Wall clock time and date at job start Mon Mar 30 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47298 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00283 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99762 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00337 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47352 * 179.97438 * 15 13 12 17 17 H 1.08994 * 110.53509 * 55.69603 * 16 15 13 18 18 N 1.47315 * 110.59832 * 292.86925 * 16 15 13 19 19 C 1.34527 * 106.61906 * 241.47294 * 18 16 15 20 20 O 1.21540 * 123.76986 * 179.97438 * 19 18 16 21 21 N 1.33783 * 112.45758 * 0.02562 * 19 18 16 22 22 C 1.35116 * 111.69091 * 359.90656 * 21 19 18 23 23 O 1.21240 * 127.34369 * 180.10002 * 22 21 19 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 28 28 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 29 29 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 30 30 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 31 31 H 0.96997 * 119.99674 * 359.97438 * 12 11 10 32 32 H 1.09002 * 109.46875 * 299.99342 * 15 13 12 33 33 H 1.08998 * 109.46890 * 59.99540 * 15 13 12 34 34 H 0.96997 * 126.68907 * 61.50650 * 18 16 15 35 35 H 0.97007 * 124.17838 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9830 -7.3713 -0.0015 14 8 0.7906 -7.5929 -0.0024 15 6 2.9622 -8.5168 -0.0014 16 6 2.1972 -9.8418 -0.0020 17 1 1.5081 -9.8851 -0.8453 18 7 1.4736 -10.0230 1.2683 19 6 1.9730 -11.1333 1.8407 20 8 1.5942 -11.5714 2.9093 21 7 2.9339 -11.7006 1.1028 22 6 3.1596 -11.0124 -0.0379 23 8 3.9623 -11.2740 -0.9080 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.8719 -3.6044 -0.8906 28 1 2.8719 -3.6044 0.8894 29 1 0.8533 -5.0451 0.8886 30 1 0.8539 -5.0446 -0.8913 31 1 3.3858 -5.9234 -0.0002 32 1 3.5894 -8.4587 -0.8911 33 1 3.5883 -8.4595 0.8889 34 1 0.7732 -9.4531 1.6227 35 1 3.4092 -12.5080 1.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179213694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:43 Heat of formation + Delta-G solvation = -131.782776 kcal Electronic energy + Delta-G solvation = -19598.965037 eV Core-core repulsion = 16209.861911 eV Total energy + Delta-G solvation = -3389.103126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.40791 -40.67229 -39.73937 -37.45366 -36.88838 -35.19415 -35.00137 -33.17371 -31.81483 -28.72392 -26.70689 -24.75058 -23.74628 -22.54447 -22.28005 -21.24408 -19.43967 -18.59441 -18.31192 -17.78033 -17.60168 -16.96100 -16.81610 -16.67600 -16.38633 -16.29072 -15.73206 -15.33542 -14.96583 -14.60478 -14.16705 -14.04942 -13.71901 -13.52987 -12.88956 -12.68157 -12.54063 -12.39213 -12.23433 -11.64143 -11.58040 -11.51035 -11.47380 -11.24368 -10.85051 -10.56205 -10.53877 -10.05958 -8.18993 -6.30248 0.46980 1.39592 1.42629 1.45013 1.52876 1.61961 1.90504 2.00397 2.30557 2.43605 2.94342 3.15026 3.43519 3.86434 3.89633 4.21917 4.25672 4.37512 4.50733 4.59253 4.65296 4.98463 5.03989 5.06239 5.19890 5.45499 5.54779 5.73322 5.74042 5.85967 5.87182 6.23413 6.32622 6.57791 6.87921 7.08169 7.24912 7.39580 8.92771 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044507 B = 0.002725 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.970092 B =10271.170674 C =10541.871844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.130 3.870 12 N -0.713 5.713 13 C 0.512 3.488 14 O -0.579 6.579 15 C -0.133 4.133 16 C 0.109 3.891 17 H 0.147 0.853 18 N -0.706 5.706 19 C 0.705 3.295 20 O -0.586 6.586 21 N -0.668 5.668 22 C 0.546 3.454 23 O -0.481 6.481 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.417 0.583 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.446 0.554 35 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.758 -21.192 -0.558 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.213 1.213 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.142 4.142 11 C 0.006 3.994 12 N -0.364 5.364 13 C 0.299 3.701 14 O -0.460 6.460 15 C -0.173 4.173 16 C 0.000 4.000 17 H 0.164 0.836 18 N -0.371 5.371 19 C 0.404 3.596 20 O -0.463 6.463 21 N -0.339 5.339 22 C 0.332 3.668 23 O -0.351 6.351 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.254 0.746 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.292 0.708 35 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 8.986 -21.520 -0.522 23.326 hybrid contribution 0.081 1.067 0.323 1.118 sum 9.067 -20.452 -0.199 22.373 Atomic orbital electron populations 1.70099 1.07918 1.27834 1.51695 1.26006 0.95715 1.03496 0.94831 0.85504 0.78222 0.78081 0.79266 1.21295 1.19065 1.19012 1.21685 0.93772 0.92135 1.50446 0.91543 1.18942 0.94488 0.93005 0.95021 1.21601 0.98410 0.92040 1.02108 1.21209 0.91933 0.85421 1.00849 1.45954 1.11328 1.05103 1.74056 1.20856 0.89495 0.84460 0.75256 1.90715 1.18479 1.85201 1.51562 1.21889 0.97814 0.88490 1.09128 1.21872 0.94103 0.93692 0.90346 0.83623 1.45712 1.41678 1.27589 1.22080 1.15943 0.79463 0.81262 0.82921 1.91048 1.64989 1.67990 1.22257 1.44224 1.37653 1.30270 1.21757 1.20648 0.82051 0.83786 0.80309 1.90881 1.35304 1.71227 1.37707 0.92835 0.99044 0.98954 0.91334 0.91466 0.93094 0.92968 0.74582 0.83296 0.85477 0.70792 0.71340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.14 13.29 21.45 0.28 -55.86 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 3 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 11 C 0.13 3.95 5.67 86.38 0.49 4.44 16 12 N -0.71 -14.61 5.56 -463.08 -2.57 -17.18 16 13 C 0.51 9.89 7.73 87.66 0.68 10.57 16 14 O -0.58 -15.64 14.99 -3.03 -0.05 -15.68 16 15 C -0.13 -1.32 5.46 29.85 0.16 -1.15 16 16 C 0.11 1.29 3.16 44.37 0.14 1.43 16 17 H 0.15 1.63 8.01 -2.39 -0.02 1.61 16 18 N -0.71 -10.83 5.88 -459.61 -2.70 -13.54 16 19 C 0.70 12.49 9.00 179.44 1.61 14.10 16 20 O -0.59 -15.34 18.04 -3.84 -0.07 -15.41 16 21 N -0.67 -7.95 5.71 -440.68 -2.52 -10.47 16 22 C 0.55 6.74 8.17 87.89 0.72 7.46 16 23 O -0.48 -8.17 18.02 -2.91 -0.05 -8.22 16 24 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 25 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.42 5.87 8.47 -92.71 -0.79 5.09 16 32 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.45 7.72 8.18 -92.71 -0.76 6.96 16 35 H 0.44 3.58 8.96 -92.70 -0.83 2.75 16 Total: -1.00 -74.32 311.16 -2.07 -76.38 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.22 Total: 9.28 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 4.81 Total: 5.83 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -7.51 Total: -97.05 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.17 Total: -39.31 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -74.32 -2.07 -76.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179213694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.399 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds