Wall clock time and date at job start Mon Mar 30 2020 04:56:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37845 * 119.99829 * 2 1
4 4 N 1.30237 * 124.74781 * 0.02813 * 3 2 1
5 5 C 1.30872 * 117.26110 * 180.02562 * 4 3 2
6 6 C 1.36712 * 114.03496 * 359.97438 * 5 4 3
7 7 C 1.46221 * 126.10979 * 180.02562 * 6 5 4
8 8 O 1.21748 * 120.00110 * 359.97438 * 7 6 5
9 9 N 1.34776 * 119.99526 * 179.97438 * 7 6 5
10 10 C 1.46503 * 120.00025 * 180.02562 * 9 7 6
11 11 C 1.52995 * 109.47418 * 180.02562 * 10 9 7
12 12 C 1.53005 * 109.47008 * 179.97438 * 11 10 9
13 13 C 1.50704 * 109.46823 * 180.02562 * 12 11 10
14 14 H 1.07998 * 120.00125 * 359.97438 * 13 12 11
15 15 C 1.37878 * 119.99816 * 180.02562 * 13 12 11
16 16 N 1.31514 * 119.99890 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 119.99843 * 179.97438 * 15 13 12
18 18 H 1.48491 * 109.47077 * 90.00202 * 17 15 13
19 19 H 1.48507 * 109.46831 * 210.00105 * 17 15 13
20 20 H 1.48499 * 109.47240 * 329.99816 * 17 15 13
21 21 S 1.70923 * 124.74737 * 179.72426 * 3 2 1
22 22 H 1.08994 * 109.47444 * 299.99713 * 1 2 3
23 23 H 1.08997 * 109.47066 * 59.99983 * 1 2 3
24 24 H 1.09005 * 109.47054 * 179.97438 * 1 2 3
25 25 H 0.97000 * 120.00746 * 179.97438 * 2 1 3
26 26 H 1.08002 * 122.98339 * 179.97438 * 5 4 3
27 27 H 0.97005 * 120.00454 * 359.97438 * 9 7 6
28 28 H 1.09003 * 109.47162 * 300.00293 * 10 9 7
29 29 H 1.08999 * 109.47209 * 59.99564 * 10 9 7
30 30 H 1.08998 * 109.47241 * 299.99770 * 11 10 9
31 31 H 1.09007 * 109.47172 * 59.99873 * 11 10 9
32 32 H 1.08995 * 109.47380 * 299.99627 * 12 11 10
33 33 H 1.08999 * 109.46885 * 60.00665 * 12 11 10
34 34 H 0.96997 * 119.99601 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1542 1.1938 0.0000
4 7 1.5985 2.3717 0.0005
5 6 2.3950 3.4102 -0.0001
6 6 3.7246 3.0922 -0.0006
7 6 4.8375 4.0407 -0.0008
8 8 4.6169 5.2380 -0.0010
9 7 6.1074 3.5893 -0.0009
10 6 7.2225 4.5395 -0.0005
11 6 8.5463 3.7725 -0.0013
12 6 9.7108 4.7649 -0.0016
13 6 11.0147 4.0093 -0.0030
14 1 11.0130 2.9293 -0.0032
15 6 12.2098 4.6968 -0.0029
16 7 12.2119 6.0119 -0.0011
17 14 13.8261 3.7602 -0.0039
18 1 14.2539 3.5129 -1.4042
19 1 14.8625 4.5607 0.6963
20 1 13.6466 2.4625 0.6954
21 16 3.8575 1.3353 0.0068
22 1 -0.3634 0.5137 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.9501 -0.8400 0.0004
26 1 2.0339 4.4280 -0.0001
27 1 6.2832 2.6353 -0.0004
28 1 7.1658 5.1666 -0.8903
29 1 7.1657 5.1661 0.8896
30 1 8.6032 3.1452 0.8883
31 1 8.6028 3.1462 -0.8918
32 1 9.6537 5.3918 -0.8914
33 1 9.6544 5.3913 0.8886
34 1 13.0527 6.4955 -0.0007
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000179213732.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:42
Heat of formation + Delta-G solvation = -3.070326 kcal
Electronic energy + Delta-G solvation = -17040.582804 eV
Core-core repulsion = 14099.813939 eV
Total energy + Delta-G solvation = -2940.768864 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.094 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.13843 -39.06426 -36.18798 -35.34612 -33.31057 -31.38310 -29.90774 -27.73150
-26.64708 -24.61972 -23.18190 -21.34399 -20.66674 -19.64783 -19.26157 -17.06235
-16.84932 -16.23199 -15.69104 -15.37780 -15.14044 -14.99257 -14.46433 -14.25105
-13.99669 -13.46592 -13.39415 -12.75081 -12.28504 -11.89026 -11.73106 -11.67464
-10.90600 -10.73136 -10.66323 -10.59555 -10.21228 -9.86197 -9.85945 -9.61549
-9.39320 -9.11458 -8.80965 -8.36537 -8.06663 -6.01124 -4.04180 0.33790
0.70613 1.41565 2.46742 2.73365 3.31266 3.34978 3.37246 3.39144
3.42787 4.30429 4.44878 4.68851 5.01295 5.05333 5.22035 5.33429
5.34652 5.71198 5.75427 5.78994 6.17161 6.34471 6.46099 6.55658
6.60632 6.82853 7.00416 7.55892 7.64402 7.69649 7.77119 7.97704
8.33667 8.39557 9.02445 9.59907 11.10196
Molecular weight = 269.09amu
Principal moments of inertia in cm(-1)
A = 0.041287 B = 0.002966 C = 0.002776
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 678.022412 B = 9437.367286 C =10084.335273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.100 3.900
2 N -0.691 5.691
3 C 0.320 3.680
4 N -0.551 5.551
5 C 0.170 3.830
6 C -0.332 4.332
7 C 0.597 3.403
8 O -0.537 6.537
9 N -0.722 5.722
10 C 0.117 3.883
11 C -0.121 4.121
12 C 0.024 3.976
13 C -0.522 4.522
14 H 0.055 0.945
15 C 0.056 3.944
16 N -0.894 5.894
17 Si 0.893 3.107
18 H -0.281 1.281
19 H -0.286 1.286
20 H -0.274 1.274
21 S 0.133 5.867
22 H 0.062 0.938
23 H 0.062 0.938
24 H 0.078 0.922
25 H 0.417 0.583
26 H 0.189 0.811
27 H 0.394 0.606
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.020 0.980
33 H 0.020 0.980
34 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.570 -14.498 0.016 26.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.329 5.329
3 C -0.049 4.049
4 N -0.276 5.276
5 C 0.012 3.988
6 C -0.458 4.458
7 C 0.382 3.618
8 O -0.416 6.416
9 N -0.372 5.372
10 C -0.005 4.005
11 C -0.159 4.159
12 C -0.014 4.014
13 C -0.561 4.561
14 H 0.074 0.926
15 C -0.145 4.145
16 N -0.533 5.533
17 Si 0.721 3.279
18 H -0.207 1.207
19 H -0.212 1.212
20 H -0.199 1.199
21 S 0.383 5.617
22 H 0.081 0.919
23 H 0.081 0.919
24 H 0.097 0.903
25 H 0.254 0.746
26 H 0.206 0.794
27 H 0.228 0.772
28 H 0.085 0.915
29 H 0.085 0.915
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.038 0.962
33 H 0.038 0.962
34 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -22.529 -14.201 0.030 26.631
hybrid contribution 0.868 -0.430 -0.017 0.969
sum -21.661 -14.631 0.014 26.140
Atomic orbital electron populations
1.21639 0.77760 1.02393 1.02798 1.43663 1.07018 1.03009 1.79252
1.23874 0.93499 0.90687 0.96855 1.66226 1.37736 0.96380 1.27294
1.22095 0.86532 0.98266 0.91900 1.25399 0.98912 0.94390 1.27099
1.16590 0.81633 0.86952 0.76606 1.90842 1.84508 1.15120 1.51168
1.46107 1.05697 1.10538 1.74897 1.21693 0.84747 0.91782 1.02284
1.21903 0.93330 0.99800 1.00914 1.19032 0.90771 0.93852 0.97722
1.21202 0.90937 0.92989 1.50927 0.92649 1.25033 0.99299 0.94862
0.95296 1.69966 1.26634 1.06104 1.50553 0.86579 0.83429 0.79805
0.78084 1.20664 1.21209 1.19906 1.83905 1.02301 1.03227 1.72257
0.91902 0.91904 0.90317 0.74584 0.79443 0.77221 0.91463 0.91463
0.92697 0.92696 0.96209 0.96200 0.92922
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.48 10.95 59.85 0.66 1.13 16
2 N -0.69 -4.28 5.84 -69.21 -0.40 -4.69 16
3 C 0.32 3.09 8.05 -87.97 -0.71 2.38 16
4 N -0.55 -6.48 10.06 -14.76 -0.15 -6.63 16
5 C 0.17 2.13 11.14 -18.51 -0.21 1.93 16
6 C -0.33 -4.37 6.50 -36.93 -0.24 -4.61 16
7 C 0.60 9.69 7.77 -13.06 -0.10 9.58 16
8 O -0.54 -10.53 16.87 5.15 0.09 -10.44 16
9 N -0.72 -11.18 5.55 -61.76 -0.34 -11.52 16
10 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16
11 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16
12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16
13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16
14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16
15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
16 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16
17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16
18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
21 S 0.13 1.28 22.33 -107.50 -2.40 -1.12 16
22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
24 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16
25 H 0.42 1.45 8.95 -40.82 -0.37 1.09 16
26 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16
27 H 0.39 5.16 7.64 -40.82 -0.31 4.85 16
28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
31 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16
32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
LS Contribution 313.66 15.07 4.73 4.73
Total: -1.00 -33.93 313.66 -8.53 -42.46
By element:
Atomic # 1 Polarization: 4.30 SS G_CDS: -4.45 Total: -0.15 kcal
Atomic # 6 Polarization: -1.66 SS G_CDS: -1.31 Total: -2.98 kcal
Atomic # 7 Polarization: -48.83 SS G_CDS: -0.16 Total: -48.99 kcal
Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Atomic # 16 Polarization: 1.28 SS G_CDS: -2.40 Total: -1.12 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -33.93 -8.53 -42.46 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000179213732.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.387 kcal
(2) G-P(sol) polarization free energy of solvation -33.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds