Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21326 * 119.99799 * 2 1 4 4 C 1.46670 * 119.99919 * 179.97438 * 2 1 3 5 5 C 1.40061 * 120.10296 * 353.27719 * 4 2 1 6 6 C 1.36430 * 120.20091 * 179.97438 * 5 4 2 7 7 C 1.40009 * 120.40275 * 359.97438 * 6 5 4 8 8 C 1.43194 * 119.90772 * 180.02562 * 7 6 5 9 9 N 6.81197 * 119.71033 * 179.97438 * 2 1 3 10 10 C 1.39275 * 120.18928 * 359.79279 * 7 6 5 11 11 C 1.38921 * 119.80241 * 0.43979 * 10 7 6 12 12 N 1.38455 * 120.19766 * 179.81680 * 11 10 7 13 13 C 1.36659 * 119.99793 * 269.72271 * 12 11 10 14 14 H 1.08004 * 119.99695 * 185.57237 * 13 12 11 15 15 C 1.38966 * 120.00034 * 5.56501 * 13 12 11 16 16 N 1.31461 * 120.00197 * 6.36121 * 15 13 12 17 17 Si 1.86801 * 119.99895 * 186.35462 * 15 13 12 18 18 H 1.48498 * 109.46990 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47120 * 120.00681 * 17 15 13 20 20 H 1.48504 * 109.46915 * 240.00158 * 17 15 13 21 21 C 1.46493 * 119.99954 * 89.72440 * 12 11 10 22 22 C 1.47194 * 109.47654 * 84.88570 * 21 12 11 23 23 N 3.16863 * 108.22533 * 308.38065 * 2 1 3 24 24 H 1.08996 * 109.47207 * 174.53480 * 1 2 3 25 25 H 1.09008 * 109.46954 * 294.53466 * 1 2 3 26 26 H 1.09000 * 109.47468 * 54.53162 * 1 2 3 27 27 H 1.08000 * 119.90096 * 0.02562 * 5 4 2 28 28 H 1.07995 * 119.80474 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.09440 * 180.25299 * 10 7 6 30 30 H 0.97002 * 120.00259 * 179.97438 * 16 15 13 31 31 H 1.09008 * 109.47180 * 324.88160 * 21 12 11 32 32 H 1.09008 * 109.46998 * 204.88666 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2404 -1.2702 0.0006 5 6 1.5494 -2.4802 0.1430 6 6 2.2295 -3.6629 0.1432 7 6 3.6222 -3.6794 0.0009 8 6 4.3253 -4.9269 0.0021 9 7 4.8831 -5.9165 0.0026 10 6 4.3254 -2.4863 -0.1466 11 6 3.6417 -1.2770 -0.1432 12 7 4.3329 -0.0858 -0.2855 13 6 4.7945 0.5725 0.8196 14 1 5.2538 1.5446 0.7164 15 6 4.6727 -0.0087 2.0760 16 7 4.2292 -1.2410 2.1900 17 14 5.1394 0.9611 3.6028 18 1 5.6060 2.3140 3.2065 19 1 3.9556 1.0865 4.4906 20 1 6.2270 0.2536 4.3253 21 6 4.5693 0.4689 -1.6206 22 6 3.3994 1.2585 -2.0382 23 7 2.4980 1.8687 -2.3593 24 1 -0.3633 -1.0230 -0.0979 25 1 -0.3633 0.4268 0.9350 26 1 -0.3634 0.5963 -0.8369 27 1 0.4750 -2.4770 0.2520 28 1 1.6903 -4.5921 0.2530 29 1 5.3993 -2.5011 -0.2604 30 1 4.1446 -1.6468 3.0670 31 1 4.7304 -0.3442 -2.3285 32 1 5.4507 1.1099 -1.5968 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131233539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = 95.409972 kcal Electronic energy + Delta-G solvation = -20315.192556 eV Core-core repulsion = 17243.250166 eV Total energy + Delta-G solvation = -3071.942390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.56683 -37.52129 -36.55291 -35.69682 -34.81567 -31.69358 -31.41624 -29.60266 -28.81186 -26.90472 -24.27581 -23.54840 -21.17210 -19.45292 -18.70332 -17.20701 -16.53253 -15.83429 -15.42965 -15.02273 -14.32075 -14.22247 -13.76603 -13.65009 -13.47169 -13.34365 -13.08483 -12.87405 -12.37941 -12.10730 -12.03047 -11.72685 -11.63556 -11.50067 -11.24056 -11.05899 -10.91088 -10.81434 -10.65378 -10.21147 -10.09313 -9.42131 -8.68456 -8.15373 -7.92251 -7.50298 -5.90400 -3.53675 1.19873 2.26872 2.94394 3.15734 3.26101 3.34126 3.35562 3.54522 3.66210 3.82475 4.30481 4.46213 4.72523 4.88765 4.92300 5.07064 5.28721 5.44695 5.58542 5.69869 5.87108 5.88132 6.05192 6.07316 6.15929 6.41983 6.44843 6.68236 6.86541 7.01911 7.36747 7.44097 7.48958 7.93051 7.99513 8.44274 8.54669 8.92896 9.37648 9.76812 10.97378 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.010309 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.694182 B = 2715.390181 C = 3581.360402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.375 3.625 3 O -0.415 6.415 4 C -0.164 4.164 5 C -0.085 4.085 6 C -0.114 4.114 7 C -0.023 4.023 8 C 0.275 3.725 9 N -0.456 5.456 10 C -0.035 4.035 11 C 0.343 3.657 12 N -0.545 5.545 13 C -0.239 4.239 14 H 0.089 0.911 15 C 0.002 3.998 16 N -0.898 5.898 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.237 3.763 22 C 0.200 3.800 23 N -0.463 5.463 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 -1.889 -4.877 6.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.251 3.749 3 O -0.288 6.288 4 C -0.169 4.169 5 C -0.104 4.104 6 C -0.135 4.135 7 C -0.028 4.028 8 C -0.039 4.039 9 N -0.133 5.133 10 C -0.059 4.059 11 C 0.247 3.753 12 N -0.260 5.260 13 C -0.366 4.366 14 H 0.107 0.893 15 C -0.196 4.196 16 N -0.542 5.542 17 Si 0.748 3.252 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.108 3.892 22 C -0.119 4.119 23 N -0.143 5.143 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.451 -1.970 -5.121 6.482 hybrid contribution 0.027 0.486 1.596 1.669 sum -3.424 -1.484 -3.525 5.133 Atomic orbital electron populations 1.22210 0.96234 1.03519 1.03577 1.22053 0.90322 0.88702 0.73852 1.90599 1.71076 1.33812 1.33288 1.21086 0.95209 0.94044 1.06563 1.20632 0.98800 0.91342 0.99642 1.20271 0.91866 0.97838 1.03527 1.15824 0.92377 0.86136 1.08451 1.26039 0.92645 0.92812 0.92416 1.81133 1.09393 1.11850 1.10900 1.21321 0.99166 0.90141 0.95246 1.16739 0.87484 0.86083 0.85035 1.41194 1.61741 1.21128 1.01890 1.19382 1.32717 1.00735 0.83764 0.89305 1.24832 1.00431 0.96218 0.98108 1.69403 1.50333 1.11488 1.22964 0.85938 0.77585 0.79193 0.82456 1.20200 1.21585 1.21539 1.18530 0.89586 0.94837 0.86295 1.30983 0.95767 0.93738 0.91446 1.80879 1.11547 1.10537 1.11308 0.90590 0.90026 0.90221 0.86264 0.86749 0.86016 0.92354 0.89364 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.99 10.15 36.01 0.37 -2.63 16 2 C 0.38 7.34 6.74 -30.91 -0.21 7.13 16 3 O -0.42 -9.48 11.02 5.52 0.06 -9.42 16 4 C -0.16 -3.11 5.59 -104.82 -0.59 -3.69 16 5 C -0.08 -1.35 9.32 -39.55 -0.37 -1.72 16 6 C -0.11 -1.76 9.67 -39.57 -0.38 -2.15 16 7 C -0.02 -0.39 5.73 -106.92 -0.61 -1.00 16 8 C 0.27 4.78 15.31 -22.48 -0.34 4.44 16 9 N -0.46 -8.48 18.54 41.84 0.78 -7.70 16 10 C -0.03 -0.65 8.14 -38.94 -0.32 -0.96 16 11 C 0.34 6.79 2.85 -83.62 -0.24 6.56 16 12 N -0.54 -11.07 1.49 -116.01 -0.17 -11.24 16 13 C -0.24 -5.53 8.66 -15.13 -0.13 -5.66 16 14 H 0.09 2.04 7.83 -52.48 -0.41 1.63 16 15 C 0.00 0.04 5.41 -17.44 -0.09 -0.06 16 16 N -0.90 -21.85 9.42 55.50 0.52 -21.33 16 17 Si 0.92 20.36 29.56 -169.99 -5.02 15.34 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.24 3.83 6.14 -6.84 -0.04 3.79 16 22 C 0.20 3.74 12.63 -20.80 -0.26 3.48 16 23 N -0.46 -9.53 17.44 42.11 0.73 -8.79 16 24 H 0.08 0.93 5.71 -51.93 -0.30 0.64 16 25 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.12 1.54 6.04 -52.49 -0.32 1.22 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.09 1.13 8.09 -51.92 -0.42 0.71 16 32 H 0.11 1.48 7.99 -51.92 -0.42 1.07 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -28.82 291.48 -4.62 -33.44 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -2.69 Total: -2.22 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -3.22 Total: 7.52 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 1.86 Total: -49.06 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.82 -4.62 -33.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131233539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.852 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds