Wall clock time and date at job start Mon Mar 30 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46773 * 90.00331 * 9 7 5 11 11 H 1.48503 * 109.47086 * 209.99611 * 9 7 5 12 12 H 1.48499 * 109.47347 * 330.00078 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 H 1.09008 * 110.53430 * 52.16447 * 17 16 14 19 19 N 1.47316 * 110.59687 * 289.17542 * 17 16 14 20 20 C 1.34531 * 106.61433 * 241.47285 * 19 17 16 21 21 O 1.21533 * 123.76910 * 180.02562 * 20 19 17 22 22 N 1.33788 * 112.45907 * 0.02562 * 20 19 17 23 23 C 1.34766 * 111.64404 * 359.97438 * 22 20 19 24 24 O 1.21240 * 127.15854 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 26 26 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 27 27 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 29 29 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 30 30 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 33 33 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 34 34 H 0.96992 * 126.69760 * 61.44843 * 19 17 16 35 35 H 0.97002 * 124.17874 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5548 -0.3504 -0.7604 11 1 6.3829 0.9222 -2.8175 12 1 6.5570 2.0737 -0.6904 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 6 -1.3779 3.9047 2.5172 18 1 -2.0640 3.1313 2.1717 19 7 -1.3925 5.0605 1.6040 20 6 -1.8120 6.1156 2.3255 21 8 -1.9396 7.2361 1.8725 22 7 -2.0731 5.7936 3.5976 23 6 -1.8490 4.4861 3.8354 24 8 -1.9935 3.8975 4.8854 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0611 -2.9500 31 1 2.2721 2.1230 1.9977 32 1 0.0674 2.6216 3.4687 33 1 0.7334 4.1570 2.8627 34 1 -1.1472 5.0609 0.6656 35 1 -2.3859 6.4232 4.2659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183972509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:37 Heat of formation + Delta-G solvation = -93.904643 kcal Electronic energy + Delta-G solvation = -20782.880960 eV Core-core repulsion = 17395.420353 eV Total energy + Delta-G solvation = -3387.460607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49648 -39.24216 -38.75894 -36.38326 -35.26028 -34.03723 -32.54826 -31.42094 -30.37865 -27.22370 -25.53806 -23.12447 -22.82498 -21.68025 -20.38460 -19.48126 -18.52060 -17.56131 -16.90320 -16.60312 -16.18275 -15.78435 -15.58892 -15.26747 -14.90716 -14.43158 -14.21878 -14.04746 -13.25877 -13.01068 -12.70974 -12.43732 -11.81724 -11.46391 -11.33415 -11.19405 -11.06226 -10.88767 -10.58940 -10.49742 -10.39043 -10.25017 -9.72701 -9.59748 -9.22775 -9.12853 -8.58395 -7.97893 -6.19820 -4.29734 1.37262 2.29025 2.84970 2.99269 3.15312 3.19833 3.27470 3.28901 3.71099 4.05436 4.30855 4.45610 4.77560 5.11878 5.17083 5.39001 5.43201 5.54468 5.80716 6.31044 6.36174 6.56292 6.69073 6.80200 6.94356 7.09099 7.17745 7.24884 7.31287 7.52115 7.62593 7.80155 8.02533 8.09400 8.50251 8.66577 8.94627 9.37851 10.85343 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.004355 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.571537 B = 6428.431694 C = 6703.885570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.504 3.496 15 O -0.550 6.550 16 C -0.148 4.148 17 C 0.111 3.889 18 H 0.140 0.860 19 N -0.706 5.706 20 C 0.700 3.300 21 O -0.550 6.550 22 N -0.681 5.681 23 C 0.530 3.470 24 O -0.468 6.468 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.449 0.551 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 5.323 10.413 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.288 3.712 15 O -0.430 6.430 16 C -0.189 4.189 17 C 0.001 3.999 18 H 0.157 0.843 19 N -0.372 5.372 20 C 0.399 3.601 21 O -0.424 6.424 22 N -0.352 5.352 23 C 0.315 3.685 24 O -0.337 6.337 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.296 0.704 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.904 5.382 9.800 13.693 hybrid contribution 1.311 0.166 0.204 1.337 sum -6.594 5.548 10.004 13.204 Atomic orbital electron populations 1.21835 0.98293 0.98150 1.01117 1.21946 0.92652 0.99753 1.02407 1.18826 0.94302 0.89222 0.80773 0.93154 1.21213 0.90659 1.39282 1.06371 0.92090 1.24873 0.98632 0.94721 0.95337 1.69882 1.35193 1.37432 1.09342 0.86461 0.84812 0.78473 0.77440 1.20519 1.21046 1.19868 1.46504 1.14316 1.55350 1.18738 1.19992 0.83183 0.79551 0.88436 1.90686 1.51323 1.60587 1.40367 1.21954 0.94534 1.02506 0.99932 1.21786 0.99839 0.91289 0.86948 0.84304 1.45666 1.70102 1.07326 1.14084 1.15925 0.78151 0.85142 0.80842 1.91050 1.58024 1.20399 1.72904 1.44324 1.64473 1.13000 1.13374 1.20864 0.75594 0.81974 0.90059 1.90848 1.49054 1.65293 1.28537 0.94334 0.93112 0.95820 0.88252 0.94976 0.92491 0.77752 0.86759 0.88138 0.70446 0.72709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.52 37.16 0.32 -2.46 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.22 2.24 -69.08 -0.15 6.06 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.33 8.73 -34.44 -0.30 -13.63 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.67 11.29 55.43 0.63 -23.05 16 9 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -12.54 5.02 -54.93 -0.28 -12.82 16 14 C 0.50 7.98 6.32 -10.98 -0.07 7.91 16 15 O -0.55 -10.20 12.38 5.55 0.07 -10.13 16 16 C -0.15 -1.61 5.44 -27.88 -0.15 -1.76 16 17 C 0.11 1.16 3.14 -68.21 -0.21 0.95 16 18 H 0.14 1.44 7.89 -51.92 -0.41 1.03 16 19 N -0.71 -8.01 5.96 -59.19 -0.35 -8.37 16 20 C 0.70 8.36 8.99 -88.02 -0.79 7.57 16 21 O -0.55 -8.48 18.04 5.34 0.10 -8.39 16 22 N -0.68 -6.32 5.70 -15.79 -0.09 -6.41 16 23 C 0.53 5.39 8.14 -10.56 -0.09 5.30 16 24 O -0.47 -5.78 18.02 5.59 0.10 -5.68 16 25 H 0.04 0.73 5.65 -51.93 -0.29 0.44 16 26 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 31 H 0.39 6.03 8.54 -40.82 -0.35 5.68 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.45 5.44 8.48 -40.82 -0.35 5.09 16 35 H 0.43 3.02 8.96 -40.82 -0.37 2.66 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -30.26 299.07 -6.14 -36.40 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.11 Total: 10.56 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.69 Total: 8.53 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.09 Total: -50.63 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.27 Total: -24.19 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.26 -6.14 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183972509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.508 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds