Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 H 1.09005 * 109.47297 * 55.00077 * 3 2 1 5 5 C 1.50705 * 109.47145 * 174.99966 * 3 2 1 6 6 H 1.08000 * 120.00020 * 120.00453 * 5 3 2 7 7 C 1.37876 * 119.99549 * 299.99726 * 5 3 2 8 8 N 1.31511 * 120.00635 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99679 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47296 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47331 * 120.00311 * 9 7 5 12 12 H 1.48505 * 109.47328 * 240.00192 * 9 7 5 13 13 N 1.46496 * 109.47309 * 294.99835 * 3 2 1 14 14 C 1.34776 * 120.00203 * 85.00181 * 13 3 2 15 15 O 1.21284 * 119.99883 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00298 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47224 * 180.02562 * 16 14 13 18 18 H 1.08993 * 110.65908 * 57.90712 * 17 16 14 19 19 N 1.47319 * 110.59475 * 294.99567 * 17 16 14 20 20 C 1.34526 * 106.61635 * 241.47348 * 19 17 16 21 21 O 1.21543 * 123.76817 * 180.02562 * 20 19 17 22 22 N 1.33787 * 112.45950 * 0.26762 * 20 19 17 23 23 C 1.34769 * 111.64565 * 359.53813 * 22 20 19 24 24 O 1.21233 * 127.15754 * 180.14345 * 23 22 20 25 25 H 1.09005 * 109.47032 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47118 * 299.99955 * 1 2 3 27 27 H 1.08999 * 109.47082 * 60.00212 * 1 2 3 28 28 H 1.08998 * 109.47118 * 240.00045 * 2 1 3 29 29 H 1.08999 * 109.47082 * 119.99788 * 2 1 3 30 30 H 0.96997 * 120.00710 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99858 * 265.00098 * 13 3 2 32 32 H 1.08990 * 109.47187 * 59.99283 * 16 14 13 33 33 H 1.09006 * 109.46334 * 299.99492 * 16 14 13 34 34 H 0.96998 * 126.68994 * 61.45715 * 19 17 16 35 35 H 0.97006 * 124.18214 * 179.69195 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0048 0.8815 1.3819 10 1 6.5986 1.5464 0.1943 11 1 6.3988 1.6169 2.6104 12 1 6.4971 -0.5173 1.4631 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3397 2.6319 -0.4345 16 6 0.0362 3.3377 -2.6549 17 6 -1.3825 3.8946 -2.5211 18 1 -1.4437 4.5950 -1.6883 19 7 -2.3547 2.8009 -2.3511 20 6 -3.1951 2.8667 -3.3995 21 8 -4.1249 2.1025 -3.5690 22 7 -2.8900 3.8642 -4.2372 23 6 -1.8178 4.5608 -3.8113 24 8 -1.3047 5.5175 -4.3507 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 2.2719 2.1232 -1.9978 32 1 0.0673 2.6131 -3.4685 33 1 0.7276 4.1530 -2.8678 34 1 -2.3831 2.1584 -1.6249 35 1 -3.3812 4.0630 -5.0497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183972493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = -93.793934 kcal Electronic energy + Delta-G solvation = -20880.702052 eV Core-core repulsion = 17493.246246 eV Total energy + Delta-G solvation = -3387.455806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.49029 -39.24595 -38.75429 -36.36833 -35.26308 -34.01172 -32.55878 -31.45586 -30.34486 -27.24498 -25.53335 -23.14947 -22.77836 -21.68214 -20.40410 -19.48765 -18.50510 -17.53853 -16.90048 -16.60444 -16.16858 -15.82037 -15.40995 -15.38519 -14.94290 -14.42072 -14.20226 -14.02918 -13.36775 -12.88763 -12.75814 -12.47575 -11.80722 -11.46890 -11.35096 -11.18822 -11.03720 -10.91526 -10.58090 -10.46786 -10.39325 -10.27874 -9.73631 -9.57092 -9.23277 -9.13023 -8.58890 -7.98455 -6.20208 -4.30024 1.37860 2.30244 2.86182 3.01193 3.14632 3.18984 3.27529 3.29432 3.70475 4.06373 4.30639 4.46247 4.75879 5.11625 5.17401 5.40070 5.42969 5.53439 5.81359 6.29935 6.33625 6.54431 6.71319 6.82313 6.93096 7.07866 7.18559 7.24397 7.30323 7.51530 7.62230 7.79742 8.04380 8.09015 8.49719 8.66446 8.94128 9.37619 10.85034 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033836 B = 0.004429 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.311425 B = 6320.407247 C = 6922.942055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.505 3.495 15 O -0.551 6.551 16 C -0.147 4.147 17 C 0.111 3.889 18 H 0.138 0.862 19 N -0.705 5.705 20 C 0.699 3.301 21 O -0.550 6.550 22 N -0.681 5.681 23 C 0.530 3.470 24 O -0.468 6.468 25 H 0.023 0.977 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.450 0.550 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 5.600 -10.301 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.289 3.711 15 O -0.431 6.431 16 C -0.188 4.188 17 C 0.002 3.998 18 H 0.155 0.845 19 N -0.371 5.371 20 C 0.398 3.602 21 O -0.424 6.424 22 N -0.352 5.352 23 C 0.315 3.685 24 O -0.337 6.337 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.223 0.777 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.297 0.703 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.789 5.565 -9.721 13.643 hybrid contribution 1.139 -0.219 -0.325 1.205 sum -6.650 5.346 -10.046 13.180 Atomic orbital electron populations 1.21840 0.98374 0.98210 1.00995 1.21941 0.92614 0.99764 1.02406 1.18838 0.94352 0.89200 0.80793 0.93104 1.21257 0.90658 1.39184 1.06368 0.91999 1.24877 0.98652 0.94711 0.95356 1.69888 1.35125 1.37492 1.09360 0.86406 0.84790 0.77821 0.78162 1.19728 1.20850 1.20866 1.46506 1.14380 1.55225 1.18753 1.19989 0.83185 0.79583 0.88306 1.90669 1.51437 1.60474 1.40498 1.21941 0.94598 1.02878 0.99426 1.21769 0.90362 0.90542 0.97151 0.84466 1.45730 1.30139 1.34857 1.26378 1.15951 0.82828 0.80825 0.80563 1.91050 1.31005 1.44114 1.76247 1.44329 1.32103 1.31614 1.27143 1.20859 0.79285 0.82245 0.86102 1.90846 1.57252 1.24244 1.61400 0.95758 0.93028 0.94486 0.95024 0.88218 0.92543 0.77736 0.88322 0.86653 0.70278 0.72727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.51 37.16 0.32 -2.44 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.04 16 3 C 0.27 6.19 2.24 -69.08 -0.15 6.04 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.30 8.73 -34.44 -0.30 -13.60 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.65 11.29 55.43 0.63 -23.03 16 9 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -12.51 5.02 -54.93 -0.28 -12.79 16 14 C 0.51 7.98 6.28 -10.98 -0.07 7.91 16 15 O -0.55 -10.16 11.99 5.55 0.07 -10.09 16 16 C -0.15 -1.60 5.48 -27.88 -0.15 -1.75 16 17 C 0.11 1.17 3.18 -68.20 -0.22 0.95 16 18 H 0.14 1.39 8.07 -51.93 -0.42 0.97 16 19 N -0.70 -8.17 5.85 -59.19 -0.35 -8.51 16 20 C 0.70 8.45 8.99 -88.02 -0.79 7.65 16 21 O -0.55 -8.56 18.04 5.33 0.10 -8.47 16 22 N -0.68 -6.36 5.70 -15.79 -0.09 -6.45 16 23 C 0.53 5.38 8.14 -10.56 -0.09 5.30 16 24 O -0.47 -5.77 18.02 5.60 0.10 -5.67 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 27 H 0.04 0.69 5.64 -51.93 -0.29 0.40 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.39 6.03 8.54 -40.82 -0.35 5.68 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.45 5.70 8.00 -40.82 -0.33 5.37 16 35 H 0.43 3.04 8.96 -40.82 -0.37 2.68 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -30.14 298.30 -6.14 -36.28 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.10 Total: 10.79 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -1.70 Total: 8.65 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.09 Total: -50.77 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.26 Total: -24.24 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.14 -6.14 -36.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183972493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.512 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds