Wall clock time and date at job start Mon Mar 30 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46994 * 2 1 4 4 C 1.52999 * 109.47167 * 239.99909 * 2 1 3 5 5 O 1.42902 * 109.46860 * 65.00196 * 4 2 1 6 6 C 1.53002 * 109.47003 * 120.00063 * 2 1 3 7 7 N 1.46500 * 109.47156 * 294.99581 * 6 2 1 8 8 C 1.39926 * 120.00100 * 179.97438 * 7 6 2 9 9 C 1.38712 * 120.07682 * 359.73030 * 8 7 6 10 10 C 1.38213 * 120.01418 * 179.74442 * 9 8 7 11 11 C 1.38535 * 120.17605 * 0.55172 * 10 9 8 12 12 F 1.35103 * 119.91990 * 179.71992 * 11 10 9 13 13 C 1.38351 * 120.15928 * 359.70559 * 11 10 9 14 14 C 1.38726 * 119.98198 * 0.02562 * 13 11 10 15 15 O 1.35790 * 120.08974 * 179.97438 * 14 13 11 16 16 C 1.34803 * 117.00061 * 354.40415 * 15 14 13 17 17 H 1.08000 * 119.99607 * 5.06276 * 16 15 14 18 18 C 1.38630 * 120.00203 * 185.05743 * 16 15 14 19 19 N 1.31571 * 119.99979 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99805 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47433 * 89.99877 * 20 18 16 22 22 H 1.48503 * 109.47008 * 209.99776 * 20 18 16 23 23 H 1.48504 * 109.47240 * 329.99432 * 20 18 16 24 24 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47303 * 59.99979 * 1 2 3 26 26 H 1.09004 * 109.47064 * 300.00268 * 1 2 3 27 27 H 1.09001 * 109.47413 * 185.00045 * 4 2 1 28 28 H 1.08998 * 109.46996 * 305.00190 * 4 2 1 29 29 H 0.96708 * 113.99582 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47026 * 55.00038 * 6 2 1 31 31 H 1.08998 * 109.46811 * 175.00189 * 6 2 1 32 32 H 0.97002 * 119.99609 * 0.02562 * 7 6 2 33 33 H 1.07995 * 119.99375 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.91447 * 180.27330 * 10 9 8 35 35 H 1.07998 * 120.01323 * 180.02562 * 13 11 10 36 36 H 0.97004 * 119.99994 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6620 0.0168 -2.4130 6 6 2.0400 -0.7213 1.2493 7 7 1.6525 0.0354 2.4424 8 6 2.0087 -0.4307 3.7127 9 6 2.7238 -1.6120 3.8445 10 6 3.0796 -2.0684 5.0996 11 6 2.7140 -1.3551 6.2295 12 9 3.0595 -1.8090 7.4542 13 6 1.9960 -0.1788 6.1068 14 6 1.6403 0.2883 4.8499 15 8 0.9352 1.4423 4.7270 16 6 0.5119 2.0252 5.8663 17 1 0.8064 1.6187 6.8226 18 6 -0.3013 3.1465 5.8107 19 7 -0.7148 3.7152 6.9227 20 14 -0.8112 3.8493 4.1567 21 1 -2.0796 3.2135 3.7185 22 1 -1.0098 5.3156 4.2819 23 1 0.2508 3.5775 3.1548 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 3.1263 -0.7995 -1.2056 28 1 1.6053 -1.7198 -1.2951 29 1 1.9526 -0.3833 -3.2441 30 1 1.6053 -1.7198 1.2951 31 1 3.1263 -0.7994 1.2056 32 1 1.1483 0.8591 2.3517 33 1 3.0060 -2.1731 2.9660 34 1 3.6402 -2.9860 5.2001 35 1 1.7125 0.3756 6.9892 36 1 -1.2836 4.5000 6.8838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158246449.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:29 Heat of formation + Delta-G solvation = -124.331258 kcal Electronic energy + Delta-G solvation = -20374.147945 eV Core-core repulsion = 16965.447979 eV Total energy + Delta-G solvation = -3408.699966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.66306 -41.04166 -39.02551 -38.14167 -36.56228 -34.46657 -33.83615 -31.09191 -29.56244 -27.66689 -27.24470 -25.89444 -23.38365 -22.70952 -21.19590 -20.01460 -19.45246 -18.38952 -17.76322 -17.29817 -17.03191 -16.59253 -16.42308 -15.83057 -15.67962 -15.59981 -15.38784 -14.95281 -14.84863 -14.55231 -14.21435 -13.85058 -13.66137 -13.36432 -13.22156 -13.05382 -12.63062 -12.23885 -12.17108 -12.13523 -11.93995 -11.62881 -11.53569 -10.92217 -10.82605 -10.72184 -9.50944 -8.50126 -8.08729 -6.19448 0.44518 0.55933 1.30049 1.34027 1.48863 2.25505 2.47422 2.71634 2.94229 3.07383 3.43143 3.58909 3.88788 3.95526 3.99438 4.21904 4.25141 4.43978 4.55104 4.61128 4.64557 4.67860 4.73249 4.95291 4.97651 5.04538 5.20700 5.27499 5.33519 5.34199 5.41712 5.59669 5.86519 6.05010 6.51077 6.75953 6.83834 6.97720 7.55109 8.61944 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.007151 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.256219 B = 3914.364316 C = 6140.781304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.065 0.935 4 C 0.089 3.911 5 O -0.595 6.595 6 C 0.136 3.864 7 N -0.748 5.748 8 C 0.162 3.838 9 C -0.131 4.131 10 C -0.153 4.153 11 C 0.059 3.941 12 F -0.157 7.157 13 C -0.238 4.238 14 C 0.084 3.916 15 O -0.234 6.234 16 C -0.393 4.393 17 H 0.074 0.926 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.255 1.255 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.398 0.602 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.396 0.604 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.112 0.888 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -12.051 -17.952 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.083 0.917 4 C 0.011 3.989 5 O -0.404 6.404 6 C 0.012 3.988 7 N -0.380 5.380 8 C 0.059 3.941 9 C -0.154 4.154 10 C -0.173 4.173 11 C 0.038 3.962 12 F -0.136 7.136 13 C -0.259 4.259 14 C 0.032 3.968 15 O -0.142 6.142 16 C -0.469 4.469 17 H 0.092 0.908 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.179 1.179 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.248 0.752 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.230 0.770 33 H 0.189 0.811 34 H 0.179 0.821 35 H 0.129 0.871 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.278 -11.524 -17.716 22.047 hybrid contribution -0.424 0.756 0.441 0.973 sum 5.854 -10.767 -17.274 21.180 Atomic orbital electron populations 1.21753 0.94923 1.02344 1.01021 1.21272 0.96692 1.00462 0.93835 0.91653 1.22053 0.98966 0.94039 0.83864 1.86435 1.82055 1.54288 1.17577 1.21362 1.00070 0.95150 0.82197 1.44547 1.63024 1.28608 1.01808 1.17332 0.99140 0.94195 0.83423 1.20475 1.01779 0.94916 0.98255 1.20890 1.04511 1.01899 0.89977 1.17405 1.02939 0.95338 0.80479 1.91386 1.90913 1.88822 1.42503 1.20909 1.07397 0.99551 0.98052 1.18781 0.97122 0.88170 0.92692 1.83424 1.64835 1.32976 1.32963 1.20601 1.30570 1.11514 0.84265 0.90832 1.25266 0.95398 0.95917 1.02296 1.69749 1.35590 1.22549 1.28760 0.85218 0.79401 0.77565 0.78559 1.19115 1.19690 1.17888 0.91537 0.92382 0.94406 0.91695 0.91544 0.75154 0.90542 0.90570 0.77047 0.81109 0.82124 0.87050 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.96 71.98 0.65 -2.53 16 2 C -0.10 -2.05 2.66 -10.79 -0.03 -2.07 16 3 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.09 1.21 6.43 71.98 0.46 1.67 16 5 O -0.59 -9.42 13.19 -148.98 -1.97 -11.39 16 6 C 0.14 2.72 4.31 86.38 0.37 3.09 16 7 N -0.75 -22.90 5.46 -338.87 -1.85 -24.75 16 8 C 0.16 5.77 6.67 38.27 0.26 6.03 16 9 C -0.13 -3.68 9.31 22.38 0.21 -3.47 16 10 C -0.15 -4.61 10.02 22.33 0.22 -4.39 16 11 C 0.06 2.32 7.29 22.37 0.16 2.48 16 12 F -0.16 -6.13 17.26 44.97 0.78 -5.36 16 13 C -0.24 -11.04 9.14 22.41 0.20 -10.83 16 14 C 0.08 3.86 6.67 22.69 0.15 4.01 16 15 O -0.23 -12.27 7.83 -22.90 -0.18 -12.45 16 16 C -0.39 -23.17 9.95 67.91 0.68 -22.49 16 17 H 0.07 4.66 5.44 -2.91 -0.02 4.65 16 18 C 0.01 0.54 5.49 84.83 0.47 1.00 16 19 N -0.93 -55.92 13.96 21.61 0.30 -55.62 16 20 Si 0.97 44.88 28.62 68.60 1.96 46.85 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.31 7.82 -2.39 -0.02 1.30 16 26 H 0.04 0.99 7.18 -2.38 -0.02 0.98 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.40 2.38 9.12 -74.05 -0.68 1.71 16 30 H 0.08 1.29 7.94 -2.39 -0.02 1.27 16 31 H 0.08 1.27 7.96 -2.39 -0.02 1.25 16 32 H 0.40 13.72 7.02 -92.71 -0.65 13.07 16 33 H 0.17 3.23 6.73 -2.91 -0.02 3.21 16 34 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.11 5.81 5.64 -2.91 -0.02 5.80 16 36 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -70.08 308.34 2.64 -67.44 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.20 Total: 22.79 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.80 Total: -27.51 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -1.55 Total: -80.37 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -2.15 Total: -23.84 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.78 Total: -5.36 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.96 Total: 46.85 kcal Total: -70.08 2.64 -67.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158246449.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.892 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds