Wall clock time and date at job start Mon Mar 30 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 H 1.09001 * 110.53176 * 57.83351 * 17 16 14 19 19 N 1.47312 * 110.60275 * 295.00496 * 17 16 14 20 20 C 1.34533 * 106.61572 * 241.47314 * 19 17 16 21 21 O 1.21539 * 123.77057 * 179.97438 * 20 19 17 22 22 N 1.33787 * 112.45786 * 359.97438 * 20 19 17 23 23 C 1.34774 * 111.64761 * 0.02562 * 22 20 19 24 24 O 1.21232 * 127.15585 * 180.02562 * 23 22 20 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 30 30 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 31 31 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 32 32 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 33 33 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 34 34 H 0.96997 * 126.68987 * 61.49662 * 19 17 16 35 35 H 0.97008 * 124.17845 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 1 3.5676 1.0984 4.4204 19 7 5.3626 0.6006 3.4113 20 6 6.4064 0.1743 4.1451 21 8 7.5678 0.3308 3.8226 22 7 6.0233 -0.4413 5.2694 23 6 4.6809 -0.4792 5.3828 24 8 4.0358 -0.9670 6.2860 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9028 -0.5285 -4.4375 29 1 2.4157 -2.7377 0.9718 30 1 1.6237 -2.2852 2.5003 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0879 3.9074 33 1 3.9003 -1.6024 3.0180 34 1 5.4033 1.0703 2.5636 35 1 6.6361 -0.8143 5.9225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155556969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:19 Heat of formation + Delta-G solvation = -71.475319 kcal Electronic energy + Delta-G solvation = -20975.157420 eV Core-core repulsion = 17588.669422 eV Total energy + Delta-G solvation = -3386.487999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.50060 -39.45884 -38.76264 -36.42996 -35.69098 -34.09694 -32.95084 -31.31948 -29.97920 -26.46302 -25.81820 -25.14820 -22.87886 -22.01270 -21.00808 -18.74082 -18.36582 -17.25614 -17.00587 -16.71540 -16.43550 -15.87546 -15.75139 -15.42648 -15.13496 -14.40806 -14.27718 -14.03010 -13.32509 -13.07798 -12.87304 -12.57310 -12.32422 -11.97451 -11.89191 -11.73524 -11.23107 -11.18212 -10.78184 -10.58166 -10.47325 -10.22854 -9.75151 -9.57164 -9.47600 -9.27114 -8.71757 -7.92103 -6.22360 -4.24143 1.36214 2.29716 2.86580 2.98204 2.99508 3.17183 3.31325 3.32103 3.53672 3.88843 4.27477 4.39264 4.70617 4.86355 5.10695 5.19315 5.31246 5.46922 5.55746 5.80614 5.85945 6.09064 6.15153 6.22568 6.37222 6.71387 6.73755 6.82952 6.96760 7.15393 7.19126 7.51436 7.98931 8.05420 8.34808 8.61609 8.78849 9.37726 10.90237 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.004918 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.504638 B = 5692.475277 C = 6069.830418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.581 5.581 13 C 0.082 3.918 14 C 0.511 3.489 15 O -0.555 6.555 16 C -0.143 4.143 17 C 0.110 3.890 18 H 0.137 0.863 19 N -0.705 5.705 20 C 0.700 3.300 21 O -0.548 6.548 22 N -0.680 5.680 23 C 0.531 3.469 24 O -0.469 6.469 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.267 0.733 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.451 0.549 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -0.937 16.063 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.127 3.873 3 H 0.082 0.918 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.221 1.221 12 N -0.311 5.311 13 C -0.062 4.062 14 C 0.297 3.703 15 O -0.435 6.435 16 C -0.184 4.184 17 C 0.000 4.000 18 H 0.155 0.845 19 N -0.372 5.372 20 C 0.399 3.601 21 O -0.422 6.422 22 N -0.351 5.351 23 C 0.316 3.684 24 O -0.338 6.338 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.298 0.702 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.002 -0.497 15.980 16.019 hybrid contribution -0.398 0.547 -0.414 0.793 sum 0.604 0.049 15.566 15.577 Atomic orbital electron populations 1.22467 0.98988 1.01157 0.99406 1.19342 0.90057 0.95206 0.82659 0.91782 1.21123 1.32982 1.14356 0.88433 0.90359 1.24873 0.95618 0.96578 0.95622 1.69871 1.44967 1.40118 0.98036 0.86911 0.80417 0.83756 0.77557 1.20387 1.18821 1.22092 1.47872 1.48571 1.11955 1.22667 1.21682 1.02288 0.82502 0.99688 1.20032 0.79186 0.86955 0.84108 1.90646 1.58787 1.16969 1.77077 1.21935 1.01103 0.99004 0.96387 1.21783 0.88825 0.99832 0.89566 0.84540 1.45730 1.04089 1.61373 1.25963 1.15943 0.85601 0.78398 0.80200 1.91055 1.16913 1.61191 1.72993 1.44321 1.10216 1.56352 1.24232 1.20808 0.82288 0.77939 0.87322 1.90841 1.63411 1.43429 1.36162 0.93048 0.92471 0.94721 0.92337 0.92492 0.92451 0.90475 0.86566 0.87923 0.70174 0.72670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.65 37.16 0.32 -2.91 16 2 C 0.23 5.09 2.23 -69.08 -0.15 4.93 16 3 H 0.06 1.58 5.96 -51.93 -0.31 1.27 16 4 C -0.53 -13.92 8.95 -34.44 -0.31 -14.23 16 5 H 0.08 2.22 7.89 -52.49 -0.41 1.81 16 6 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 8 Si 0.88 20.99 24.37 -169.99 -4.14 16.85 16 9 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 10 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 N -0.58 -10.44 2.75 -175.25 -0.48 -10.92 16 13 C 0.08 1.16 9.48 59.85 0.57 1.73 16 14 C 0.51 8.31 7.56 -10.99 -0.08 8.23 16 15 O -0.55 -10.59 14.18 5.55 0.08 -10.51 16 16 C -0.14 -1.58 4.03 -27.89 -0.11 -1.70 16 17 C 0.11 1.15 3.18 -68.21 -0.22 0.93 16 18 H 0.14 1.33 8.07 -51.93 -0.42 0.91 16 19 N -0.71 -8.47 5.85 -59.19 -0.35 -8.82 16 20 C 0.70 8.68 8.99 -88.02 -0.79 7.89 16 21 O -0.55 -8.78 18.04 5.33 0.10 -8.68 16 22 N -0.68 -6.42 5.70 -15.79 -0.09 -6.51 16 23 C 0.53 5.33 8.14 -10.55 -0.09 5.25 16 24 O -0.47 -5.62 18.02 5.60 0.10 -5.52 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.06 1.06 6.66 -51.93 -0.35 0.71 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 31 H 0.08 1.11 6.43 -51.93 -0.33 0.77 16 32 H 0.12 1.03 7.40 -51.93 -0.38 0.64 16 33 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 34 H 0.45 5.98 8.01 -40.82 -0.33 5.66 16 35 H 0.43 3.08 8.96 -40.82 -0.37 2.71 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -32.97 291.85 -4.43 -37.39 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.85 Total: 5.56 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -0.96 Total: 12.12 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.14 Total: -51.61 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.28 Total: -24.71 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.14 Total: 16.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.97 -4.43 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155556969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.085 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds