Wall clock time and date at job start Mon Mar 30 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47507 * 2 1 4 4 C 1.50698 * 109.47349 * 239.99613 * 2 1 3 5 5 H 1.07995 * 120.00319 * 275.00033 * 4 2 1 6 6 C 1.37883 * 119.99835 * 94.99928 * 4 2 1 7 7 N 1.31515 * 119.99979 * 184.91803 * 6 4 2 8 8 Si 1.86807 * 119.99874 * 4.91565 * 6 4 2 9 9 H 1.48489 * 109.46994 * 84.83607 * 8 6 4 10 10 H 1.48501 * 109.46734 * 204.83645 * 8 6 4 11 11 H 1.48500 * 109.47074 * 324.83537 * 8 6 4 12 12 O 1.45202 * 109.47167 * 119.99970 * 2 1 3 13 13 C 1.34230 * 117.00051 * 269.99783 * 12 2 1 14 14 O 1.20823 * 119.99803 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99965 * 179.72252 * 13 12 2 16 16 C 1.53003 * 109.46954 * 180.27995 * 15 13 12 17 17 N 1.46499 * 109.47070 * 179.97438 * 16 15 13 18 18 C 1.33878 * 122.76552 * 269.71061 * 17 16 15 19 19 O 1.21226 * 125.39233 * 359.97281 * 18 17 16 20 20 C 1.51310 * 109.20591 * 179.84177 * 18 17 16 21 21 C 1.54227 * 103.55764 * 0.38695 * 20 18 17 22 22 C 1.33879 * 122.76297 * 89.99838 * 17 16 15 23 23 O 1.21228 * 125.39356 * 359.97438 * 22 17 16 24 24 H 1.09004 * 109.47338 * 175.03409 * 1 2 3 25 25 H 1.08998 * 109.47475 * 295.03336 * 1 2 3 26 26 H 1.08999 * 109.47114 * 55.03413 * 1 2 3 27 27 H 0.97004 * 119.99484 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47293 * 300.27687 * 15 13 12 29 29 H 1.08994 * 109.47143 * 60.27900 * 15 13 12 30 30 H 1.08997 * 109.46869 * 299.99951 * 16 15 13 31 31 H 1.08994 * 109.47273 * 59.99985 * 16 15 13 32 32 H 1.09002 * 110.79618 * 241.77590 * 20 18 17 33 33 H 1.09007 * 110.54702 * 118.87311 * 20 18 17 34 34 H 1.08998 * 110.60240 * 241.26044 * 21 20 18 35 35 H 1.09003 * 110.60668 * 118.29509 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3134 1.8791 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1055 2.3989 -3.6929 11 1 1.1985 2.3274 -1.4450 12 8 2.0139 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7128 -0.5782 3.5511 16 6 2.8521 0.4871 4.6406 17 7 3.3334 -0.1373 5.8754 18 6 2.5083 -0.6287 6.8081 19 8 1.2974 -0.6186 6.7500 20 6 3.3266 -1.2015 7.9446 21 6 4.7829 -0.9444 7.5070 22 6 4.6345 -0.2584 6.1665 23 8 5.5489 0.1211 5.4669 24 1 -0.3634 -1.0238 -0.0890 25 1 -0.3634 0.4348 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 2.9362 -0.1049 -4.2556 28 1 2.0022 -1.3385 3.8752 29 1 3.6827 -1.0412 3.3696 30 1 3.5627 1.2474 4.3165 31 1 1.8822 0.9501 4.8221 32 1 3.1419 -2.2702 8.0542 33 1 3.1077 -0.6782 8.8754 34 1 5.3227 -1.8851 7.3988 35 1 5.2876 -0.2909 8.2186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:01 Heat of formation + Delta-G solvation = -157.879178 kcal Electronic energy + Delta-G solvation = -20399.981802 eV Core-core repulsion = 16977.454300 eV Total energy + Delta-G solvation = -3422.527502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.15585 -39.70921 -38.83046 -36.29434 -35.96187 -34.36442 -33.10034 -31.12868 -30.25579 -26.53068 -25.49092 -25.08505 -22.68511 -21.54162 -19.77118 -19.58732 -17.91932 -17.25579 -17.17248 -16.77372 -16.46616 -15.75495 -15.58592 -14.81370 -14.51371 -14.41389 -14.25427 -14.03595 -13.70388 -13.14533 -12.98782 -12.61716 -12.55525 -12.25212 -11.80834 -11.74704 -11.31652 -11.13323 -11.00988 -10.90913 -10.72461 -10.32046 -10.18056 -10.02258 -9.75172 -9.50602 -9.15269 -8.73491 -6.29087 -4.33261 1.20520 2.15726 2.38946 2.80651 3.20310 3.28521 3.34067 3.53072 3.70605 3.85509 4.02579 4.25245 4.41006 4.71456 4.82745 5.00518 5.02147 5.13638 5.14886 5.21133 5.30096 5.54813 5.63483 5.81963 6.15690 6.40754 6.49288 6.54467 6.67055 7.01382 7.12931 7.33501 7.46130 7.50287 8.20006 8.57987 8.80917 9.29863 10.82191 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.004104 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.627620 B = 6821.260281 C = 7110.373891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 H 0.048 0.952 4 C -0.520 4.520 5 H 0.086 0.914 6 C 0.083 3.917 7 N -0.881 5.881 8 Si 0.870 3.130 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.261 1.261 12 O -0.346 6.346 13 C 0.460 3.540 14 O -0.527 6.527 15 C -0.133 4.133 16 C 0.111 3.889 17 N -0.574 5.574 18 C 0.524 3.476 19 O -0.478 6.478 20 C -0.156 4.156 21 C -0.156 4.156 22 C 0.523 3.477 23 O -0.475 6.475 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -1.186 23.805 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.128 3.872 3 H 0.066 0.934 4 C -0.557 4.557 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.696 3.304 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.185 1.185 12 O -0.261 6.261 13 C 0.302 3.698 14 O -0.418 6.418 15 C -0.171 4.171 16 C -0.010 4.010 17 N -0.318 5.318 18 C 0.313 3.687 19 O -0.349 6.349 20 C -0.196 4.196 21 C -0.196 4.196 22 C 0.311 3.689 23 O -0.345 6.345 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.545 -0.602 23.087 23.234 hybrid contribution -0.008 1.042 -0.273 1.077 sum 2.537 0.440 22.814 22.959 Atomic orbital electron populations 1.22235 0.97421 1.01659 0.99734 1.21038 0.91530 0.94162 0.80447 0.93442 1.20801 1.45495 0.96345 0.93044 0.89634 1.24916 0.93462 0.98664 0.95162 1.69855 1.43931 1.36269 1.01694 0.86950 0.79967 0.85719 0.77772 1.19522 1.20652 1.18499 1.86668 1.75332 1.43469 1.20676 1.23031 0.74685 0.85951 0.86107 1.90600 1.49341 1.16915 1.84962 1.21583 1.04668 0.99721 0.91157 1.21568 1.03257 0.95099 0.81095 1.46825 1.09545 1.54499 1.20902 1.20879 0.87389 0.76495 0.83958 1.90812 1.12340 1.53563 1.78139 1.22476 0.93357 1.05115 0.98665 1.22480 0.98083 1.04043 0.94992 1.20895 0.81621 0.77877 0.88460 1.90828 1.42305 1.46574 1.54831 0.92351 0.95098 0.91915 0.91935 0.87633 0.87475 0.87689 0.87746 0.85997 0.86172 0.85996 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.53 37.15 0.35 -3.11 16 2 C 0.18 4.62 2.22 -27.89 -0.06 4.56 16 3 H 0.05 1.26 4.31 -51.93 -0.22 1.04 16 4 C -0.52 -14.96 9.25 -34.44 -0.32 -15.28 16 5 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 6 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 7 N -0.88 -26.42 13.96 55.43 0.77 -25.64 16 8 Si 0.87 21.70 26.99 -169.99 -4.59 17.11 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.35 6.82 56.52 0.39 -5.96 16 12 O -0.35 -8.09 9.86 -39.26 -0.39 -8.48 16 13 C 0.46 9.28 7.93 36.01 0.29 9.56 16 14 O -0.53 -11.74 15.20 -18.75 -0.28 -12.02 16 15 C -0.13 -1.95 6.14 -27.88 -0.17 -2.12 16 16 C 0.11 1.46 4.85 -4.04 -0.02 1.44 16 17 N -0.57 -6.00 2.55 -115.35 -0.29 -6.30 16 18 C 0.52 4.89 8.08 -11.09 -0.09 4.81 16 19 O -0.48 -6.27 17.47 5.60 0.10 -6.17 16 20 C -0.16 -0.62 7.03 -26.94 -0.19 -0.81 16 21 C -0.16 -0.64 7.03 -26.94 -0.19 -0.83 16 22 C 0.52 5.01 8.08 -11.09 -0.09 4.92 16 23 O -0.47 -6.49 17.48 5.60 0.10 -6.39 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.10 1.47 7.79 -51.93 -0.40 1.07 16 31 H 0.10 1.43 7.78 -51.93 -0.40 1.02 16 32 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -35.51 309.65 -4.92 -40.42 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.41 Total: -2.65 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.59 Total: 5.45 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.48 Total: -31.94 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.48 Total: -33.07 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.59 Total: 17.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.51 -4.92 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.455 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds