Wall clock time and date at job start Mon Mar 30 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48502 * 109.46832 * 270.00066 * 3 2 1 5 5 H 1.48505 * 109.46916 * 29.99650 * 3 2 1 6 6 H 1.48501 * 109.47420 * 149.99643 * 3 2 1 7 7 C 1.38807 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99889 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99968 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47081 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00230 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.48416 * 125.87178 * 359.96995 * 13 11 10 15 15 C 1.52547 * 105.69261 * 176.90956 * 14 13 11 16 16 H 1.09002 * 110.01445 * 273.17087 * 15 14 13 17 17 C 1.51523 * 117.04436 * 145.63614 * 15 14 13 18 18 C 1.53812 * 107.09343 * 181.83461 * 17 15 14 19 19 C 1.52540 * 111.61581 * 57.30484 * 18 17 15 20 20 C 1.53780 * 111.65610 * 305.93685 * 19 18 17 21 21 C 1.51704 * 107.07814 * 57.66279 * 20 19 18 22 22 H 1.08999 * 111.42229 * 56.10917 * 21 20 19 23 23 C 1.48747 * 125.88031 * 179.97438 * 13 11 10 24 24 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47297 * 60.00293 * 10 9 7 26 26 H 1.09004 * 109.47015 * 299.99937 * 10 9 7 27 27 H 1.09001 * 110.20535 * 57.85523 * 14 13 11 28 28 H 1.08997 * 110.20330 * 295.96196 * 14 13 11 29 29 H 1.08999 * 109.92822 * 301.23046 * 17 15 14 30 30 H 1.08998 * 109.92782 * 62.44247 * 17 15 14 31 31 H 1.08995 * 109.05287 * 296.75566 * 18 17 15 32 32 H 1.09000 * 108.99270 * 177.81317 * 18 17 15 33 33 H 1.09000 * 109.04492 * 185.37260 * 19 18 17 34 34 H 1.09002 * 108.98235 * 66.45652 * 19 18 17 35 35 H 1.08999 * 109.93242 * 298.27305 * 20 19 18 36 36 H 1.08995 * 110.00680 * 177.09320 * 20 19 18 37 37 H 1.09007 * 110.67939 * 36.14101 * 23 13 11 38 38 H 1.09003 * 110.68352 * 272.98403 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7281 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7910 -5.5024 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 4.3252 -6.2501 0.0007 15 6 4.8290 -7.6877 0.0803 16 1 4.8950 -8.0029 1.1217 17 6 6.1109 -8.0106 -0.6604 18 6 6.3786 -9.5128 -0.4671 19 6 5.2100 -10.3600 -0.9604 20 6 3.8834 -9.9287 -0.3131 21 6 3.6842 -8.4610 -0.6408 22 1 3.7074 -8.2865 -1.7164 23 6 2.4678 -7.7823 0.0003 24 1 -0.4850 0.8400 -0.0004 25 1 3.1244 -3.7315 0.8906 26 1 3.1244 -3.7314 -0.8895 27 1 4.6666 -5.6831 0.8669 28 1 4.6731 -5.7797 -0.9189 29 1 5.9934 -7.7875 -1.7208 30 1 6.9353 -7.4300 -0.2466 31 1 6.5402 -9.7120 0.5922 32 1 7.2760 -9.7874 -1.0215 33 1 5.4009 -11.4053 -0.7176 34 1 5.1282 -10.2556 -2.0423 35 1 3.9356 -10.0645 0.7672 36 1 3.0609 -10.5156 -0.7218 37 1 1.5738 -7.9465 -0.6015 38 1 2.3187 -8.1412 1.0187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178273122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:59 Heat of formation + Delta-G solvation = -51.903002 kcal Electronic energy + Delta-G solvation = -18319.655456 eV Core-core repulsion = 15480.309392 eV Total energy + Delta-G solvation = -2839.346065 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48330 -38.33018 -35.37575 -32.41161 -31.94906 -31.06263 -28.97930 -27.29799 -25.50097 -24.59879 -21.49141 -21.42410 -20.28429 -19.24888 -17.63388 -16.42870 -16.00881 -15.23044 -15.16631 -14.78837 -14.66250 -14.51598 -14.04473 -13.70329 -13.03632 -12.97886 -12.74383 -12.51100 -12.39271 -12.09839 -11.89732 -11.79928 -11.30865 -11.09228 -11.04605 -11.00445 -10.81332 -10.75733 -10.54123 -10.09018 -9.79212 -9.34357 -9.04899 -8.46000 -8.20840 -6.48048 -6.19815 -3.90281 2.92388 3.12680 3.23498 3.26981 3.31515 3.63192 4.04050 4.22210 4.34840 4.38968 4.75782 4.84850 4.93094 5.03831 5.12417 5.15197 5.16144 5.21739 5.30623 5.32861 5.49147 5.53348 5.62299 5.64206 5.70481 5.77681 5.81165 5.86761 5.90460 5.93883 5.98855 6.06589 6.17290 6.21922 6.42365 7.61209 7.73124 8.37055 8.61391 9.25275 10.87658 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039113 B = 0.003732 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.700602 B = 7500.036284 C = 8117.422485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.518 6.518 13 N -0.631 5.631 14 C 0.111 3.889 15 C -0.106 4.106 16 H 0.083 0.917 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.104 4.104 21 C -0.107 4.107 22 H 0.086 0.914 23 C 0.116 3.884 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.942 -19.569 -0.881 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.296 4.296 11 C 0.337 3.663 12 O -0.393 6.393 13 N -0.369 5.369 14 C -0.012 4.012 15 C -0.125 4.125 16 H 0.101 0.899 17 C -0.142 4.142 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.126 4.126 22 H 0.105 0.895 23 C -0.006 4.006 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.928 -19.667 -0.871 23.018 hybrid contribution 2.042 1.331 0.021 2.438 sum 13.969 -18.336 -0.850 23.067 Atomic orbital electron populations 1.70022 1.05952 1.27429 1.46893 1.24996 0.95029 0.99015 0.94559 0.86164 0.79410 0.81560 0.78342 1.20269 1.20753 1.19689 1.22864 0.94893 0.91631 1.58901 0.90954 1.85392 1.05078 0.96337 1.96705 1.23501 1.06351 0.95059 1.04725 1.20016 0.85685 0.85484 0.75141 1.90702 1.14948 1.85146 1.48464 1.49210 1.06324 1.05643 1.75699 1.21781 0.80355 0.96952 1.02100 1.22009 0.95625 0.94462 1.00422 0.89866 1.21318 0.96436 0.96009 1.00463 1.21533 0.97956 0.94587 1.01432 1.21529 0.94361 0.99154 1.00527 1.21332 0.97350 0.94524 1.01016 1.22269 0.94720 0.95165 1.00445 0.89523 1.21998 0.97634 0.80459 1.00543 0.92196 0.89379 0.89388 0.91101 0.91273 0.91377 0.91435 0.92100 0.91984 0.92019 0.92083 0.91449 0.91470 0.90372 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -15.48 9.50 30.94 0.29 -15.19 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 10 C -0.15 -3.11 5.37 36.00 0.19 -2.92 16 11 C 0.55 11.11 7.88 -10.99 -0.09 11.02 16 12 O -0.52 -12.52 16.15 5.56 0.09 -12.43 16 13 N -0.63 -9.64 3.38 -170.35 -0.58 -10.22 16 14 C 0.11 1.28 6.24 -3.22 -0.02 1.26 16 15 C -0.11 -0.93 2.31 -90.08 -0.21 -1.14 16 16 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 17 C -0.10 -0.74 5.68 -27.06 -0.15 -0.90 16 18 C -0.12 -0.73 5.85 -26.54 -0.16 -0.89 16 19 C -0.12 -0.75 5.84 -26.56 -0.16 -0.90 16 20 C -0.10 -0.75 5.69 -26.98 -0.15 -0.91 16 21 C -0.11 -0.99 2.53 -89.59 -0.23 -1.21 16 22 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 23 C 0.12 1.46 6.55 -2.63 -0.02 1.44 16 24 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 26 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 29 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 7.99 -51.93 -0.41 0.06 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.07 8.06 -51.92 -0.42 0.65 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -33.97 318.86 -9.24 -43.21 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.27 Total: -3.97 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.78 Total: -8.31 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.16 Total: -35.95 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.97 -9.24 -43.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178273122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.693 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds