Wall clock time and date at job start Mon Mar 30 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31184 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48497 * 109.46908 * 239.99808 * 3 2 1 5 5 H 1.48497 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46961 * 119.99960 * 3 2 1 7 7 C 1.39568 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.41152 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.41898 * 126.60573 * 0.02654 * 9 7 2 11 11 N 1.30213 * 108.45336 * 179.73572 * 10 9 7 12 12 N 1.39865 * 109.60089 * 0.38953 * 11 10 9 13 13 C 1.38860 * 125.78812 * 179.86950 * 12 11 10 14 14 N 1.30794 * 125.05120 * 179.71648 * 13 12 11 15 15 C 1.35787 * 109.62784 * 179.73613 * 14 13 12 16 16 C 1.39763 * 133.43093 * 180.02562 * 15 14 13 17 17 C 1.37641 * 119.77549 * 180.02562 * 16 15 14 18 18 C 1.38739 * 120.51426 * 0.02562 * 17 16 15 19 19 C 1.37920 * 120.44531 * 359.97438 * 18 17 16 20 20 C 1.38725 * 119.84629 * 0.02562 * 19 18 17 21 21 N 1.36504 * 125.04447 * 359.41209 * 13 12 11 22 22 H 0.96994 * 126.37405 * 0.26389 * 21 13 12 23 23 C 1.36200 * 108.42626 * 359.60377 * 12 11 10 24 24 N 1.37649 * 126.63286 * 180.22427 * 23 12 11 25 25 H 0.96997 * 120.00121 * 0.02562 * 1 2 3 26 26 H 1.08007 * 125.77651 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.10926 * 359.97418 * 16 15 14 28 28 H 1.08006 * 119.74078 * 180.02562 * 17 16 15 29 29 H 1.07992 * 119.77767 * 180.02562 * 18 17 16 30 30 H 1.07997 * 120.07706 * 180.02562 * 19 18 17 31 31 H 0.96997 * 120.00342 * 0.02562 * 24 23 12 32 32 H 0.97008 * 120.00200 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2458 1.6178 0.0000 4 1 3.0995 1.6964 -1.2125 5 1 1.2808 2.7465 -0.0006 6 1 3.0995 1.6965 1.2125 7 6 2.0097 -1.2087 -0.0005 8 1 3.0897 -1.2087 -0.0001 9 6 1.3040 -2.4311 -0.0005 10 6 -0.1055 -2.5945 -0.0006 11 7 -0.3728 -3.8689 -0.0062 12 7 0.8204 -4.5985 -0.0012 13 6 0.9256 -5.9831 -0.0024 14 7 2.0501 -6.6511 -0.0030 15 6 1.7891 -7.9836 0.0017 16 6 2.6005 -9.1216 0.0038 17 6 2.0246 -10.3717 0.0084 18 6 0.6442 -10.5114 0.0104 19 6 -0.1708 -9.3988 0.0083 20 6 0.3919 -8.1308 0.0038 21 7 -0.1294 -6.8493 0.0027 22 1 -1.0696 -6.6108 0.0042 23 6 1.8618 -3.7207 -0.0010 24 7 3.2017 -4.0360 -0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 -0.8336 -1.7967 -0.0002 27 1 3.6758 -9.0204 0.0010 28 1 2.6521 -11.2508 0.0104 29 1 0.2050 -11.4980 0.0143 30 1 -1.2445 -9.5144 0.0103 31 1 3.4815 -4.9647 -0.0017 32 1 3.8663 -3.3293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148966214.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:24 Heat of formation + Delta-G solvation = 139.128274 kcal Electronic energy + Delta-G solvation = -19215.356766 eV Core-core repulsion = 16177.602895 eV Total energy + Delta-G solvation = -3037.753871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.23379 -41.39297 -38.16434 -35.48152 -35.31921 -34.11975 -32.97339 -30.87227 -29.98081 -29.33043 -26.63448 -24.31321 -23.44324 -22.74747 -21.76486 -20.96699 -19.55641 -18.65382 -18.03208 -17.64673 -17.11960 -16.98740 -16.36967 -15.82839 -15.33589 -15.21329 -15.11364 -14.81231 -14.59815 -13.58151 -12.95229 -12.88514 -12.83056 -12.72320 -12.68445 -12.47967 -11.93125 -11.87287 -11.70499 -11.19998 -11.14346 -11.02321 -10.33777 -9.27654 -8.80758 -8.58420 -8.32106 -5.80907 -0.16853 0.53909 0.97300 1.02110 1.49150 1.50220 1.60300 2.00808 2.07225 2.32336 2.38696 2.91177 3.23880 3.45082 3.54207 3.90874 4.13574 4.20648 4.41669 4.48842 4.53358 4.76830 4.94202 5.08088 5.13048 5.33129 5.52290 5.59448 5.66650 5.79500 5.88448 6.00479 6.37062 6.51996 6.61280 6.85997 6.92853 7.17964 7.21469 7.52499 8.71286 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.051212 B = 0.004202 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.616302 B = 6662.012855 C = 7198.778866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.019 3.981 3 Si 0.988 3.012 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.452 4.452 8 H 0.072 0.928 9 C -0.112 4.112 10 C 0.079 3.921 11 N -0.369 5.369 12 N -0.346 5.346 13 C 0.532 3.468 14 N -0.545 5.545 15 C 0.036 3.964 16 C -0.089 4.089 17 C -0.112 4.112 18 C -0.100 4.100 19 C -0.110 4.110 20 C 0.028 3.972 21 N -0.592 5.592 22 H 0.433 0.567 23 C 0.238 3.762 24 N -0.833 5.833 25 H 0.279 0.721 26 H 0.210 0.790 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.146 0.854 31 H 0.405 0.595 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -16.417 0.035 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.090 0.910 9 C -0.127 4.127 10 C -0.106 4.106 11 N -0.193 5.193 12 N -0.135 5.135 13 C 0.177 3.823 14 N -0.276 5.276 15 C -0.082 4.082 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.131 4.131 20 C -0.080 4.080 21 N -0.209 5.209 22 H 0.274 0.726 23 C 0.019 3.981 24 N -0.386 5.386 25 H 0.089 0.911 26 H 0.226 0.774 27 H 0.156 0.844 28 H 0.184 0.816 29 H 0.187 0.813 30 H 0.164 0.836 31 H 0.237 0.763 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.247 -16.804 0.029 16.850 hybrid contribution -0.109 1.630 -0.001 1.634 sum 1.138 -15.174 0.028 15.217 Atomic orbital electron populations 1.69448 1.08101 1.28979 1.44630 1.26329 0.95698 1.03364 0.93276 0.85142 0.78129 0.76444 0.79157 1.19275 1.20175 1.19262 1.18601 0.93732 0.89340 1.47097 0.90992 1.17757 0.92019 0.90240 1.12659 1.25180 0.98121 0.91919 0.95355 1.76772 1.00906 1.06364 1.35228 1.44181 1.05951 0.99266 1.64082 1.18916 0.84347 0.81377 0.97646 1.70179 1.22665 1.04465 1.30250 1.19392 0.92303 0.90440 1.06085 1.20531 0.99770 0.89323 1.01301 1.21331 0.95679 0.96532 0.99621 1.21353 0.93215 0.98628 0.98716 1.20342 1.01449 0.87454 1.03889 1.19176 0.94321 0.85880 1.08638 1.42612 1.09406 1.04188 1.64655 0.72631 1.18430 0.82344 0.87890 1.09478 1.40908 1.00471 1.10950 1.86287 0.91079 0.77403 0.84421 0.81609 0.81282 0.83629 0.76275 0.75666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.79 10.31 21.78 0.22 -45.56 16 2 C 0.02 0.98 5.49 85.11 0.47 1.44 16 3 Si 0.99 39.63 29.56 68.60 2.03 41.66 16 4 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.45 -24.22 9.24 23.31 0.22 -24.01 16 8 H 0.07 3.62 7.36 -2.91 -0.02 3.60 16 9 C -0.11 -6.10 5.96 -21.10 -0.13 -6.23 16 10 C 0.08 4.26 10.89 85.84 0.93 5.19 16 11 N -0.37 -18.62 12.38 -55.98 -0.69 -19.31 16 12 N -0.35 -16.90 3.77 -191.10 -0.72 -17.62 16 13 C 0.53 22.89 8.74 260.13 2.27 25.17 16 14 N -0.55 -22.05 9.14 -189.76 -1.73 -23.78 16 15 C 0.04 1.21 7.22 39.45 0.28 1.50 16 16 C -0.09 -2.23 10.10 22.50 0.23 -2.00 16 17 C -0.11 -1.92 10.01 22.25 0.22 -1.70 16 18 C -0.10 -1.60 10.03 22.31 0.22 -1.38 16 19 C -0.11 -2.38 10.06 22.31 0.22 -2.15 16 20 C 0.03 0.87 7.30 38.78 0.28 1.16 16 21 N -0.59 -20.98 6.27 -188.75 -1.18 -22.16 16 22 H 0.43 13.78 8.96 -92.71 -0.83 12.95 16 23 C 0.24 11.98 8.04 132.68 1.07 13.04 16 24 N -0.83 -35.25 9.01 -53.24 -0.48 -35.72 16 25 H 0.28 13.44 8.30 -92.71 -0.77 12.67 16 26 H 0.21 11.31 5.74 -2.91 -0.02 11.30 16 27 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.40 16.15 6.78 -92.71 -0.63 15.52 16 32 H 0.41 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -65.46 282.53 2.73 -62.73 By element: Atomic # 1 Polarization: 50.75 SS G_CDS: -1.01 Total: 49.74 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.30 Total: 10.04 kcal Atomic # 7 Polarization: -159.58 SS G_CDS: -4.59 Total: -164.16 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -65.46 2.73 -62.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148966214.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.856 kcal (2) G-P(sol) polarization free energy of solvation -65.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds