Wall clock time and date at job start Mon Mar 30 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31184 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48497 * 109.46908 * 239.99808 * 3 2 1 5 5 H 1.48497 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46961 * 119.99960 * 3 2 1 7 7 C 1.39568 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.41152 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.41898 * 126.60573 * 0.02654 * 9 7 2 11 11 N 1.30213 * 108.45336 * 179.73572 * 10 9 7 12 12 N 1.39865 * 109.60089 * 0.38953 * 11 10 9 13 13 C 1.38860 * 125.78812 * 179.86950 * 12 11 10 14 14 N 1.30794 * 125.05120 * 179.71648 * 13 12 11 15 15 C 1.35787 * 109.62784 * 179.73613 * 14 13 12 16 16 C 1.39763 * 133.43093 * 180.02562 * 15 14 13 17 17 C 1.37641 * 119.77549 * 180.02562 * 16 15 14 18 18 C 1.38739 * 120.51426 * 0.02562 * 17 16 15 19 19 C 1.37920 * 120.44531 * 359.97438 * 18 17 16 20 20 C 1.38725 * 119.84629 * 0.02562 * 19 18 17 21 21 N 1.36504 * 125.04447 * 359.41209 * 13 12 11 22 22 H 0.96994 * 126.37405 * 0.26389 * 21 13 12 23 23 C 1.36200 * 108.42626 * 359.60377 * 12 11 10 24 24 N 1.37649 * 126.63286 * 180.22427 * 23 12 11 25 25 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 26 26 H 1.08007 * 125.77651 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.10926 * 359.97418 * 16 15 14 28 28 H 1.08006 * 119.74078 * 180.02562 * 17 16 15 29 29 H 1.07992 * 119.77767 * 180.02562 * 18 17 16 30 30 H 1.07997 * 120.07706 * 180.02562 * 19 18 17 31 31 H 0.96997 * 120.00342 * 0.02562 * 24 23 12 32 32 H 0.97008 * 120.00200 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2458 1.6178 0.0000 4 1 3.0995 1.6964 -1.2125 5 1 1.2808 2.7465 -0.0006 6 1 3.0995 1.6965 1.2125 7 6 2.0097 -1.2087 -0.0005 8 1 3.0897 -1.2087 -0.0001 9 6 1.3040 -2.4311 -0.0005 10 6 -0.1055 -2.5945 -0.0006 11 7 -0.3728 -3.8689 -0.0062 12 7 0.8204 -4.5985 -0.0012 13 6 0.9256 -5.9831 -0.0024 14 7 2.0501 -6.6511 -0.0030 15 6 1.7891 -7.9836 0.0017 16 6 2.6005 -9.1216 0.0038 17 6 2.0246 -10.3717 0.0084 18 6 0.6442 -10.5114 0.0104 19 6 -0.1708 -9.3988 0.0083 20 6 0.3919 -8.1308 0.0038 21 7 -0.1294 -6.8493 0.0027 22 1 -1.0696 -6.6108 0.0042 23 6 1.8618 -3.7207 -0.0010 24 7 3.2017 -4.0360 -0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 -0.8336 -1.7967 -0.0002 27 1 3.6758 -9.0204 0.0010 28 1 2.6521 -11.2508 0.0104 29 1 0.2050 -11.4980 0.0143 30 1 -1.2445 -9.5144 0.0103 31 1 3.4815 -4.9647 -0.0017 32 1 3.8663 -3.3293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148966214.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:25 Heat of formation + Delta-G solvation = 154.548348 kcal Electronic energy + Delta-G solvation = -19214.688102 eV Core-core repulsion = 16177.602895 eV Total energy + Delta-G solvation = -3037.085206 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.89038 -39.64279 -37.03872 -33.68537 -33.59495 -32.74124 -31.32098 -29.76663 -28.33574 -27.83238 -24.83084 -22.83979 -22.25308 -21.42011 -20.05235 -19.32965 -17.92019 -17.26342 -16.72409 -16.04665 -15.48715 -15.32837 -14.81561 -14.41499 -14.17190 -13.82607 -13.58608 -13.53472 -12.84816 -11.97273 -11.71587 -11.68117 -11.43124 -11.16746 -11.11144 -10.79289 -10.60038 -10.19480 -9.92005 -9.76128 -9.47411 -9.17034 -8.76469 -8.16118 -7.30621 -6.78680 -6.50071 -3.89968 1.06207 1.61399 2.51664 2.54128 3.11849 3.17935 3.20928 3.42282 3.67510 4.04246 4.10343 4.19809 4.57515 4.95124 5.10458 5.12476 5.38652 5.42143 5.45534 5.54833 5.79851 6.08499 6.25907 6.40277 6.56969 6.60888 6.75284 6.96043 6.99070 7.24915 7.51575 7.75875 7.94768 8.08388 8.43116 8.61922 8.68939 8.99841 9.08590 9.29023 10.52199 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.051212 B = 0.004202 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.616302 B = 6662.012855 C = 7198.778866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.063 3.937 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.421 4.421 8 H 0.068 0.932 9 C -0.074 4.074 10 C 0.105 3.895 11 N -0.369 5.369 12 N -0.340 5.340 13 C 0.575 3.425 14 N -0.540 5.540 15 C 0.083 3.917 16 C -0.081 4.081 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.103 4.103 20 C 0.039 3.961 21 N -0.602 5.602 22 H 0.428 0.572 23 C 0.231 3.769 24 N -0.848 5.848 25 H 0.275 0.725 26 H 0.218 0.782 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.399 0.601 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -13.241 0.027 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.146 4.146 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.457 4.457 8 H 0.086 0.914 9 C -0.089 4.089 10 C -0.081 4.081 11 N -0.191 5.191 12 N -0.128 5.128 13 C 0.221 3.779 14 N -0.271 5.271 15 C -0.037 4.037 16 C -0.101 4.101 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.070 4.070 21 N -0.218 5.218 22 H 0.268 0.732 23 C 0.015 3.985 24 N -0.399 5.399 25 H 0.086 0.914 26 H 0.234 0.766 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.230 0.770 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.548 -13.558 0.020 13.569 hybrid contribution 0.051 1.162 0.001 1.163 sum 0.600 -12.396 0.021 12.411 Atomic orbital electron populations 1.69354 1.06975 1.28141 1.44229 1.25514 0.94850 1.00409 0.93840 0.86197 0.79470 0.80616 0.79225 1.19633 1.20750 1.19628 1.18341 0.93393 0.88561 1.45387 0.91360 1.17441 0.91438 0.89270 1.10727 1.25333 0.98164 0.91528 0.93068 1.76920 1.00261 1.06838 1.35079 1.44188 1.06621 0.98073 1.63927 1.18899 0.82817 0.82105 0.94110 1.70336 1.22398 1.02696 1.31653 1.18882 0.90754 0.90842 1.03215 1.20159 0.99156 0.89309 1.01507 1.20790 0.94821 0.96457 1.02456 1.20723 0.93423 0.97376 1.02736 1.19869 0.99567 0.88642 1.04313 1.18693 0.94568 0.85476 1.08245 1.42653 1.09727 1.03917 1.65462 0.73214 1.18166 0.81128 0.87749 1.11503 1.40932 1.01497 1.10253 1.87265 0.91410 0.76647 0.85511 0.85684 0.85676 0.86244 0.76986 0.76631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.45 10.31 55.53 0.57 -20.88 16 2 C 0.06 1.55 5.49 -17.33 -0.10 1.46 16 3 Si 0.92 19.01 29.56 -169.99 -5.02 13.99 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.42 -10.89 9.24 -37.98 -0.35 -11.24 16 8 H 0.07 1.67 7.36 -52.49 -0.39 1.28 16 9 C -0.07 -1.93 5.96 -106.54 -0.63 -2.57 16 10 C 0.11 2.68 10.89 -16.84 -0.18 2.49 16 11 N -0.37 -8.87 12.38 30.96 0.38 -8.49 16 12 N -0.34 -8.01 3.77 -11.75 -0.04 -8.05 16 13 C 0.58 12.11 8.74 -318.92 -2.79 9.32 16 14 N -0.54 -10.84 9.14 -11.33 -0.10 -10.94 16 15 C 0.08 1.44 7.22 -84.70 -0.61 0.83 16 16 C -0.08 -1.12 10.10 -39.23 -0.40 -1.52 16 17 C -0.12 -1.40 10.01 -39.61 -0.40 -1.79 16 18 C -0.12 -1.33 10.03 -39.51 -0.40 -1.73 16 19 C -0.10 -1.30 10.06 -39.52 -0.40 -1.70 16 20 C 0.04 0.64 7.30 -83.89 -0.61 0.03 16 21 N -0.60 -10.60 6.27 -11.01 -0.07 -10.67 16 22 H 0.43 6.71 8.96 -40.82 -0.37 6.35 16 23 C 0.23 5.61 8.04 -152.44 -1.23 4.38 16 24 N -0.85 -17.57 9.01 31.82 0.29 -17.28 16 25 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 26 H 0.22 5.48 5.74 -52.48 -0.30 5.18 16 27 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.40 7.86 6.78 -40.82 -0.28 7.58 16 32 H 0.40 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -28.64 282.53 -10.33 -38.96 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -2.50 Total: 21.14 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -8.09 Total: -2.04 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: 1.03 Total: -76.31 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.64 -10.33 -38.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148966214.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.512 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds