Wall clock time and date at job start Mon Mar 30 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00255 * 2 1 4 4 H 1.48502 * 109.46832 * 270.00066 * 3 2 1 5 5 H 1.48505 * 109.46916 * 29.99650 * 3 2 1 6 6 H 1.48501 * 109.47420 * 149.99643 * 3 2 1 7 7 C 1.38807 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99889 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.80993 * 99.99968 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47081 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00230 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00135 * 180.02562 * 11 10 9 14 14 C 1.48416 * 125.87178 * 359.96995 * 13 11 10 15 15 C 1.52547 * 105.69261 * 176.90956 * 14 13 11 16 16 H 1.09002 * 110.01445 * 273.17087 * 15 14 13 17 17 C 1.51523 * 117.04436 * 145.63614 * 15 14 13 18 18 C 1.53812 * 107.09343 * 181.83461 * 17 15 14 19 19 C 1.52540 * 111.61581 * 57.30484 * 18 17 15 20 20 C 1.53780 * 111.65610 * 305.93685 * 19 18 17 21 21 C 1.51704 * 107.07814 * 57.66279 * 20 19 18 22 22 H 1.08999 * 111.42229 * 56.10917 * 21 20 19 23 23 C 1.48747 * 125.88031 * 179.97438 * 13 11 10 24 24 H 0.97001 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47297 * 60.00293 * 10 9 7 26 26 H 1.09004 * 109.47015 * 299.99937 * 10 9 7 27 27 H 1.09001 * 110.20535 * 57.85523 * 14 13 11 28 28 H 1.08997 * 110.20330 * 295.96196 * 14 13 11 29 29 H 1.08999 * 109.92822 * 301.23046 * 17 15 14 30 30 H 1.08998 * 109.92782 * 62.44247 * 17 15 14 31 31 H 1.08995 * 109.05287 * 296.75566 * 18 17 15 32 32 H 1.09000 * 108.99270 * 177.81317 * 18 17 15 33 33 H 1.09000 * 109.04492 * 185.37260 * 19 18 17 34 34 H 1.09002 * 108.98235 * 66.45652 * 19 18 17 35 35 H 1.08999 * 109.93242 * 298.27305 * 20 19 18 36 36 H 1.08995 * 110.00680 * 177.09320 * 20 19 18 37 37 H 1.09007 * 110.67939 * 36.14101 * 23 13 11 38 38 H 1.09003 * 110.68352 * 272.98403 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7281 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7910 -5.5024 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 4.3252 -6.2501 0.0007 15 6 4.8290 -7.6877 0.0803 16 1 4.8950 -8.0029 1.1217 17 6 6.1109 -8.0106 -0.6604 18 6 6.3786 -9.5128 -0.4671 19 6 5.2100 -10.3600 -0.9604 20 6 3.8834 -9.9287 -0.3131 21 6 3.6842 -8.4610 -0.6408 22 1 3.7074 -8.2865 -1.7164 23 6 2.4678 -7.7823 0.0003 24 1 -0.4850 0.8400 -0.0004 25 1 3.1244 -3.7315 0.8906 26 1 3.1244 -3.7314 -0.8895 27 1 4.6666 -5.6831 0.8669 28 1 4.6731 -5.7797 -0.9189 29 1 5.9934 -7.7875 -1.7208 30 1 6.9353 -7.4300 -0.2466 31 1 6.5402 -9.7120 0.5922 32 1 7.2760 -9.7874 -1.0215 33 1 5.4009 -11.4053 -0.7176 34 1 5.1282 -10.2556 -2.0423 35 1 3.9356 -10.0645 0.7672 36 1 3.0609 -10.5156 -0.7218 37 1 1.5738 -7.9465 -0.6015 38 1 2.3187 -8.1412 1.0187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178273122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:59 Heat of formation + Delta-G solvation = -72.855476 kcal Electronic energy + Delta-G solvation = -18320.564024 eV Core-core repulsion = 15480.309392 eV Total energy + Delta-G solvation = -2840.254632 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48658 -39.66319 -36.39725 -34.60239 -32.73909 -32.16428 -30.32050 -28.24401 -27.66747 -25.59355 -22.27442 -22.11718 -20.95371 -20.72104 -19.57165 -17.93668 -17.20493 -16.89734 -16.66461 -15.88148 -15.76518 -15.49042 -15.36823 -14.87126 -14.51850 -14.14492 -13.89108 -13.57497 -13.36585 -13.22602 -13.12911 -12.89908 -12.88418 -12.63850 -12.57753 -11.95367 -11.79738 -11.75544 -11.35498 -11.18006 -11.15430 -10.99339 -10.72916 -10.31035 -9.74725 -8.70638 -8.35994 -6.15437 1.21802 1.42285 1.43566 1.53727 1.55553 2.03481 2.26024 2.98022 3.15725 3.33918 3.59600 3.71577 3.83849 4.12990 4.19611 4.22509 4.27613 4.38514 4.42638 4.52198 4.53843 4.56765 4.66371 4.70839 4.77523 4.83324 5.05632 5.06896 5.18676 5.28070 5.33034 5.36234 5.37395 5.39906 5.46258 5.61931 6.18261 6.35565 7.04695 7.07706 8.73476 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039113 B = 0.003732 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.700602 B = 7500.036284 C = 8117.422485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.119 4.119 11 C 0.544 3.456 12 O -0.570 6.570 13 N -0.623 5.623 14 C 0.101 3.899 15 C -0.095 4.095 16 H 0.091 0.909 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.101 4.101 21 C -0.097 4.097 22 H 0.082 0.918 23 C 0.109 3.891 24 H 0.272 0.728 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.139 -20.272 -0.801 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.270 4.270 11 C 0.333 3.667 12 O -0.449 6.449 13 N -0.358 5.358 14 C -0.021 4.021 15 C -0.114 4.114 16 H 0.109 0.891 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.116 4.116 22 H 0.100 0.900 23 C -0.013 4.013 24 H 0.081 0.919 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.184 -20.420 -0.793 25.459 hybrid contribution 1.090 1.410 -0.004 1.782 sum 16.273 -19.010 -0.797 25.037 Atomic orbital electron populations 1.70189 1.08030 1.28690 1.47872 1.26167 0.95999 1.03390 0.93608 0.84917 0.78185 0.75776 0.78864 1.19203 1.20205 1.18108 1.23190 0.95322 0.91833 1.59122 0.89922 1.85584 1.10526 0.99306 1.97039 1.23293 1.03387 0.94038 1.06239 1.19800 0.85469 0.86072 0.75407 1.90677 1.17072 1.85800 1.51350 1.49208 1.07771 1.05763 1.73069 1.22122 0.77709 0.99344 1.02882 1.21994 0.96175 0.92125 1.01134 0.89065 1.21326 0.95540 0.96973 1.00083 1.21530 0.98224 0.93607 1.01959 1.21524 0.93653 0.99881 1.00332 1.21339 0.98234 0.92729 1.01569 1.22204 0.92937 0.96547 0.99889 0.89958 1.22231 0.98733 0.79085 1.01212 0.91924 0.87661 0.87719 0.90265 0.90537 0.91568 0.90464 0.91586 0.90969 0.90853 0.92225 0.90854 0.91217 0.92133 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.77 13.22 21.65 0.29 -56.48 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.55 -31.89 9.50 67.96 0.65 -31.25 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.74 20.57 -56.49 -1.16 -9.91 16 10 C -0.12 -5.06 5.37 71.24 0.38 -4.67 16 11 C 0.54 22.36 7.88 87.66 0.69 23.06 16 12 O -0.57 -28.69 16.15 -3.03 -0.05 -28.74 16 13 N -0.62 -18.63 3.38 -811.25 -2.75 -21.37 16 14 C 0.10 2.10 6.24 85.86 0.54 2.64 16 15 C -0.10 -1.41 2.31 -10.45 -0.02 -1.44 16 16 H 0.09 1.27 7.96 -2.39 -0.02 1.25 16 17 C -0.10 -1.12 5.68 30.38 0.17 -0.94 16 18 C -0.12 -1.03 5.85 30.72 0.18 -0.85 16 19 C -0.12 -1.11 5.84 30.70 0.18 -0.93 16 20 C -0.10 -1.21 5.69 30.43 0.17 -1.03 16 21 C -0.10 -1.60 2.53 -10.13 -0.03 -1.63 16 22 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 23 C 0.11 2.67 6.55 86.06 0.56 3.24 16 24 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.11 4.09 8.14 -2.39 -0.02 4.08 16 26 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.52 8.07 -2.39 -0.02 1.50 16 29 H 0.07 0.78 8.05 -2.39 -0.02 0.76 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.82 7.99 -2.39 -0.02 0.80 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.70 8.06 -2.38 -0.02 1.68 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -76.02 318.86 3.31 -72.71 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.02 Total: 10.39 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.94 Total: -12.60 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.46 Total: -77.85 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.05 Total: -28.74 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.91 kcal Total: -76.02 3.31 -72.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178273122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.147 kcal (2) G-P(sol) polarization free energy of solvation -76.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds