Wall clock time and date at job start Mon Mar 30 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37845 * 119.99829 * 2 1 4 4 N 1.30237 * 124.74781 * 0.02813 * 3 2 1 5 5 C 1.30872 * 117.26110 * 180.02562 * 4 3 2 6 6 C 1.36712 * 114.03496 * 359.97438 * 5 4 3 7 7 C 1.46221 * 126.10979 * 180.02562 * 6 5 4 8 8 O 1.21748 * 120.00110 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99526 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00025 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47418 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47008 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46823 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00125 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99816 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99890 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99843 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.47077 * 90.00202 * 17 15 13 19 19 H 1.48507 * 109.46831 * 210.00105 * 17 15 13 20 20 H 1.48499 * 109.47240 * 329.99816 * 17 15 13 21 21 S 1.70923 * 124.74737 * 179.72426 * 3 2 1 22 22 H 1.08994 * 109.47444 * 299.99713 * 1 2 3 23 23 H 1.08997 * 109.47066 * 59.99983 * 1 2 3 24 24 H 1.09005 * 109.47054 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00746 * 179.97438 * 2 1 3 26 26 H 1.08002 * 122.98339 * 179.97438 * 5 4 3 27 27 H 0.97005 * 120.00454 * 359.97438 * 9 7 6 28 28 H 1.09003 * 109.47162 * 300.00293 * 10 9 7 29 29 H 1.08999 * 109.47209 * 59.99564 * 10 9 7 30 30 H 1.08998 * 109.47241 * 299.99770 * 11 10 9 31 31 H 1.09007 * 109.47172 * 59.99873 * 11 10 9 32 32 H 1.08995 * 109.47380 * 299.99627 * 12 11 10 33 33 H 1.08999 * 109.46885 * 60.00665 * 12 11 10 34 34 H 0.96997 * 119.99601 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.1938 0.0000 4 7 1.5985 2.3717 0.0005 5 6 2.3950 3.4102 -0.0001 6 6 3.7246 3.0922 -0.0006 7 6 4.8375 4.0407 -0.0008 8 8 4.6169 5.2380 -0.0010 9 7 6.1074 3.5893 -0.0009 10 6 7.2225 4.5395 -0.0005 11 6 8.5463 3.7725 -0.0013 12 6 9.7108 4.7649 -0.0016 13 6 11.0147 4.0093 -0.0030 14 1 11.0130 2.9293 -0.0032 15 6 12.2098 4.6968 -0.0029 16 7 12.2119 6.0119 -0.0011 17 14 13.8261 3.7602 -0.0039 18 1 14.2539 3.5129 -1.4042 19 1 14.8625 4.5607 0.6963 20 1 13.6466 2.4625 0.6954 21 16 3.8575 1.3353 0.0068 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9501 -0.8400 0.0004 26 1 2.0339 4.4280 -0.0001 27 1 6.2832 2.6353 -0.0004 28 1 7.1658 5.1666 -0.8903 29 1 7.1657 5.1661 0.8896 30 1 8.6032 3.1452 0.8883 31 1 8.6028 3.1462 -0.8918 32 1 9.6537 5.3918 -0.8914 33 1 9.6544 5.3913 0.8886 34 1 13.0527 6.4955 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179213732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:42 Heat of formation + Delta-G solvation = -3.070326 kcal Electronic energy + Delta-G solvation = -17040.582804 eV Core-core repulsion = 14099.813939 eV Total energy + Delta-G solvation = -2940.768864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13843 -39.06426 -36.18798 -35.34612 -33.31057 -31.38310 -29.90774 -27.73150 -26.64708 -24.61972 -23.18190 -21.34399 -20.66674 -19.64783 -19.26157 -17.06235 -16.84932 -16.23199 -15.69104 -15.37780 -15.14044 -14.99257 -14.46433 -14.25105 -13.99669 -13.46592 -13.39415 -12.75081 -12.28504 -11.89026 -11.73106 -11.67464 -10.90600 -10.73136 -10.66323 -10.59555 -10.21228 -9.86197 -9.85945 -9.61549 -9.39320 -9.11458 -8.80965 -8.36537 -8.06663 -6.01124 -4.04180 0.33790 0.70613 1.41565 2.46742 2.73365 3.31266 3.34978 3.37246 3.39144 3.42787 4.30429 4.44878 4.68851 5.01295 5.05333 5.22035 5.33429 5.34652 5.71198 5.75427 5.78994 6.17161 6.34471 6.46099 6.55658 6.60632 6.82853 7.00416 7.55892 7.64402 7.69649 7.77119 7.97704 8.33667 8.39557 9.02445 9.59907 11.10196 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.041287 B = 0.002966 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.022412 B = 9437.367286 C =10084.335273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.691 5.691 3 C 0.320 3.680 4 N -0.551 5.551 5 C 0.170 3.830 6 C -0.332 4.332 7 C 0.597 3.403 8 O -0.537 6.537 9 N -0.722 5.722 10 C 0.117 3.883 11 C -0.121 4.121 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 S 0.133 5.867 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.417 0.583 26 H 0.189 0.811 27 H 0.394 0.606 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 -14.498 0.016 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.329 5.329 3 C -0.049 4.049 4 N -0.276 5.276 5 C 0.012 3.988 6 C -0.458 4.458 7 C 0.382 3.618 8 O -0.416 6.416 9 N -0.372 5.372 10 C -0.005 4.005 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 S 0.383 5.617 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.254 0.746 26 H 0.206 0.794 27 H 0.228 0.772 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.529 -14.201 0.030 26.631 hybrid contribution 0.868 -0.430 -0.017 0.969 sum -21.661 -14.631 0.014 26.140 Atomic orbital electron populations 1.21639 0.77760 1.02393 1.02798 1.43663 1.07018 1.03009 1.79252 1.23874 0.93499 0.90687 0.96855 1.66226 1.37736 0.96380 1.27294 1.22095 0.86532 0.98266 0.91900 1.25399 0.98912 0.94390 1.27099 1.16590 0.81633 0.86952 0.76606 1.90842 1.84508 1.15120 1.51168 1.46107 1.05697 1.10538 1.74897 1.21693 0.84747 0.91782 1.02284 1.21903 0.93330 0.99800 1.00914 1.19032 0.90771 0.93852 0.97722 1.21202 0.90937 0.92989 1.50927 0.92649 1.25033 0.99299 0.94862 0.95296 1.69966 1.26634 1.06104 1.50553 0.86579 0.83429 0.79805 0.78084 1.20664 1.21209 1.19906 1.83905 1.02301 1.03227 1.72257 0.91902 0.91904 0.90317 0.74584 0.79443 0.77221 0.91463 0.91463 0.92697 0.92696 0.96209 0.96200 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 10.95 59.85 0.66 1.13 16 2 N -0.69 -4.28 5.84 -69.21 -0.40 -4.69 16 3 C 0.32 3.09 8.05 -87.97 -0.71 2.38 16 4 N -0.55 -6.48 10.06 -14.76 -0.15 -6.63 16 5 C 0.17 2.13 11.14 -18.51 -0.21 1.93 16 6 C -0.33 -4.37 6.50 -36.93 -0.24 -4.61 16 7 C 0.60 9.69 7.77 -13.06 -0.10 9.58 16 8 O -0.54 -10.53 16.87 5.15 0.09 -10.44 16 9 N -0.72 -11.18 5.55 -61.76 -0.34 -11.52 16 10 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 11 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 S 0.13 1.28 22.33 -107.50 -2.40 -1.12 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.42 1.45 8.95 -40.82 -0.37 1.09 16 26 H 0.19 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.39 5.16 7.64 -40.82 -0.31 4.85 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -33.93 313.66 -8.53 -42.46 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.45 Total: -0.15 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.31 Total: -2.98 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.16 Total: -48.99 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.40 Total: -1.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.93 -8.53 -42.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179213732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.387 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds