Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50701 * 109.47712 * 120.00528 * 2 1 3 5 5 H 1.07996 * 120.00368 * 119.99795 * 4 2 1 6 6 C 1.37879 * 119.99611 * 300.00032 * 4 2 1 7 7 N 1.31516 * 119.99779 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47119 * 90.00061 * 8 6 4 10 10 H 1.48501 * 109.47058 * 209.99732 * 8 6 4 11 11 H 1.48500 * 109.47083 * 330.00121 * 8 6 4 12 12 N 1.46503 * 109.47227 * 240.00145 * 2 1 3 13 13 C 1.46498 * 120.00048 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99952 * 119.99326 * 12 2 1 15 15 O 1.21280 * 119.99761 * 0.02562 * 14 12 2 16 16 C 1.50703 * 119.99703 * 180.02562 * 14 12 2 17 17 N 1.46504 * 109.46603 * 180.02562 * 16 14 12 18 18 C 1.47308 * 126.69390 * 270.29480 * 17 16 14 19 19 C 1.51579 * 103.59774 * 180.02562 * 18 17 16 20 20 O 1.21233 * 127.16311 * 179.97438 * 19 18 17 21 21 N 1.34773 * 105.68013 * 359.65777 * 19 18 17 22 22 C 1.33795 * 111.64536 * 0.22635 * 21 19 18 23 23 O 1.21531 * 123.76756 * 179.97438 * 22 21 19 24 24 H 1.08993 * 109.46947 * 299.99423 * 1 2 3 25 25 H 1.08996 * 109.47055 * 59.99867 * 1 2 3 26 26 H 1.09010 * 109.46895 * 180.02562 * 1 2 3 27 27 H 0.97010 * 119.99938 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46524 * 269.99421 * 13 12 2 29 29 H 1.08999 * 109.47323 * 29.98971 * 13 12 2 30 30 H 1.09004 * 109.47622 * 149.99742 * 13 12 2 31 31 H 1.09001 * 109.47164 * 60.00785 * 16 14 12 32 32 H 1.08993 * 109.47070 * 300.00472 * 16 14 12 33 33 H 1.08999 * 110.69646 * 61.50423 * 18 17 16 34 34 H 1.09002 * 110.50179 * 298.56348 * 18 17 16 35 35 H 0.97003 * 124.17604 * 180.26125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.6299 -0.5460 4.4122 10 1 1.3434 -0.9494 5.1119 11 1 2.4861 -2.5663 3.7117 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7458 -3.3142 17 7 4.1094 0.1750 -4.1113 18 6 3.6335 1.0743 -5.1765 19 6 4.8945 1.7759 -5.6404 20 8 4.9883 2.6132 -6.5121 21 7 5.8887 1.2803 -4.8774 22 6 5.4365 0.3691 -4.0083 23 8 6.1457 -0.2179 -3.2148 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.7090 1.1612 3.4845 28 1 2.4158 -2.7376 -0.9718 29 1 0.6905 -2.3002 -0.9847 30 1 1.6237 -2.2852 -2.5004 31 1 2.4470 -1.0879 -3.9074 32 1 3.9004 -1.6023 -3.0179 33 1 2.9180 1.7952 -4.7809 34 1 3.1910 0.5008 -5.9910 35 1 6.8174 1.5512 -4.9490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134838306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = -65.096212 kcal Electronic energy + Delta-G solvation = -20928.917138 eV Core-core repulsion = 17542.705759 eV Total energy + Delta-G solvation = -3386.211380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.26853 -39.25187 -38.55244 -36.20727 -35.46739 -34.39994 -32.91321 -30.18572 -28.74858 -26.82980 -26.16917 -25.23115 -22.54704 -22.11850 -20.66485 -18.61055 -18.21719 -17.34436 -16.74130 -16.51426 -16.17713 -15.76267 -15.53751 -14.95068 -14.63089 -14.30970 -14.10766 -14.00462 -13.44678 -12.88433 -12.74673 -12.63084 -11.97449 -11.60350 -11.59026 -11.09294 -11.06579 -10.85417 -10.76597 -10.44487 -10.37176 -10.28086 -10.19531 -9.74757 -9.21227 -8.70416 -8.44277 -7.69073 -6.09822 -4.17765 1.50624 2.09754 2.89694 2.98606 3.19329 3.26939 3.33735 3.35784 3.88283 3.94853 4.38414 4.64597 4.84153 4.97380 5.13135 5.22066 5.23598 5.56962 5.60331 5.90255 5.96687 6.19141 6.22977 6.69885 6.74448 6.94587 6.98754 7.23283 7.33608 7.44914 7.67652 7.96334 8.05880 8.14797 8.42796 8.77275 8.93614 9.48889 10.95521 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.004620 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.195164 B = 6059.035309 C = 6258.469166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.482 3.518 15 O -0.543 6.543 16 C 0.132 3.868 17 N -0.605 5.605 18 C 0.064 3.936 19 C 0.531 3.469 20 O -0.479 6.479 21 N -0.679 5.679 22 C 0.706 3.294 23 O -0.537 6.537 24 H 0.094 0.906 25 H 0.011 0.989 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -4.649 -15.464 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.061 4.061 14 C 0.267 3.733 15 O -0.421 6.421 16 C 0.007 3.993 17 N -0.344 5.344 18 C -0.062 4.062 19 C 0.317 3.683 20 O -0.349 6.349 21 N -0.348 5.348 22 C 0.406 3.594 23 O -0.410 6.410 24 H 0.112 0.888 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.024 -3.914 -15.153 15.781 hybrid contribution 0.663 -0.375 0.987 1.247 sum 2.686 -4.289 -14.166 15.043 Atomic orbital electron populations 1.22091 0.98090 0.99401 1.00889 1.18965 0.90862 0.94515 0.79866 0.91944 1.21309 1.31827 1.13067 0.90244 0.92214 1.24891 0.94890 0.94978 0.99014 1.69877 1.36362 1.22631 1.23800 0.86481 0.78670 0.79890 0.82278 1.20596 1.21128 1.19870 1.48271 1.48652 1.11724 1.23520 1.21627 1.02160 0.83140 0.99208 1.20783 0.79791 0.87740 0.84985 1.90673 1.57748 1.17037 1.76657 1.21327 0.95513 0.91070 0.91376 1.46998 1.06405 1.43081 1.37873 1.22521 0.96810 0.94911 0.91985 1.20803 0.86608 0.80798 0.80063 1.90840 1.84872 1.29800 1.29426 1.44307 1.13686 1.40478 1.36379 1.15758 0.83079 0.79908 0.80616 1.91035 1.59629 1.51788 1.38555 0.88767 0.96982 0.95014 0.92672 0.92883 0.90505 0.92970 0.86880 0.86579 0.85520 0.85865 0.72708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.95 37.16 0.33 -3.00 16 2 C 0.26 6.37 2.64 -69.08 -0.18 6.19 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -14.02 8.37 -34.44 -0.29 -14.31 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.59 -11.67 2.75 -175.26 -0.48 -12.15 16 13 C 0.08 1.21 9.48 59.85 0.57 1.78 16 14 C 0.48 9.16 7.74 -10.98 -0.09 9.07 16 15 O -0.54 -12.75 15.76 5.56 0.09 -12.66 16 16 C 0.13 1.68 5.18 -5.19 -0.03 1.65 16 17 N -0.61 -7.73 2.51 -181.40 -0.45 -8.18 16 18 C 0.06 0.60 7.66 -4.32 -0.03 0.57 16 19 C 0.53 5.89 8.81 -10.55 -0.09 5.79 16 20 O -0.48 -6.38 18.02 5.60 0.10 -6.28 16 21 N -0.68 -7.75 5.70 -15.79 -0.09 -7.84 16 22 C 0.71 10.34 8.68 -88.02 -0.76 9.57 16 23 O -0.54 -9.98 17.71 5.34 0.09 -9.88 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.03 0.66 6.66 -51.92 -0.35 0.31 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.16 6.43 -51.93 -0.33 0.82 16 30 H 0.05 0.52 6.44 -51.93 -0.33 0.19 16 31 H 0.11 0.93 7.40 -51.93 -0.38 0.54 16 32 H 0.12 1.41 7.99 -51.93 -0.42 0.99 16 33 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.43 4.00 8.96 -40.82 -0.37 3.64 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -35.55 302.83 -5.32 -40.87 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.08 Total: 0.89 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: -0.67 Total: 18.97 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.40 Total: -52.47 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: 0.28 Total: -28.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.55 -5.32 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134838306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.225 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds