Wall clock time and date at job start Mon Mar 30 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 H 1.09005 * 109.47297 * 55.00077 * 3 2 1 5 5 C 1.50705 * 109.47145 * 174.99966 * 3 2 1 6 6 H 1.08000 * 120.00020 * 120.00453 * 5 3 2 7 7 C 1.37876 * 119.99549 * 299.99726 * 5 3 2 8 8 N 1.31511 * 120.00635 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99679 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47296 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47331 * 120.00311 * 9 7 5 12 12 H 1.48505 * 109.47328 * 240.00192 * 9 7 5 13 13 N 1.46496 * 109.47309 * 294.99835 * 3 2 1 14 14 C 1.34776 * 120.00203 * 85.00181 * 13 3 2 15 15 O 1.21284 * 119.99883 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00298 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47224 * 180.02562 * 16 14 13 18 18 H 1.08993 * 110.65908 * 57.90712 * 17 16 14 19 19 N 1.47319 * 110.59475 * 294.99567 * 17 16 14 20 20 C 1.34526 * 106.61635 * 241.47348 * 19 17 16 21 21 O 1.21543 * 123.76817 * 180.02562 * 20 19 17 22 22 N 1.33787 * 112.45950 * 0.26762 * 20 19 17 23 23 C 1.34769 * 111.64565 * 359.53813 * 22 20 19 24 24 O 1.21233 * 127.15754 * 180.14345 * 23 22 20 25 25 H 1.09005 * 109.47032 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47118 * 299.99955 * 1 2 3 27 27 H 1.08999 * 109.47082 * 60.00212 * 1 2 3 28 28 H 1.08998 * 109.47118 * 240.00045 * 2 1 3 29 29 H 1.08999 * 109.47082 * 119.99788 * 2 1 3 30 30 H 0.96997 * 120.00710 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99858 * 265.00098 * 13 3 2 32 32 H 1.08990 * 109.47187 * 59.99283 * 16 14 13 33 33 H 1.09006 * 109.46334 * 299.99492 * 16 14 13 34 34 H 0.96998 * 126.68994 * 61.45715 * 19 17 16 35 35 H 0.97006 * 124.18214 * 179.69195 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1431 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0048 0.8815 1.3819 10 1 6.5986 1.5464 0.1943 11 1 6.3988 1.6169 2.6104 12 1 6.4971 -0.5173 1.4631 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3397 2.6319 -0.4345 16 6 0.0362 3.3377 -2.6549 17 6 -1.3825 3.8946 -2.5211 18 1 -1.4437 4.5950 -1.6883 19 7 -2.3547 2.8009 -2.3511 20 6 -3.1951 2.8667 -3.3995 21 8 -4.1249 2.1025 -3.5690 22 7 -2.8900 3.8642 -4.2372 23 6 -1.8178 4.5608 -3.8113 24 8 -1.3047 5.5175 -4.3507 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0617 2.9496 31 1 2.2719 2.1232 -1.9978 32 1 0.0673 2.6131 -3.4685 33 1 0.7276 4.1530 -2.8678 34 1 -2.3831 2.1584 -1.6249 35 1 -3.3812 4.0630 -5.0497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183972493.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:33 Heat of formation + Delta-G solvation = -118.825081 kcal Electronic energy + Delta-G solvation = -20881.787484 eV Core-core repulsion = 17493.246246 eV Total energy + Delta-G solvation = -3388.541238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.40946 -40.61162 -39.71784 -37.46998 -36.81880 -34.96058 -34.27068 -32.99163 -31.54993 -28.96034 -26.66532 -24.85253 -23.74046 -22.70205 -21.84112 -21.03490 -19.45004 -18.94623 -17.95868 -17.64695 -17.48428 -17.02400 -16.83636 -16.54780 -16.23459 -15.84666 -15.37399 -15.14136 -14.68830 -14.49723 -14.09129 -13.73418 -13.43609 -13.13900 -12.84956 -12.76601 -12.63373 -12.22006 -12.11597 -11.99099 -11.53364 -11.49777 -11.43924 -10.99181 -10.64863 -10.52224 -10.46677 -9.56714 -8.13726 -6.29841 0.49322 1.42837 1.45074 1.47891 1.57916 1.87778 1.93803 2.08899 2.39079 2.64651 3.05435 3.16903 3.51732 3.91257 4.10288 4.41835 4.54266 4.57589 4.63649 4.68871 4.82522 5.08047 5.12766 5.33167 5.48648 5.61452 5.66181 5.76620 5.85284 5.90411 5.96661 6.22355 6.34891 6.79746 7.02782 7.10499 7.37739 7.61959 8.91239 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.033836 B = 0.004429 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.311425 B = 6320.407247 C = 6922.942055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.503 3.497 15 O -0.578 6.578 16 C -0.132 4.132 17 C 0.112 3.888 18 H 0.144 0.856 19 N -0.705 5.705 20 C 0.704 3.296 21 O -0.586 6.586 22 N -0.665 5.665 23 C 0.547 3.453 24 O -0.483 6.483 25 H 0.038 0.962 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.067 0.933 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.445 0.555 35 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 6.395 -12.207 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.290 3.710 15 O -0.460 6.460 16 C -0.173 4.173 17 C 0.002 3.998 18 H 0.162 0.838 19 N -0.369 5.369 20 C 0.404 3.596 21 O -0.463 6.463 22 N -0.336 5.336 23 C 0.332 3.668 24 O -0.353 6.353 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.239 0.761 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.291 0.709 35 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.276 6.398 -11.683 15.177 hybrid contribution 0.937 -0.429 0.285 1.069 sum -6.339 5.968 -11.398 14.343 Atomic orbital electron populations 1.21683 0.96619 0.99068 1.00663 1.21789 0.94108 0.99294 1.01020 1.18338 0.93324 0.89123 0.81681 0.97756 1.21648 0.91835 1.38490 1.06413 0.91054 1.25691 1.02790 0.94587 0.95244 1.70038 1.36791 1.38547 1.09913 0.85419 0.79844 0.77625 0.78163 1.18448 1.21212 1.20854 1.46238 1.15739 1.55729 1.17524 1.20757 0.81923 0.78660 0.89669 1.90671 1.52024 1.61125 1.42136 1.21865 0.95045 1.03723 0.96664 1.21839 0.89910 0.90297 0.97727 0.83847 1.45758 1.30251 1.34864 1.26027 1.15949 0.82264 0.80734 0.80675 1.91033 1.32550 1.45605 1.77074 1.44110 1.31825 1.30542 1.27121 1.20547 0.79017 0.81714 0.85476 1.90863 1.57772 1.24919 1.61740 0.94249 0.95086 0.92981 0.94389 0.91469 0.92764 0.76089 0.86131 0.84106 0.70854 0.71270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 8.51 71.98 0.61 -4.33 16 2 C -0.12 -5.60 5.45 30.59 0.17 -5.43 16 3 C 0.28 12.93 2.24 44.25 0.10 13.03 16 4 H 0.00 0.25 7.58 -2.38 -0.02 0.23 16 5 C -0.55 -26.97 8.73 25.60 0.22 -26.74 16 6 H 0.07 3.30 7.74 -2.91 -0.02 3.28 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -50.31 11.29 21.45 0.24 -50.06 16 9 Si 0.96 40.52 29.54 68.60 2.03 42.55 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.70 -24.21 5.02 -446.09 -2.24 -26.45 16 14 C 0.50 15.07 6.28 87.66 0.55 15.62 16 15 O -0.58 -21.02 11.99 -3.04 -0.04 -21.05 16 16 C -0.13 -2.45 5.48 29.85 0.16 -2.28 16 17 C 0.11 2.05 3.18 44.37 0.14 2.19 16 18 H 0.14 2.56 8.07 -2.39 -0.02 2.54 16 19 N -0.70 -15.08 5.85 -459.61 -2.69 -17.77 16 20 C 0.70 15.77 8.99 179.44 1.61 17.38 16 21 O -0.59 -17.62 18.04 -3.85 -0.07 -17.69 16 22 N -0.66 -10.77 5.70 -441.12 -2.52 -13.29 16 23 C 0.55 9.51 8.14 87.94 0.72 10.22 16 24 O -0.48 -10.43 18.02 -2.88 -0.05 -10.48 16 25 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.03 1.34 7.85 -2.39 -0.02 1.33 16 27 H 0.05 1.90 5.64 -2.39 -0.01 1.89 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 3.53 5.95 -2.39 -0.01 3.51 16 30 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.40 11.60 8.54 -92.70 -0.79 10.80 16 32 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.14 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.45 10.79 8.00 -92.71 -0.74 10.04 16 35 H 0.44 5.17 8.96 -92.70 -0.83 4.34 16 Total: -1.00 -65.77 298.30 -1.80 -67.57 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -1.20 Total: 25.72 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 4.74 Total: 20.96 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -7.20 Total: -107.57 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.16 Total: -49.23 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -65.77 -1.80 -67.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183972493.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.260 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds