Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21326 * 119.99799 * 2 1 4 4 C 1.46670 * 119.99919 * 179.97438 * 2 1 3 5 5 C 1.40061 * 120.10296 * 353.27719 * 4 2 1 6 6 C 1.36430 * 120.20091 * 179.97438 * 5 4 2 7 7 C 1.40009 * 120.40275 * 359.97438 * 6 5 4 8 8 C 1.43194 * 119.90772 * 180.02562 * 7 6 5 9 9 N 6.81197 * 119.71033 * 179.97438 * 2 1 3 10 10 C 1.39275 * 120.18928 * 359.79279 * 7 6 5 11 11 C 1.38921 * 119.80241 * 0.43979 * 10 7 6 12 12 N 1.38455 * 120.19766 * 179.81680 * 11 10 7 13 13 C 1.36659 * 119.99793 * 269.72271 * 12 11 10 14 14 H 1.08004 * 119.99695 * 185.57237 * 13 12 11 15 15 C 1.38966 * 120.00034 * 5.56501 * 13 12 11 16 16 N 1.31461 * 120.00197 * 6.36121 * 15 13 12 17 17 Si 1.86801 * 119.99895 * 186.35462 * 15 13 12 18 18 H 1.48498 * 109.46990 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47120 * 120.00681 * 17 15 13 20 20 H 1.48504 * 109.46915 * 240.00158 * 17 15 13 21 21 C 1.46493 * 119.99954 * 89.72440 * 12 11 10 22 22 C 1.47194 * 109.47654 * 84.88570 * 21 12 11 23 23 N 3.16863 * 108.22533 * 308.38065 * 2 1 3 24 24 H 1.08996 * 109.47207 * 174.53480 * 1 2 3 25 25 H 1.09008 * 109.46954 * 294.53466 * 1 2 3 26 26 H 1.09000 * 109.47468 * 54.53162 * 1 2 3 27 27 H 1.08000 * 119.90096 * 0.02562 * 5 4 2 28 28 H 1.07995 * 119.80474 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.09440 * 180.25299 * 10 7 6 30 30 H 0.97002 * 120.00259 * 179.97438 * 16 15 13 31 31 H 1.09008 * 109.47180 * 324.88160 * 21 12 11 32 32 H 1.09008 * 109.46998 * 204.88666 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2404 -1.2702 0.0006 5 6 1.5494 -2.4802 0.1430 6 6 2.2295 -3.6629 0.1432 7 6 3.6222 -3.6794 0.0009 8 6 4.3253 -4.9269 0.0021 9 7 4.8831 -5.9165 0.0026 10 6 4.3254 -2.4863 -0.1466 11 6 3.6417 -1.2770 -0.1432 12 7 4.3329 -0.0858 -0.2855 13 6 4.7945 0.5725 0.8196 14 1 5.2538 1.5446 0.7164 15 6 4.6727 -0.0087 2.0760 16 7 4.2292 -1.2410 2.1900 17 14 5.1394 0.9611 3.6028 18 1 5.6060 2.3140 3.2065 19 1 3.9556 1.0865 4.4906 20 1 6.2270 0.2536 4.3253 21 6 4.5693 0.4689 -1.6206 22 6 3.3994 1.2585 -2.0382 23 7 2.4980 1.8687 -2.3593 24 1 -0.3633 -1.0230 -0.0979 25 1 -0.3633 0.4268 0.9350 26 1 -0.3634 0.5963 -0.8369 27 1 0.4750 -2.4770 0.2520 28 1 1.6903 -4.5921 0.2530 29 1 5.3993 -2.5011 -0.2604 30 1 4.1446 -1.6468 3.0670 31 1 4.7304 -0.3442 -2.3285 32 1 5.4507 1.1099 -1.5968 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131233539.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = 80.912126 kcal Electronic energy + Delta-G solvation = -20315.821229 eV Core-core repulsion = 17243.250166 eV Total energy + Delta-G solvation = -3072.571063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98733 -38.98173 -38.01500 -37.13609 -36.31137 -33.36920 -32.80277 -30.96395 -30.09444 -28.43450 -25.73334 -25.03119 -22.58812 -20.85879 -20.18668 -18.69253 -17.98158 -17.22247 -16.95314 -16.46278 -15.88893 -15.76289 -15.24442 -15.05123 -14.84574 -14.74962 -14.46401 -14.32418 -13.84421 -13.58908 -13.43506 -13.04071 -13.00558 -12.90080 -12.83963 -12.75988 -12.35205 -12.28686 -12.18400 -11.81699 -11.65259 -11.07871 -10.21527 -9.52416 -9.34601 -9.10889 -7.62262 -5.27586 -0.20097 0.95194 1.46690 1.52784 1.54103 1.58147 1.76510 2.07728 2.23239 2.39812 2.61502 3.05032 3.31627 3.39799 3.52940 3.64803 3.74976 4.21029 4.38076 4.47587 4.68184 4.69448 4.79207 4.85955 4.92126 5.06578 5.20973 5.33923 5.54890 5.67641 5.69898 5.99812 6.08306 6.29049 6.60892 7.00958 7.11244 7.23030 7.77476 8.09525 9.18029 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.010309 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.694182 B = 2715.390181 C = 3581.360402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.365 3.635 3 O -0.458 6.458 4 C -0.183 4.183 5 C -0.076 4.076 6 C -0.105 4.105 7 C -0.018 4.018 8 C 0.289 3.711 9 N -0.476 5.476 10 C -0.045 4.045 11 C 0.321 3.679 12 N -0.554 5.554 13 C -0.233 4.233 14 H 0.083 0.917 15 C -0.036 4.036 16 N -0.907 5.907 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.306 1.306 20 H -0.293 1.293 21 C 0.231 3.769 22 C 0.215 3.785 23 N -0.501 5.501 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.116 0.884 30 H 0.252 0.748 31 H 0.126 0.874 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -3.134 -5.452 7.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.244 3.756 3 O -0.334 6.334 4 C -0.188 4.188 5 C -0.095 4.095 6 C -0.125 4.125 7 C -0.023 4.023 8 C -0.024 4.024 9 N -0.153 5.153 10 C -0.069 4.069 11 C 0.226 3.774 12 N -0.269 5.269 13 C -0.361 4.361 14 H 0.101 0.899 15 C -0.231 4.231 16 N -0.553 5.553 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.234 1.234 20 H -0.220 1.220 21 C 0.102 3.898 22 C -0.104 4.104 23 N -0.182 5.182 24 H 0.126 0.874 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.143 0.857 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.540 -3.231 -5.729 7.992 hybrid contribution 0.324 0.833 1.705 1.925 sum -4.217 -2.399 -4.024 6.303 Atomic orbital electron populations 1.22188 0.92961 1.05732 1.03910 1.22775 0.92339 0.88328 0.72175 1.90577 1.72323 1.35092 1.35398 1.21320 0.95290 0.95110 1.07052 1.20999 1.00550 0.90168 0.97750 1.20649 0.91129 0.99195 1.01552 1.15930 0.93215 0.85361 1.07820 1.26012 0.92117 0.92534 0.91772 1.81156 1.09929 1.12626 1.11549 1.21255 0.98978 0.90478 0.96142 1.16932 0.88110 0.86095 0.86286 1.41248 1.61939 1.21294 1.02435 1.19431 1.31651 1.00303 0.84717 0.89915 1.25177 1.01733 0.96969 0.99248 1.69609 1.51721 1.11870 1.22092 0.85386 0.76399 0.78610 0.81100 1.20184 1.23361 1.22020 1.19032 0.89175 0.96122 0.85474 1.31412 0.95586 0.92973 0.90401 1.80866 1.12723 1.11930 1.12684 0.87378 0.89464 0.90024 0.82709 0.83382 0.86636 0.93656 0.85651 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.27 10.15 71.24 0.72 -4.55 16 2 C 0.37 13.76 6.74 27.89 0.19 13.95 16 3 O -0.46 -20.78 11.02 -3.17 -0.03 -20.82 16 4 C -0.18 -6.56 5.59 -19.99 -0.11 -6.67 16 5 C -0.08 -2.13 9.32 22.29 0.21 -1.93 16 6 C -0.10 -2.84 9.67 22.28 0.22 -2.63 16 7 C -0.02 -0.58 5.73 -21.36 -0.12 -0.70 16 8 C 0.29 9.46 15.31 88.33 1.35 10.81 16 9 N -0.48 -16.84 18.54 19.00 0.35 -16.49 16 10 C -0.04 -1.60 8.14 22.68 0.18 -1.42 16 11 C 0.32 12.32 2.85 38.90 0.11 12.43 16 12 N -0.55 -22.07 1.49 -520.93 -0.78 -22.84 16 13 C -0.23 -10.73 8.66 84.12 0.73 -10.00 16 14 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 15 C -0.04 -1.73 5.41 84.92 0.46 -1.27 16 16 N -0.91 -43.95 9.42 21.67 0.20 -43.75 16 17 Si 0.95 42.22 29.56 68.60 2.03 44.25 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 21 C 0.23 7.13 6.14 84.57 0.52 7.65 16 22 C 0.22 7.87 12.63 89.45 1.13 9.00 16 23 N -0.50 -20.50 17.44 19.99 0.35 -20.15 16 24 H 0.11 2.19 5.71 -2.39 -0.01 2.18 16 25 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.16 3.18 6.04 -2.91 -0.02 3.16 16 28 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.25 12.45 8.31 -92.71 -0.77 11.67 16 31 H 0.13 2.93 8.09 -2.38 -0.02 2.91 16 32 H 0.13 3.36 7.99 -2.38 -0.02 3.34 16 Total: -1.00 -62.36 291.48 8.88 -53.48 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 1.17 Total: 1.63 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 5.58 Total: 24.68 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: 0.13 Total: -103.22 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.03 Total: -20.82 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -62.36 8.88 -53.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131233539.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.392 kcal (2) G-P(sol) polarization free energy of solvation -62.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds