Wall clock time and date at job start Mon Mar 30 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47507 * 2 1 4 4 C 1.50698 * 109.47349 * 239.99613 * 2 1 3 5 5 H 1.07995 * 120.00319 * 275.00033 * 4 2 1 6 6 C 1.37883 * 119.99835 * 94.99928 * 4 2 1 7 7 N 1.31515 * 119.99979 * 184.91803 * 6 4 2 8 8 Si 1.86807 * 119.99874 * 4.91565 * 6 4 2 9 9 H 1.48489 * 109.46994 * 84.83607 * 8 6 4 10 10 H 1.48501 * 109.46734 * 204.83645 * 8 6 4 11 11 H 1.48500 * 109.47074 * 324.83537 * 8 6 4 12 12 O 1.45202 * 109.47167 * 119.99970 * 2 1 3 13 13 C 1.34230 * 117.00051 * 269.99783 * 12 2 1 14 14 O 1.20823 * 119.99803 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99965 * 179.72252 * 13 12 2 16 16 C 1.53003 * 109.46954 * 180.27995 * 15 13 12 17 17 N 1.46499 * 109.47070 * 179.97438 * 16 15 13 18 18 C 1.33878 * 122.76552 * 269.71061 * 17 16 15 19 19 O 1.21226 * 125.39233 * 359.97281 * 18 17 16 20 20 C 1.51310 * 109.20591 * 179.84177 * 18 17 16 21 21 C 1.54227 * 103.55764 * 0.38695 * 20 18 17 22 22 C 1.33879 * 122.76297 * 89.99838 * 17 16 15 23 23 O 1.21228 * 125.39356 * 359.97438 * 22 17 16 24 24 H 1.09004 * 109.47338 * 175.03409 * 1 2 3 25 25 H 1.08998 * 109.47475 * 295.03336 * 1 2 3 26 26 H 1.08999 * 109.47114 * 55.03413 * 1 2 3 27 27 H 0.97004 * 119.99484 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47293 * 300.27687 * 15 13 12 29 29 H 1.08994 * 109.47143 * 60.27900 * 15 13 12 30 30 H 1.08997 * 109.46869 * 299.99951 * 16 15 13 31 31 H 1.08994 * 109.47273 * 59.99985 * 16 15 13 32 32 H 1.09002 * 110.79618 * 241.77590 * 20 18 17 33 33 H 1.09007 * 110.54702 * 118.87311 * 20 18 17 34 34 H 1.08998 * 110.60240 * 241.26044 * 21 20 18 35 35 H 1.09003 * 110.60668 * 118.29509 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3134 1.8791 -2.3175 9 1 3.5989 2.3949 -1.7823 10 1 2.1055 2.3989 -3.6929 11 1 1.1985 2.3274 -1.4450 12 8 2.0139 -0.6845 1.1856 13 6 2.2171 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7128 -0.5782 3.5511 16 6 2.8521 0.4871 4.6406 17 7 3.3334 -0.1373 5.8754 18 6 2.5083 -0.6287 6.8081 19 8 1.2974 -0.6186 6.7500 20 6 3.3266 -1.2015 7.9446 21 6 4.7829 -0.9444 7.5070 22 6 4.6345 -0.2584 6.1665 23 8 5.5489 0.1211 5.4669 24 1 -0.3634 -1.0238 -0.0890 25 1 -0.3634 0.4348 0.9311 26 1 -0.3633 0.5889 -0.8422 27 1 2.9362 -0.1049 -4.2556 28 1 2.0022 -1.3385 3.8752 29 1 3.6827 -1.0412 3.3696 30 1 3.5627 1.2474 4.3165 31 1 1.8822 0.9501 4.8221 32 1 3.1419 -2.2702 8.0542 33 1 3.1077 -0.6782 8.8754 34 1 5.3227 -1.8851 7.3988 35 1 5.2876 -0.2909 8.2186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113691412.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:01 Heat of formation + Delta-G solvation = -182.790676 kcal Electronic energy + Delta-G solvation = -20401.062046 eV Core-core repulsion = 16977.454300 eV Total energy + Delta-G solvation = -3423.607746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.91019 -41.43145 -39.66496 -37.90743 -36.99889 -35.29017 -35.15846 -32.78912 -31.57065 -27.52212 -27.08790 -26.33650 -23.29984 -23.28042 -21.47499 -20.47574 -19.53899 -18.76463 -18.20529 -17.83024 -17.63407 -17.29277 -17.09772 -16.19065 -15.61925 -15.30922 -15.20259 -14.97229 -14.86033 -14.69648 -14.46913 -14.27961 -13.68648 -13.54639 -13.42087 -13.06933 -12.96147 -12.64087 -12.53053 -12.05521 -12.01793 -11.74724 -11.58543 -11.44451 -11.25513 -11.09095 -10.98782 -10.91407 -8.51058 -6.61328 0.49555 1.15420 1.21743 1.26268 1.30580 1.36517 1.67373 2.03081 2.16340 2.86820 3.22158 3.29251 3.47658 3.66784 3.74827 3.81839 4.14834 4.21262 4.23819 4.29331 4.41373 4.53272 4.58390 4.69509 4.82408 4.83974 4.95584 4.98610 5.26270 5.33446 5.58288 5.80385 6.09796 6.32349 6.47098 6.70569 6.79393 7.06511 8.64331 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.032602 B = 0.004104 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.627620 B = 6821.260281 C = 7110.373891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.036 3.964 7 N -0.921 5.921 8 Si 0.929 3.071 9 H -0.270 1.270 10 H -0.264 1.264 11 H -0.250 1.250 12 O -0.360 6.360 13 C 0.455 3.545 14 O -0.548 6.548 15 C -0.117 4.117 16 C 0.114 3.886 17 N -0.579 5.579 18 C 0.518 3.482 19 O -0.522 6.522 20 C -0.138 4.138 21 C -0.138 4.138 22 C 0.516 3.484 23 O -0.524 6.524 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.277 0.723 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -1.031 26.715 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.056 0.944 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.165 4.165 7 N -0.559 5.559 8 Si 0.751 3.249 9 H -0.195 1.195 10 H -0.188 1.188 11 H -0.174 1.174 12 O -0.276 6.276 13 C 0.299 3.701 14 O -0.439 6.439 15 C -0.155 4.155 16 C -0.009 4.009 17 N -0.322 5.322 18 C 0.310 3.690 19 O -0.396 6.396 20 C -0.176 4.176 21 C -0.177 4.177 22 C 0.308 3.692 23 O -0.398 6.398 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.810 -0.466 26.038 26.193 hybrid contribution -0.070 0.926 -1.112 1.449 sum 2.739 0.461 24.926 25.080 Atomic orbital electron populations 1.22143 0.95219 1.02301 1.00819 1.20866 0.93120 0.93045 0.80229 0.94375 1.20925 1.46204 0.94931 0.95121 0.93358 1.25664 0.92935 1.03344 0.94561 1.69955 1.45094 1.38318 1.02523 0.86020 0.80158 0.79934 0.78759 1.19507 1.18842 1.17433 1.86623 1.75945 1.43867 1.21166 1.23980 0.73803 0.85790 0.86493 1.90580 1.50179 1.17944 1.85245 1.21599 1.05202 1.00152 0.88588 1.21286 1.02631 0.94566 0.82367 1.47046 1.10597 1.54486 1.20057 1.21910 0.87069 0.75333 0.84641 1.90794 1.14397 1.55305 1.79091 1.22613 0.91483 1.06579 0.96961 1.22618 0.98731 1.04918 0.91396 1.21962 0.80354 0.76882 0.89960 1.90808 1.43417 1.48780 1.56810 0.91886 0.93351 0.91510 0.91335 0.85755 0.86445 0.89106 0.88581 0.83284 0.83300 0.83401 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 9.53 71.98 0.69 -5.88 16 2 C 0.18 9.29 2.22 29.84 0.07 9.36 16 3 H 0.04 2.03 4.31 -2.39 -0.01 2.02 16 4 C -0.53 -31.59 9.25 25.60 0.24 -31.35 16 5 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 6 C 0.04 2.12 5.47 84.66 0.46 2.58 16 7 N -0.92 -56.29 13.96 21.45 0.30 -55.99 16 8 Si 0.93 44.73 26.99 68.60 1.85 46.58 16 9 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.25 -11.58 6.82 99.48 0.68 -10.90 16 12 O -0.36 -17.02 9.86 -51.42 -0.51 -17.52 16 13 C 0.45 18.40 7.93 71.24 0.56 18.97 16 14 O -0.55 -24.46 15.20 21.97 0.33 -24.13 16 15 C -0.12 -3.38 6.14 29.85 0.18 -3.20 16 16 C 0.11 3.01 4.85 86.38 0.42 3.42 16 17 N -0.58 -11.31 2.55 -756.68 -1.93 -13.24 16 18 C 0.52 8.52 8.08 87.99 0.71 9.23 16 19 O -0.52 -13.09 17.47 -2.86 -0.05 -13.14 16 20 C -0.14 -0.44 7.03 30.46 0.21 -0.23 16 21 C -0.14 -0.50 7.03 30.46 0.21 -0.28 16 22 C 0.52 8.91 8.08 87.99 0.71 9.62 16 23 O -0.52 -14.02 17.48 -2.87 -0.05 -14.07 16 24 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.09 2.63 7.79 -2.39 -0.02 2.61 16 31 H 0.10 2.67 7.78 -2.39 -0.02 2.65 16 32 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.15 -0.22 8.14 -2.38 -0.02 -0.24 16 34 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -80.77 309.65 5.49 -75.28 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.08 Total: 4.00 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 4.47 Total: 12.24 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.63 Total: -69.24 kcal Atomic # 8 Polarization: -68.59 SS G_CDS: -0.27 Total: -68.87 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.85 Total: 46.58 kcal Total: -80.77 5.49 -75.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691412.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.509 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds