.32804 -23.46662 -23.29602 -21.47492 -20.47393 -19.09270 -18.71406 -18.08286 -17.83382 -17.61934 -17.15789 -17.09912 -16.30928 -15.64686 -15.30684 -15.16650 -14.92964 -14.85603 -14.69280 -14.22037 -13.90116 -13.60752 -13.42295 -13.23548 -13.03753 -12.85118 -12.53530 -12.43611 -12.17290 -12.05013 -11.75138 -11.65226 -11.50296 -11.09128 -11.05834 -10.97304 -10.64128 -8.32325 -6.49780 0.49684 1.19018 1.29296 1.41011 1.41356 1.55682 1.67651 2.06867 2.40080 2.98403 3.22248 3.29374 3.47473 3.67120 3.74446 3.86007 4.20165 4.23479 4.27313 4.40967 4.49391 4.69064 4.73325 4.77856 4.82684 4.96074 4.98958 5.10038 5.44391 5.57318 5.80808 5.85872 6.01542 6.32776 6.54344 6.70910 6.84698 7.21901 8.75832 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.035583 B = 0.003711 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.703626 B = 7543.407145 C = 7898.833463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.551 4.551 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.986 3.014 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.270 1.270 12 O -0.362 6.362 13 C 0.453 3.547 14 O -0.550 6.550 15 C -0.113 4.113 16 C 0.114 3.886 17 N -0.579 5.579 18 C 0.517 3.483 19 O -0.524 6.524 20 C -0.137 4.137 21 C -0.137 4.137 22 C 0.517 3.483 23 O -0.523 6.523 24 H 0.023 0.977 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.272 0.728 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.146 -6.882 -23.105 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.809 3.191 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.195 1.195 12 O -0.279 6.279 13 C 0.298 3.702 14 O -0.442 6.442 15 C -0.151 4.151 16 C -0.008 4.008 17 N -0.322 5.322 18 C 0.309 3.691 19 O -0.398 6.398 20 C -0.176 4.176 21 C -0.176 4.176 22 C 0.309 3.691 23 O -0.397 6.397 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.814 -6.203 -22.507 24.320 hybrid contribution -0.201 0.430 1.434 1.511 sum 6.612 -5.773 -21.073 22.828 Atomic orbital electron populations 1.21991 0.96616 1.00507 1.00913 1.20420 0.92160 0.92179 0.79075 0.97305 1.21334 1.33558 1.13984 0.89926 0.91399 1.25870 0.94643 0.95665 1.02230 1.70023 1.36511 1.23673 1.25276 0.85091 0.78378 0.78386 0.77270 1.18702 1.20038 1.19508 1.86475 1.76053 1.43777 1.21546 1.24008 0.73935 0.85709 0.86577 1.90596 1.50077 1.18275 1.85227 1.21569 1.05160 1.00004 0.88396 1.21259 1.02402 0.94619 0.82536 1.47052 1.10663 1.54402 1.20041 1.21966 0.80283 0.76949 0.89924 1.90803 1.43651 1.48688 1.56643 1.22615 0.98685 1.04930 0.91364 1.22621 0.91448 1.06632 0.96856 1.21958 0.87129 0.75303 0.84671 1.90798 1.14495 1.55299 1.79122 0.95768 0.89909 0.93436 0.91898 0.86112 0.85858 0.88965 0.89144 0.83239 0.83334 0.83231 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 9.33 71.98 0.67 -6.91 16 2 C 0.21 12.20 2.56 29.85 0.08 12.28 16 3 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 4 C -0.55 -32.04 8.90 25.60 0.23 -31.81 16 5 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 8 Si 0.99 43.49 29.54 68.60 2.03 45.51 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 O -0.36 -18.08 9.86 -51.46 -0.51 -18.59 16 13 C 0.45 19.71 7.93 71.24 0.56 20.27 16 14 O -0.55 -27.12 15.20 21.96 0.33 -26.79 16 15 C -0.11 -3.44 6.14 29.85 0.18 -3.25 16 16 C 0.11 3.21 4.85 86.38 0.42 3.63 16 17 N -0.58 -11.85 2.55 -756.66 -1.93 -13.78 16 18 C 0.52 9.14 8.07 87.99 0.71 9.85 16 19 O -0.52 -14.15 17.47 -2.87 -0.05 -14.20 16 20 C -0.14 -0.52 7.03 30.46 0.21 -0.31 16 21 C -0.14 -0.50 7.03 30.46 0.21 -0.29 16 22 C 0.52 8.99 8.08 87.99 0.71 9.70 16 23 O -0.52 -13.80 17.48 -2.86 -0.05 -13.85 16 24 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 4.69 6.07 -2.39 -0.01 4.68 16 26 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.09 2.79 7.78 -2.39 -0.02 2.77 16 31 H 0.09 2.78 7.78 -2.39 -0.02 2.76 16 32 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.15 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: -1.00 -80.26 310.00 5.61 -74.65 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.10 Total: 5.86 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 4.44 Total: 14.48 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -1.69 Total: -67.08 kcal Atomic # 8 Polarization: -73.16 SS G_CDS: -0.27 Total: -73.43 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -80.26 5.61 -74.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.028 kcal (2) G-P(sol) polarization free energy of solvation -80.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds