Wall clock time and date at job start Mon Mar 30 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46994 * 2 1 4 4 C 1.52999 * 109.47167 * 239.99909 * 2 1 3 5 5 O 1.42902 * 109.46860 * 65.00196 * 4 2 1 6 6 C 1.53002 * 109.47003 * 120.00063 * 2 1 3 7 7 N 1.46500 * 109.47156 * 294.99581 * 6 2 1 8 8 C 1.39926 * 120.00100 * 179.97438 * 7 6 2 9 9 C 1.38712 * 120.07682 * 359.73030 * 8 7 6 10 10 C 1.38213 * 120.01418 * 179.74442 * 9 8 7 11 11 C 1.38535 * 120.17605 * 0.55172 * 10 9 8 12 12 F 1.35103 * 119.91990 * 179.71992 * 11 10 9 13 13 C 1.38351 * 120.15928 * 359.70559 * 11 10 9 14 14 C 1.38726 * 119.98198 * 0.02562 * 13 11 10 15 15 O 1.35790 * 120.08974 * 179.97438 * 14 13 11 16 16 C 1.34803 * 117.00061 * 354.40415 * 15 14 13 17 17 H 1.08000 * 119.99607 * 5.06276 * 16 15 14 18 18 C 1.38630 * 120.00203 * 185.05743 * 16 15 14 19 19 N 1.31571 * 119.99979 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99805 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47433 * 89.99877 * 20 18 16 22 22 H 1.48503 * 109.47008 * 209.99776 * 20 18 16 23 23 H 1.48504 * 109.47240 * 329.99432 * 20 18 16 24 24 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47303 * 59.99979 * 1 2 3 26 26 H 1.09004 * 109.47064 * 300.00268 * 1 2 3 27 27 H 1.09001 * 109.47413 * 185.00045 * 4 2 1 28 28 H 1.08998 * 109.46996 * 305.00190 * 4 2 1 29 29 H 0.96708 * 113.99582 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47026 * 55.00038 * 6 2 1 31 31 H 1.08998 * 109.46811 * 175.00189 * 6 2 1 32 32 H 0.97002 * 119.99609 * 0.02562 * 7 6 2 33 33 H 1.07995 * 119.99375 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.91447 * 180.27330 * 10 9 8 35 35 H 1.07998 * 120.01323 * 180.02562 * 13 11 10 36 36 H 0.97004 * 119.99994 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0168 -2.4130 6 6 2.0400 -0.7213 1.2493 7 7 1.6525 0.0354 2.4424 8 6 2.0087 -0.4307 3.7127 9 6 2.7238 -1.6120 3.8445 10 6 3.0796 -2.0684 5.0996 11 6 2.7140 -1.3551 6.2295 12 9 3.0595 -1.8090 7.4542 13 6 1.9960 -0.1788 6.1068 14 6 1.6403 0.2883 4.8499 15 8 0.9352 1.4423 4.7270 16 6 0.5119 2.0252 5.8663 17 1 0.8064 1.6187 6.8226 18 6 -0.3013 3.1465 5.8107 19 7 -0.7148 3.7152 6.9227 20 14 -0.8112 3.8493 4.1567 21 1 -2.0796 3.2135 3.7185 22 1 -1.0098 5.3156 4.2819 23 1 0.2508 3.5775 3.1548 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 3.1263 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2951 29 1 1.9526 -0.3833 -3.2441 30 1 1.6053 -1.7198 1.2951 31 1 3.1263 -0.7994 1.2056 32 1 1.1483 0.8591 2.3517 33 1 3.0060 -2.1731 2.9660 34 1 3.6402 -2.9860 5.2001 35 1 1.7125 0.3756 6.9892 36 1 -1.2836 4.5000 6.8838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158246449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:29 Heat of formation + Delta-G solvation = -102.435176 kcal Electronic energy + Delta-G solvation = -20373.198459 eV Core-core repulsion = 16965.447979 eV Total energy + Delta-G solvation = -3407.750480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.10049 -39.44054 -38.01248 -36.74195 -35.46686 -32.75644 -32.36415 -29.48877 -28.15688 -26.77824 -25.32099 -24.83908 -21.82800 -21.20632 -20.23168 -18.14115 -17.84151 -17.57677 -16.36388 -15.92514 -15.59415 -15.32292 -14.91717 -14.50120 -14.27313 -14.02833 -13.90637 -13.70200 -13.48639 -13.05013 -12.75225 -12.61882 -12.31696 -12.11534 -11.69681 -11.59629 -11.18086 -11.05521 -10.84330 -10.78548 -10.54650 -10.36712 -10.20831 -9.56765 -9.36365 -8.91049 -7.87041 -6.60711 -6.44349 -4.08993 2.01384 2.11019 3.17298 3.21247 3.32226 3.61122 4.18127 4.23700 4.35875 4.65271 4.69630 4.82595 4.96550 5.04368 5.13575 5.25814 5.34989 5.44221 5.50178 5.63801 5.73553 5.81085 5.93249 6.01662 6.12287 6.25831 6.27548 6.47771 6.72219 6.94070 6.98849 7.36716 7.47613 7.60104 7.86736 8.00501 8.20450 8.89982 9.48981 10.63391 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.007151 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.256219 B = 3914.364316 C = 6140.781304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.084 0.916 4 C 0.085 3.915 5 O -0.572 6.572 6 C 0.139 3.861 7 N -0.746 5.746 8 C 0.152 3.848 9 C -0.144 4.144 10 C -0.189 4.189 11 C 0.087 3.913 12 F -0.155 7.155 13 C -0.226 4.226 14 C 0.127 3.873 15 O -0.216 6.216 16 C -0.385 4.385 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.877 5.877 20 Si 0.904 3.096 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.260 1.260 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.378 0.622 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.404 0.596 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -9.422 -14.475 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 H 0.102 0.898 4 C 0.007 3.993 5 O -0.377 6.377 6 C 0.014 3.986 7 N -0.381 5.381 8 C 0.051 3.949 9 C -0.167 4.167 10 C -0.209 4.209 11 C 0.066 3.934 12 F -0.134 7.134 13 C -0.247 4.247 14 C 0.073 3.927 15 O -0.122 6.122 16 C -0.461 4.461 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.515 5.515 20 Si 0.730 3.270 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.225 0.775 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.785 -8.838 -14.190 17.389 hybrid contribution -0.136 0.211 -0.579 0.631 sum 4.650 -8.627 -14.769 17.724 Atomic orbital electron populations 1.21777 0.94028 1.02027 1.02355 1.21302 0.97481 1.01040 0.92562 0.89808 1.22090 0.97960 0.94014 0.85266 1.86491 1.81579 1.53289 1.16301 1.21069 0.98684 0.94922 0.83911 1.44252 1.63879 1.28654 1.01360 1.17075 1.00150 0.94192 0.83491 1.19933 1.03833 0.96171 0.96809 1.20362 1.07477 1.01948 0.91133 1.17246 1.01570 0.95250 0.79361 1.91397 1.90857 1.88968 1.42147 1.20929 1.06529 0.98466 0.98797 1.18299 0.95621 0.87669 0.91129 1.83481 1.62747 1.31197 1.34743 1.20725 1.30139 1.10967 0.84224 0.87613 1.24440 0.95348 0.95629 0.98573 1.69651 1.33832 1.21410 1.26632 0.86211 0.79662 0.78004 0.83144 1.19875 1.20758 1.18443 0.92718 0.91990 0.92130 0.93435 0.93374 0.77541 0.92592 0.92721 0.76013 0.86012 0.86311 0.83791 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.96 37.16 0.33 -1.42 16 2 C -0.11 -1.20 2.66 -90.62 -0.24 -1.44 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.08 0.76 6.43 37.16 0.24 0.99 16 5 O -0.57 -5.42 13.19 -35.23 -0.46 -5.89 16 6 C 0.14 1.70 4.31 -4.04 -0.02 1.69 16 7 N -0.75 -12.33 5.46 -58.46 -0.32 -12.65 16 8 C 0.15 2.87 6.67 -83.52 -0.56 2.31 16 9 C -0.14 -2.38 9.31 -39.42 -0.37 -2.74 16 10 C -0.19 -3.26 10.02 -39.48 -0.40 -3.65 16 11 C 0.09 1.73 7.29 -39.43 -0.29 1.44 16 12 F -0.15 -3.05 17.26 2.25 0.04 -3.01 16 13 C -0.23 -5.02 9.14 -39.36 -0.36 -5.38 16 14 C 0.13 2.85 6.67 -38.93 -0.26 2.59 16 15 O -0.22 -5.43 7.83 0.00 0.00 -5.43 16 16 C -0.39 -10.64 9.95 30.88 0.31 -10.33 16 17 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 18 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 19 N -0.88 -25.16 13.96 55.48 0.77 -24.38 16 20 Si 0.90 21.10 28.62 -169.99 -4.86 16.24 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 26 H 0.06 0.83 7.18 -51.93 -0.37 0.45 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.38 1.76 9.12 45.56 0.42 2.17 16 30 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 31 H 0.05 0.62 7.96 -51.93 -0.41 0.20 16 32 H 0.40 7.19 7.02 -40.82 -0.29 6.90 16 33 H 0.12 1.63 6.73 -52.49 -0.35 1.27 16 34 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.14 3.40 5.64 -52.49 -0.30 3.10 16 36 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -30.13 308.34 -5.55 -35.68 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.66 Total: 9.08 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.70 Total: -14.29 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.46 Total: -37.03 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -0.46 Total: -11.32 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.86 Total: 16.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.13 -5.55 -35.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158246449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.753 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds