Wall clock time and date at job start Mon Mar 30 2020 04:56:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37845 * 119.99829 * 2 1
4 4 N 1.30237 * 124.74781 * 0.02813 * 3 2 1
5 5 C 1.30872 * 117.26110 * 180.02562 * 4 3 2
6 6 C 1.36712 * 114.03496 * 359.97438 * 5 4 3
7 7 C 1.46221 * 126.10979 * 180.02562 * 6 5 4
8 8 O 1.21748 * 120.00110 * 359.97438 * 7 6 5
9 9 N 1.34776 * 119.99526 * 179.97438 * 7 6 5
10 10 C 1.46503 * 120.00025 * 180.02562 * 9 7 6
11 11 C 1.52995 * 109.47418 * 180.02562 * 10 9 7
12 12 C 1.53005 * 109.47008 * 179.97438 * 11 10 9
13 13 C 1.50704 * 109.46823 * 180.02562 * 12 11 10
14 14 H 1.07998 * 120.00125 * 359.97438 * 13 12 11
15 15 C 1.37878 * 119.99816 * 180.02562 * 13 12 11
16 16 N 1.31514 * 119.99890 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 119.99843 * 179.97438 * 15 13 12
18 18 H 1.48491 * 109.47077 * 90.00202 * 17 15 13
19 19 H 1.48507 * 109.46831 * 210.00105 * 17 15 13
20 20 H 1.48499 * 109.47240 * 329.99816 * 17 15 13
21 21 S 1.70923 * 124.74737 * 179.72426 * 3 2 1
22 22 H 1.08994 * 109.47444 * 299.99713 * 1 2 3
23 23 H 1.08997 * 109.47066 * 59.99983 * 1 2 3
24 24 H 1.09005 * 109.47054 * 179.97438 * 1 2 3
25 25 H 0.97000 * 120.00746 * 179.97438 * 2 1 3
26 26 H 1.08002 * 122.98339 * 179.97438 * 5 4 3
27 27 H 0.97005 * 120.00454 * 359.97438 * 9 7 6
28 28 H 1.09003 * 109.47162 * 300.00293 * 10 9 7
29 29 H 1.08999 * 109.47209 * 59.99564 * 10 9 7
30 30 H 1.08998 * 109.47241 * 299.99770 * 11 10 9
31 31 H 1.09007 * 109.47172 * 59.99873 * 11 10 9
32 32 H 1.08995 * 109.47380 * 299.99627 * 12 11 10
33 33 H 1.08999 * 109.46885 * 60.00665 * 12 11 10
34 34 H 0.96997 * 119.99601 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1542 1.1938 0.0000
4 7 1.5985 2.3717 0.0005
5 6 2.3950 3.4102 -0.0001
6 6 3.7246 3.0922 -0.0006
7 6 4.8375 4.0407 -0.0008
8 8 4.6169 5.2380 -0.0010
9 7 6.1074 3.5893 -0.0009
10 6 7.2225 4.5395 -0.0005
11 6 8.5463 3.7725 -0.0013
12 6 9.7108 4.7649 -0.0016
13 6 11.0147 4.0093 -0.0030
14 1 11.0130 2.9293 -0.0032
15 6 12.2098 4.6968 -0.0029
16 7 12.2119 6.0119 -0.0011
17 14 13.8261 3.7602 -0.0039
18 1 14.2539 3.5129 -1.4042
19 1 14.8625 4.5607 0.6963
20 1 13.6466 2.4625 0.6954
21 16 3.8575 1.3353 0.0068
22 1 -0.3634 0.5137 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.9501 -0.8400 0.0004
26 1 2.0339 4.4280 -0.0001
27 1 6.2832 2.6353 -0.0004
28 1 7.1658 5.1666 -0.8903
29 1 7.1657 5.1661 0.8896
30 1 8.6032 3.1452 0.8883
31 1 8.6028 3.1462 -0.8918
32 1 9.6537 5.3918 -0.8914
33 1 9.6544 5.3913 0.8886
34 1 13.0527 6.4955 -0.0007
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000179213732.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:42
Heat of formation + Delta-G solvation = -27.822014 kcal
Electronic energy + Delta-G solvation = -17041.656117 eV
Core-core repulsion = 14099.813939 eV
Total energy + Delta-G solvation = -2941.842178 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.094 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.12491 -40.21297 -37.05895 -36.72826 -35.20582 -33.14877 -30.96665 -28.75589
-28.01751 -25.71302 -24.70250 -22.54422 -22.35260 -20.52665 -20.27696 -18.56401
-18.02869 -17.64294 -16.82537 -16.61859 -16.32796 -16.20710 -15.76751 -15.38265
-15.33349 -14.58368 -14.24774 -14.19630 -13.76689 -13.50680 -13.08509 -12.74722
-12.59895 -12.55599 -12.36486 -11.68585 -11.64958 -11.40054 -11.30706 -11.15817
-10.72199 -10.54450 -10.45893 -10.15370 -8.82201 -8.18463 -6.29950 -0.55853
-0.07535 0.54594 1.42580 1.44108 1.49956 1.55019 2.06156 2.21006
2.21132 2.43636 3.15321 3.52839 3.89006 4.16161 4.20673 4.32397
4.42187 4.54297 4.64825 4.84600 4.93689 4.95933 4.99539 5.16290
5.36372 5.52452 5.65019 5.71124 5.84891 6.04228 6.22932 6.44099
6.83614 6.87377 7.11196 7.39539 8.93720
Molecular weight = 269.09amu
Principal moments of inertia in cm(-1)
A = 0.041287 B = 0.002966 C = 0.002776
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 678.022412 B = 9437.367286 C =10084.335273
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.672 5.672
3 C 0.321 3.679
4 N -0.573 5.573
5 C 0.180 3.820
6 C -0.371 4.371
7 C 0.597 3.403
8 O -0.582 6.582
9 N -0.714 5.714
10 C 0.130 3.870
11 C -0.103 4.103
12 C 0.024 3.976
13 C -0.541 4.541
14 H 0.067 0.933
15 C -0.004 4.004
16 N -0.935 5.935
17 Si 0.968 3.032
18 H -0.273 1.273
19 H -0.285 1.285
20 H -0.260 1.260
21 S 0.183 5.817
22 H 0.055 0.945
23 H 0.055 0.945
24 H 0.115 0.885
25 H 0.433 0.567
26 H 0.187 0.813
27 H 0.408 0.592
28 H 0.054 0.946
29 H 0.054 0.946
30 H 0.068 0.932
31 H 0.068 0.932
32 H -0.007 1.007
33 H -0.007 1.007
34 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.140 -17.933 0.016 29.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.310 5.310
3 C -0.049 4.049
4 N -0.299 5.299
5 C 0.019 3.981
6 C -0.498 4.498
7 C 0.385 3.615
8 O -0.464 6.464
9 N -0.365 5.365
10 C 0.007 3.993
11 C -0.140 4.140
12 C -0.014 4.014
13 C -0.579 4.579
14 H 0.085 0.915
15 C -0.202 4.202
16 N -0.576 5.576
17 Si 0.792 3.208
18 H -0.198 1.198
19 H -0.211 1.211
20 H -0.184 1.184
21 S 0.433 5.567
22 H 0.074 0.926
23 H 0.074 0.926
24 H 0.134 0.866
25 H 0.273 0.727
26 H 0.204 0.796
27 H 0.244 0.756
28 H 0.073 0.927
29 H 0.073 0.927
30 H 0.087 0.913
31 H 0.087 0.913
32 H 0.012 0.988
33 H 0.012 0.988
34 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -23.122 -17.746 0.030 29.147
hybrid contribution 0.890 0.535 -0.018 1.039
sum -22.232 -17.211 0.012 28.115
Atomic orbital electron populations
1.21831 0.76533 1.04650 1.02040 1.43930 1.07893 1.02510 1.76689
1.24192 0.94139 0.91245 0.95285 1.66282 1.37842 0.96827 1.28967
1.22179 0.86576 0.98756 0.90543 1.25054 0.97907 0.96416 1.30387
1.16935 0.82166 0.86927 0.75424 1.90807 1.85165 1.17202 1.53209
1.45856 1.04943 1.10785 1.74877 1.21311 0.85062 0.91824 1.01151
1.21616 0.91724 0.98517 1.02181 1.18942 0.92845 0.94417 0.95185
1.21677 0.91963 0.93765 1.50446 0.91491 1.26035 1.03578 0.95767
0.94799 1.70115 1.27737 1.08009 1.51692 0.85403 0.78229 0.78685
0.78451 1.19813 1.21077 1.18379 1.83596 1.01456 0.99649 1.71988
0.92641 0.92645 0.86614 0.72735 0.79607 0.75591 0.92748 0.92743
0.91322 0.91310 0.98847 0.98835 0.92819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.62 10.95 127.77 1.40 2.02 16
2 N -0.67 -6.18 5.84 -372.88 -2.18 -8.36 16
3 C 0.32 5.46 8.05 179.42 1.44 6.90 16
4 N -0.57 -12.75 10.06 -200.63 -2.02 -14.77 16
5 C 0.18 4.46 11.14 84.48 0.94 5.40 16
6 C -0.37 -9.60 6.50 23.99 0.16 -9.44 16
7 C 0.60 19.61 7.77 86.32 0.67 20.29 16
8 O -0.58 -23.66 16.87 -4.50 -0.08 -23.74 16
9 N -0.71 -21.85 5.55 -467.51 -2.60 -24.45 16
10 C 0.13 4.79 5.67 86.38 0.49 5.28 16
11 C -0.10 -4.02 5.27 30.59 0.16 -3.86 16
12 C 0.02 1.25 4.97 29.85 0.15 1.40 16
13 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16
14 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16
15 C 0.00 -0.24 5.46 84.65 0.46 0.22 16
16 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16
17 Si 0.97 43.83 29.54 68.60 2.03 45.85 16
18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
19 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16
20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16
21 S 0.18 3.13 22.33 -56.49 -1.26 1.87 16
22 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
23 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
24 H 0.12 -0.06 8.14 -2.38 -0.02 -0.08 16
25 H 0.43 1.33 8.95 -92.71 -0.83 0.50 16
26 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16
27 H 0.41 10.06 7.64 -92.70 -0.71 9.36 16
28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16
29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16
30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
31 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16
32 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16
33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16
34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16
Total: -1.00 -74.56 313.66 -0.12 -74.68
By element:
Atomic # 1 Polarization: 8.24 SS G_CDS: -0.41 Total: 7.83 kcal
Atomic # 6 Polarization: -7.92 SS G_CDS: 6.11 Total: -1.81 kcal
Atomic # 7 Polarization: -98.17 SS G_CDS: -6.51 Total: -104.68 kcal
Atomic # 8 Polarization: -23.66 SS G_CDS: -0.08 Total: -23.74 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal
Atomic # 16 Polarization: 3.13 SS G_CDS: -1.26 Total: 1.87 kcal
Total: -74.56 -0.12 -74.68 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000179213732.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.855 kcal
(2) G-P(sol) polarization free energy of solvation -74.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds