Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50701 * 109.47712 * 120.00528 * 2 1 3 5 5 H 1.07996 * 120.00368 * 119.99795 * 4 2 1 6 6 C 1.37879 * 119.99611 * 300.00032 * 4 2 1 7 7 N 1.31516 * 119.99779 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47119 * 90.00061 * 8 6 4 10 10 H 1.48501 * 109.47058 * 209.99732 * 8 6 4 11 11 H 1.48500 * 109.47083 * 330.00121 * 8 6 4 12 12 N 1.46503 * 109.47227 * 240.00145 * 2 1 3 13 13 C 1.46498 * 120.00048 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99952 * 119.99326 * 12 2 1 15 15 O 1.21280 * 119.99761 * 0.02562 * 14 12 2 16 16 C 1.50703 * 119.99703 * 180.02562 * 14 12 2 17 17 N 1.46504 * 109.46603 * 180.02562 * 16 14 12 18 18 C 1.47308 * 126.69390 * 270.29480 * 17 16 14 19 19 C 1.51579 * 103.59774 * 180.02562 * 18 17 16 20 20 O 1.21233 * 127.16311 * 179.97438 * 19 18 17 21 21 N 1.34773 * 105.68013 * 359.65777 * 19 18 17 22 22 C 1.33795 * 111.64536 * 0.22635 * 21 19 18 23 23 O 1.21531 * 123.76756 * 179.97438 * 22 21 19 24 24 H 1.08993 * 109.46947 * 299.99423 * 1 2 3 25 25 H 1.08996 * 109.47055 * 59.99867 * 1 2 3 26 26 H 1.09010 * 109.46895 * 180.02562 * 1 2 3 27 27 H 0.97010 * 119.99938 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46524 * 269.99421 * 13 12 2 29 29 H 1.08999 * 109.47323 * 29.98971 * 13 12 2 30 30 H 1.09004 * 109.47622 * 149.99742 * 13 12 2 31 31 H 1.09001 * 109.47164 * 60.00785 * 16 14 12 32 32 H 1.08993 * 109.47070 * 300.00472 * 16 14 12 33 33 H 1.08999 * 110.69646 * 61.50423 * 18 17 16 34 34 H 1.09002 * 110.50179 * 298.56348 * 18 17 16 35 35 H 0.97003 * 124.17604 * 180.26125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.6299 -0.5460 4.4122 10 1 1.3434 -0.9494 5.1119 11 1 2.4861 -2.5663 3.7117 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7458 -3.3142 17 7 4.1094 0.1750 -4.1113 18 6 3.6335 1.0743 -5.1765 19 6 4.8945 1.7759 -5.6404 20 8 4.9883 2.6132 -6.5121 21 7 5.8887 1.2803 -4.8774 22 6 5.4365 0.3691 -4.0083 23 8 6.1457 -0.2179 -3.2148 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.7090 1.1612 3.4845 28 1 2.4158 -2.7376 -0.9718 29 1 0.6905 -2.3002 -0.9847 30 1 1.6237 -2.2852 -2.5004 31 1 2.4470 -1.0879 -3.9074 32 1 3.9004 -1.6023 -3.0179 33 1 2.9180 1.7952 -4.7809 34 1 3.1910 0.5008 -5.9910 35 1 6.8174 1.5512 -4.9490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134838306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = -93.302945 kcal Electronic energy + Delta-G solvation = -20930.140274 eV Core-core repulsion = 17542.705759 eV Total energy + Delta-G solvation = -3387.434515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.26214 -40.68029 -39.66808 -37.41302 -37.04333 -35.48266 -34.76745 -31.79645 -29.93683 -27.89291 -27.50631 -27.23103 -23.77642 -23.22378 -22.07067 -20.03248 -19.25260 -18.61208 -18.32780 -17.74662 -17.48582 -17.04088 -16.86480 -16.47513 -16.02622 -15.61057 -15.28556 -15.07347 -14.73353 -14.37901 -14.08074 -13.92659 -13.44609 -13.16045 -12.95436 -12.91569 -12.67659 -12.57228 -12.17085 -12.14996 -12.09111 -11.49788 -11.43489 -11.18086 -11.04688 -10.53288 -9.92448 -9.30368 -8.14657 -6.30666 0.56004 1.12459 1.40144 1.42420 1.51431 1.77533 1.92111 2.02394 2.37046 2.57200 3.06190 3.13563 3.70187 3.78783 4.23733 4.34569 4.36835 4.54705 4.68506 4.76321 4.85327 4.93293 5.03560 5.08405 5.13602 5.21675 5.48926 5.66120 5.68540 5.93978 6.06401 6.18346 6.32313 6.77989 6.84023 7.01365 7.32647 7.48449 8.89102 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.004620 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.195164 B = 6059.035309 C = 6258.469166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.287 1.287 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.598 5.598 13 C 0.076 3.924 14 C 0.470 3.530 15 O -0.601 6.601 16 C 0.143 3.857 17 N -0.605 5.605 18 C 0.068 3.932 19 C 0.535 3.465 20 O -0.501 6.501 21 N -0.672 5.672 22 C 0.700 3.300 23 O -0.585 6.585 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.051 0.949 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.175 0.825 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.177 0.823 35 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -6.812 -17.240 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.184 1.184 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.258 3.742 15 O -0.483 6.483 16 C 0.019 3.981 17 N -0.341 5.341 18 C -0.056 4.056 19 C 0.324 3.676 20 O -0.373 6.373 21 N -0.342 5.342 22 C 0.401 3.599 23 O -0.462 6.462 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.192 0.808 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.194 0.806 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 1.308 -6.108 -16.980 18.092 hybrid contribution 0.893 0.351 1.506 1.786 sum 2.201 -5.757 -15.474 16.656 Atomic orbital electron populations 1.21844 0.96710 1.00313 1.00026 1.18501 0.91850 0.91999 0.81801 0.97756 1.21613 1.31650 1.12999 0.91366 0.92319 1.25699 0.95131 0.95669 1.01957 1.70021 1.37400 1.23901 1.24318 0.85524 0.77643 0.79378 0.78886 1.21324 1.20442 1.18415 1.48255 1.48839 1.13650 1.22151 1.21950 1.01694 0.79813 1.03126 1.21999 0.78553 0.87323 0.86365 1.90646 1.59580 1.19880 1.78203 1.21486 0.97415 0.89993 0.89203 1.47163 1.05758 1.43213 1.38015 1.22809 0.95577 0.94913 0.92305 1.21051 0.87021 0.80219 0.79354 1.90841 1.85218 1.30812 1.30475 1.44242 1.14445 1.39702 1.35763 1.16010 0.83718 0.79844 0.80353 1.90998 1.60956 1.53655 1.40560 0.91863 0.95562 0.93034 0.92731 0.92941 0.90948 0.87112 0.80781 0.85427 0.85467 0.80622 0.71940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.95 71.98 0.64 -5.31 16 2 C 0.26 13.14 2.64 44.24 0.12 13.26 16 3 H 0.00 0.27 6.90 -2.39 -0.02 0.26 16 4 C -0.54 -29.02 8.37 25.60 0.21 -28.81 16 5 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 6 C 0.01 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 12 N -0.60 -22.95 2.75 -826.78 -2.28 -25.23 16 13 C 0.08 1.97 9.48 127.77 1.21 3.19 16 14 C 0.47 17.28 7.74 87.66 0.68 17.96 16 15 O -0.60 -28.82 15.76 -3.03 -0.05 -28.87 16 16 C 0.14 3.09 5.18 85.63 0.44 3.53 16 17 N -0.60 -13.74 2.51 -846.26 -2.12 -15.86 16 18 C 0.07 1.05 7.66 85.76 0.66 1.71 16 19 C 0.54 10.87 8.81 87.94 0.77 11.64 16 20 O -0.50 -12.62 18.02 -2.88 -0.05 -12.67 16 21 N -0.67 -14.70 5.70 -441.12 -2.52 -17.22 16 22 C 0.70 19.74 8.68 179.44 1.56 21.29 16 23 O -0.59 -21.71 17.71 -3.81 -0.07 -21.77 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 2.09 6.66 -2.38 -0.02 2.08 16 27 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.95 6.43 -2.39 -0.02 1.94 16 30 H 0.11 1.55 6.44 -2.38 -0.02 1.54 16 31 H 0.18 1.64 7.40 -2.39 -0.02 1.62 16 32 H 0.13 2.58 7.99 -2.39 -0.02 2.56 16 33 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.18 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.44 7.99 8.96 -92.71 -0.83 7.15 16 Total: -1.00 -83.13 302.83 2.24 -80.89 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.30 Total: 8.26 kcal Atomic # 6 Polarization: 32.97 SS G_CDS: 6.75 Total: 39.72 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -6.67 Total: -110.92 kcal Atomic # 8 Polarization: -63.15 SS G_CDS: -0.17 Total: -63.31 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -83.13 2.24 -80.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134838306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.411 kcal (2) G-P(sol) polarization free energy of solvation -83.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds