Wall clock time and date at job start Mon Mar 30 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 H 1.09001 * 110.53176 * 57.83351 * 17 16 14 19 19 N 1.47312 * 110.60275 * 295.00496 * 17 16 14 20 20 C 1.34533 * 106.61572 * 241.47314 * 19 17 16 21 21 O 1.21539 * 123.77057 * 179.97438 * 20 19 17 22 22 N 1.33787 * 112.45786 * 359.97438 * 20 19 17 23 23 C 1.34774 * 111.64761 * 0.02562 * 22 20 19 24 24 O 1.21232 * 127.15585 * 180.02562 * 23 22 20 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 30 30 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 31 31 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 32 32 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 33 33 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 34 34 H 0.96997 * 126.68987 * 61.49662 * 19 17 16 35 35 H 0.97008 * 124.17845 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 1 3.5676 1.0984 4.4204 19 7 5.3626 0.6006 3.4113 20 6 6.4064 0.1743 4.1451 21 8 7.5678 0.3308 3.8226 22 7 6.0233 -0.4413 5.2694 23 6 4.6809 -0.4792 5.3828 24 8 4.0358 -0.9670 6.2860 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9028 -0.5285 -4.4375 29 1 2.4157 -2.7377 0.9718 30 1 1.6237 -2.2852 2.5003 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0879 3.9074 33 1 3.9003 -1.6024 3.0180 34 1 5.4033 1.0703 2.5636 35 1 6.6361 -0.8143 5.9225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155556969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:19 Heat of formation + Delta-G solvation = -99.774745 kcal Electronic energy + Delta-G solvation = -20976.384575 eV Core-core repulsion = 17588.669422 eV Total energy + Delta-G solvation = -3387.715154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.42811 -40.78329 -39.72540 -37.59977 -37.05565 -35.05634 -34.74737 -32.78918 -31.27094 -27.68395 -27.15556 -26.75345 -23.84271 -23.23334 -22.21523 -20.03010 -19.37262 -18.91140 -18.13522 -17.85586 -17.67371 -17.20091 -16.84910 -16.60312 -16.39574 -15.77737 -15.35857 -15.19381 -14.80758 -14.59805 -14.15951 -13.93636 -13.80354 -13.49049 -13.11939 -13.01888 -12.76555 -12.52605 -12.21689 -12.02816 -11.56778 -11.50705 -11.45369 -11.31255 -10.78804 -10.67583 -10.53843 -9.38443 -8.33711 -6.38324 0.48074 1.28285 1.37728 1.40907 1.45583 1.72013 1.91967 2.04640 2.28792 2.34242 2.94008 3.02476 3.46502 3.74821 3.89118 4.31626 4.42871 4.48396 4.50821 4.63012 4.64906 4.67497 4.81574 5.01410 5.06632 5.14009 5.35674 5.50746 5.70533 5.74479 5.89053 6.20010 6.33351 6.64974 6.74710 7.08281 7.21564 7.35702 8.82379 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.004918 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.504638 B = 5692.475277 C = 6069.830418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.231 3.769 3 H 0.038 0.962 4 C -0.525 4.525 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.942 3.058 9 H -0.257 1.257 10 H -0.257 1.257 11 H -0.300 1.300 12 N -0.593 5.593 13 C 0.078 3.922 14 C 0.505 3.495 15 O -0.587 6.587 16 C -0.130 4.130 17 C 0.110 3.890 18 H 0.149 0.851 19 N -0.708 5.708 20 C 0.704 3.296 21 O -0.587 6.587 22 N -0.664 5.664 23 C 0.548 3.452 24 O -0.479 6.479 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.267 0.733 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.445 0.555 35 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -1.024 18.469 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.127 3.873 3 H 0.056 0.944 4 C -0.563 4.563 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.770 3.230 9 H -0.182 1.182 10 H -0.181 1.181 11 H -0.228 1.228 12 N -0.323 5.323 13 C -0.064 4.064 14 C 0.294 3.706 15 O -0.469 6.469 16 C -0.171 4.171 17 C 0.001 3.999 18 H 0.167 0.833 19 N -0.372 5.372 20 C 0.403 3.597 21 O -0.464 6.464 22 N -0.336 5.336 23 C 0.334 3.666 24 O -0.350 6.350 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.134 0.866 34 H 0.290 0.710 35 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -0.427 -0.621 18.453 18.468 hybrid contribution 0.112 0.529 -1.117 1.240 sum -0.315 -0.093 17.336 17.339 Atomic orbital electron populations 1.22324 0.96712 1.02265 1.00029 1.18967 0.91741 0.93640 0.82906 0.94400 1.21395 1.31560 1.13032 0.90334 0.93848 1.25674 0.97200 0.99511 0.95406 1.70014 1.47256 1.42254 0.98635 0.85960 0.79715 0.80205 0.77145 1.18204 1.18113 1.22834 1.47901 1.49291 1.13391 1.21710 1.21898 1.01598 0.80079 1.02832 1.20868 0.77996 0.86733 0.85003 1.90634 1.59552 1.18707 1.78005 1.21913 1.02408 0.98615 0.94141 1.21900 0.88235 1.00360 0.89419 0.83337 1.45797 1.04752 1.60964 1.25731 1.15965 0.84989 0.78125 0.80600 1.91033 1.18558 1.62772 1.74013 1.44099 1.10380 1.55598 1.23500 1.20488 0.82032 0.77298 0.86753 1.90861 1.63515 1.44005 1.36572 0.94285 0.91203 0.92071 0.92392 0.93625 0.87513 0.90800 0.83080 0.86636 0.70975 0.71221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 8.65 71.98 0.62 -5.21 16 2 C 0.23 10.09 2.23 44.24 0.10 10.18 16 3 H 0.04 1.87 5.96 -2.38 -0.01 1.85 16 4 C -0.52 -27.98 8.95 25.60 0.23 -27.75 16 5 H 0.04 2.55 7.89 -2.91 -0.02 2.53 16 6 C 0.02 1.15 5.45 84.66 0.46 1.61 16 7 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 8 Si 0.94 43.43 24.37 68.60 1.67 45.10 16 9 H -0.26 -10.89 6.87 99.48 0.68 -10.21 16 10 H -0.26 -11.43 6.53 99.48 0.65 -10.78 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 N -0.59 -20.30 2.75 -826.77 -2.28 -22.58 16 13 C 0.08 2.01 9.48 127.77 1.21 3.22 16 14 C 0.51 15.41 7.56 87.66 0.66 16.07 16 15 O -0.59 -21.83 14.18 -3.05 -0.04 -21.88 16 16 C -0.13 -2.42 4.03 29.85 0.12 -2.30 16 17 C 0.11 1.99 3.18 44.37 0.14 2.14 16 18 H 0.15 2.44 8.07 -2.39 -0.02 2.42 16 19 N -0.71 -16.08 5.85 -459.61 -2.69 -18.76 16 20 C 0.70 16.56 8.99 179.44 1.61 18.18 16 21 O -0.59 -18.60 18.04 -3.84 -0.07 -18.67 16 22 N -0.66 -11.00 5.70 -441.12 -2.52 -13.51 16 23 C 0.55 9.26 8.14 87.94 0.72 9.98 16 24 O -0.48 -9.75 18.02 -2.88 -0.05 -9.80 16 25 H 0.04 1.55 3.27 -2.39 -0.01 1.55 16 26 H 0.07 2.41 6.66 -2.39 -0.02 2.40 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.11 1.66 6.44 -2.39 -0.02 1.65 16 31 H 0.07 1.95 6.43 -2.38 -0.02 1.93 16 32 H 0.15 1.84 7.40 -2.39 -0.02 1.82 16 33 H 0.12 1.95 8.11 -2.39 -0.02 1.93 16 34 H 0.44 11.64 8.01 -92.71 -0.74 10.90 16 35 H 0.44 5.30 8.96 -92.70 -0.83 4.47 16 Total: -1.00 -73.44 291.85 -0.29 -73.73 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.49 Total: 16.68 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 5.88 Total: 26.12 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -7.18 Total: -111.28 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.16 Total: -50.35 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.67 Total: 45.10 kcal Total: -73.44 -0.29 -73.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155556969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.050 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds