Wall clock time and date at job start Mon Mar 30 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46773 * 90.00331 * 9 7 5 11 11 H 1.48503 * 109.47086 * 209.99611 * 9 7 5 12 12 H 1.48499 * 109.47347 * 330.00078 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 H 1.09008 * 110.53430 * 52.16447 * 17 16 14 19 19 N 1.47316 * 110.59687 * 289.17542 * 17 16 14 20 20 C 1.34531 * 106.61433 * 241.47285 * 19 17 16 21 21 O 1.21533 * 123.76910 * 180.02562 * 20 19 17 22 22 N 1.33788 * 112.45907 * 0.02562 * 20 19 17 23 23 C 1.34766 * 111.64404 * 359.97438 * 22 20 19 24 24 O 1.21240 * 127.15854 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 26 26 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 27 27 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 29 29 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 30 30 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 31 31 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 33 33 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 34 34 H 0.96992 * 126.69760 * 61.44843 * 19 17 16 35 35 H 0.97002 * 124.17874 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5548 -0.3504 -0.7604 11 1 6.3829 0.9222 -2.8175 12 1 6.5570 2.0737 -0.6904 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 6 -1.3779 3.9047 2.5172 18 1 -2.0640 3.1313 2.1717 19 7 -1.3925 5.0605 1.6040 20 6 -1.8120 6.1156 2.3255 21 8 -1.9396 7.2361 1.8725 22 7 -2.0731 5.7936 3.5976 23 6 -1.8490 4.4861 3.8354 24 8 -1.9935 3.8975 4.8854 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8292 -0.0611 -2.9500 31 1 2.2721 2.1230 1.9977 32 1 0.0674 2.6216 3.4687 33 1 0.7334 4.1570 2.8627 34 1 -1.1472 5.0609 0.6656 35 1 -2.3859 6.4232 4.2659 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183972509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:37 Heat of formation + Delta-G solvation = -119.134453 kcal Electronic energy + Delta-G solvation = -20783.975007 eV Core-core repulsion = 17395.420353 eV Total energy + Delta-G solvation = -3388.554654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41322 -40.61134 -39.72317 -37.47767 -36.82318 -34.98488 -34.26844 -32.95700 -31.58300 -28.94456 -26.66568 -24.84808 -23.76885 -22.69304 -21.83094 -21.03116 -19.45992 -18.96137 -17.99695 -17.63824 -17.45142 -17.05330 -16.81467 -16.62413 -16.12746 -15.96246 -15.30239 -15.15616 -14.65525 -14.56398 -14.04053 -13.70208 -13.46137 -13.12612 -12.88048 -12.76602 -12.61556 -12.20809 -12.14207 -12.00125 -11.52707 -11.50404 -11.43043 -11.00012 -10.65258 -10.53976 -10.45688 -9.56506 -8.13680 -6.29873 0.48669 1.42069 1.45843 1.47473 1.56432 1.88074 1.92881 2.07341 2.39130 2.65229 3.04293 3.16693 3.50819 3.91668 4.10299 4.41707 4.53548 4.57969 4.65026 4.69437 4.83901 5.07508 5.13971 5.34244 5.49909 5.61809 5.66548 5.74577 5.86002 5.89014 5.96852 6.22791 6.33957 6.79395 7.03049 7.09346 7.37650 7.62212 8.91025 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.004355 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.571537 B = 6428.431694 C = 6703.885570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.704 5.704 14 C 0.503 3.497 15 O -0.578 6.578 16 C -0.133 4.133 17 C 0.112 3.888 18 H 0.144 0.856 19 N -0.706 5.706 20 C 0.705 3.295 21 O -0.586 6.586 22 N -0.664 5.664 23 C 0.546 3.454 24 O -0.482 6.482 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.445 0.555 35 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 5.531 12.496 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.789 3.211 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.459 6.459 16 C -0.173 4.173 17 C 0.002 3.998 18 H 0.162 0.838 19 N -0.369 5.369 20 C 0.405 3.595 21 O -0.462 6.462 22 N -0.336 5.336 23 C 0.332 3.668 24 O -0.353 6.353 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.239 0.761 32 H 0.159 0.841 33 H 0.138 0.862 34 H 0.291 0.709 35 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.626 5.599 11.946 15.239 hybrid contribution 1.169 0.113 -0.451 1.258 sum -6.457 5.711 11.495 14.368 Atomic orbital electron populations 1.21676 0.96579 0.99097 1.00642 1.21796 0.94111 0.99241 1.01103 1.18331 0.93266 0.89191 0.81649 0.97846 1.21607 0.91848 1.38602 1.06426 0.91154 1.25683 1.02757 0.94595 0.95220 1.70035 1.36826 1.38487 1.09871 0.85474 0.79867 0.78752 0.77000 1.19911 1.21558 1.19016 1.46237 1.15670 1.55839 1.17517 1.20753 0.81922 0.78611 0.89774 1.90687 1.51947 1.61277 1.42009 1.21874 0.94883 1.03222 0.97363 1.21838 0.99876 0.91070 0.86985 0.83829 1.45703 1.69626 1.07563 1.14051 1.15926 0.77695 0.84570 0.81334 1.91032 1.59611 1.21896 1.73708 1.44106 1.63769 1.13030 1.12683 1.20549 0.75057 0.81803 0.89359 1.90864 1.49863 1.65503 1.29029 0.92924 0.95341 0.94104 0.91480 0.94199 0.92752 0.76095 0.84052 0.86163 0.70911 0.71252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.52 71.98 0.61 -4.32 16 2 C -0.12 -5.61 5.45 30.59 0.17 -5.44 16 3 C 0.28 12.96 2.24 44.24 0.10 13.06 16 4 H 0.00 0.20 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -27.08 8.73 25.60 0.22 -26.85 16 6 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -50.30 11.29 21.45 0.24 -50.06 16 9 Si 0.96 40.61 29.54 68.60 2.03 42.64 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 13 N -0.70 -24.27 5.02 -446.10 -2.24 -26.51 16 14 C 0.50 15.10 6.32 87.66 0.55 15.65 16 15 O -0.58 -21.14 12.38 -3.04 -0.04 -21.18 16 16 C -0.13 -2.47 5.44 29.85 0.16 -2.31 16 17 C 0.11 2.05 3.14 44.37 0.14 2.19 16 18 H 0.14 2.63 7.89 -2.38 -0.02 2.61 16 19 N -0.71 -14.95 5.96 -459.61 -2.74 -17.69 16 20 C 0.71 15.73 8.99 179.44 1.61 17.34 16 21 O -0.59 -17.60 18.04 -3.82 -0.07 -17.66 16 22 N -0.66 -10.76 5.70 -441.13 -2.52 -13.28 16 23 C 0.55 9.52 8.14 87.94 0.72 10.24 16 24 O -0.48 -10.41 18.02 -2.91 -0.05 -10.46 16 25 H 0.05 1.94 5.65 -2.39 -0.01 1.92 16 26 H 0.03 1.24 7.85 -2.39 -0.02 1.22 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 3.51 5.95 -2.39 -0.01 3.50 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.40 11.61 8.54 -92.71 -0.79 10.82 16 32 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.45 10.48 8.48 -92.71 -0.79 9.69 16 35 H 0.44 5.16 8.96 -92.71 -0.83 4.33 16 Total: -1.00 -65.99 299.07 -1.89 -67.88 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -1.24 Total: 25.40 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 4.74 Total: 20.92 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -7.25 Total: -107.54 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.16 Total: -49.31 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -65.99 -1.89 -67.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183972509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.256 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds