Wall clock time and date at job start Mon Mar 30 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 H 1.09008 * 109.47229 * 54.99916 * 3 2 1 5 5 C 1.50705 * 109.47193 * 174.99629 * 3 2 1 6 6 H 1.08001 * 119.99425 * 119.99873 * 5 3 2 7 7 C 1.37870 * 120.00124 * 300.00096 * 5 3 2 8 8 N 1.31518 * 120.00185 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00157 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47007 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47183 * 119.99946 * 9 7 5 12 12 H 1.48491 * 109.47484 * 240.00482 * 9 7 5 13 13 N 1.46497 * 109.47149 * 294.99636 * 3 2 1 14 14 C 1.34786 * 119.99732 * 85.00225 * 13 3 2 15 15 O 1.21753 * 119.99955 * 359.97438 * 14 13 3 16 16 C 1.46221 * 119.99774 * 179.72384 * 14 13 3 17 17 C 1.36710 * 126.10729 * 180.27369 * 16 14 13 18 18 N 1.30886 * 114.02819 * 179.97438 * 17 16 14 19 19 C 1.30228 * 117.26229 * 359.97438 * 18 17 16 20 20 N 1.37842 * 124.74447 * 179.97438 * 19 18 17 21 21 C 1.46493 * 120.00165 * 359.97438 * 20 19 18 22 22 S 1.70921 * 110.50763 * 359.76756 * 19 18 17 23 23 H 1.09001 * 109.47482 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47234 * 300.00243 * 1 2 3 25 25 H 1.09004 * 109.46981 * 60.00245 * 1 2 3 26 26 H 1.09000 * 109.47234 * 239.99757 * 2 1 3 27 27 H 1.09004 * 109.46981 * 119.99755 * 2 1 3 28 28 H 0.96996 * 119.99759 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00583 * 264.99801 * 13 3 2 30 30 H 1.08002 * 122.98768 * 359.92563 * 17 16 14 31 31 H 0.97002 * 119.99765 * 179.97438 * 20 19 18 32 32 H 1.09000 * 109.47082 * 299.99730 * 21 20 19 33 33 H 1.09003 * 109.46922 * 59.99663 * 21 20 19 34 34 H 1.09006 * 109.47166 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8799 1.3813 10 1 6.5988 1.5451 0.1938 11 1 6.3999 1.6156 2.6094 12 1 6.4961 -0.5191 1.4628 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3426 2.6318 -0.4308 16 6 0.0507 3.3234 -2.6144 17 6 -1.1434 3.9402 -2.8648 18 7 -1.2361 4.4546 -4.0648 19 6 -0.2077 4.3205 -4.8525 20 7 -0.1388 4.8000 -6.1429 21 6 -1.2775 5.5194 -6.7189 22 16 1.0466 3.4717 -4.0602 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0610 2.9500 29 1 2.2720 2.1231 -1.9978 30 1 -1.9397 3.9972 -2.1375 31 1 0.6638 4.6610 -6.6697 32 1 -2.1522 4.8690 -6.7261 33 1 -1.4883 6.4052 -6.1196 34 1 -1.0391 5.8197 -7.7393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184161476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:57 Heat of formation + Delta-G solvation = 6.816582 kcal Electronic energy + Delta-G solvation = -18111.003391 eV Core-core repulsion = 15170.663255 eV Total energy + Delta-G solvation = -2940.340136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77954 -38.65206 -35.93049 -34.94455 -32.38084 -31.07787 -29.44993 -27.48245 -26.77041 -24.33743 -23.03894 -21.44858 -19.54704 -19.36522 -19.09495 -17.15524 -16.43840 -15.72588 -15.35386 -15.14346 -14.83043 -14.43071 -14.36386 -13.75164 -13.36623 -13.02347 -12.67013 -12.55256 -12.02458 -11.51278 -11.40588 -11.23960 -10.94008 -10.83695 -10.35870 -10.29980 -10.17097 -9.76358 -9.60527 -9.27293 -9.11683 -9.01156 -8.48938 -7.91346 -7.68065 -6.11149 -4.20418 0.69931 1.03289 1.76755 2.82978 3.00509 3.24591 3.32462 3.35129 3.92734 4.13849 4.41070 4.61567 4.87038 5.20358 5.23915 5.49470 5.53986 5.71436 6.03509 6.43133 6.50425 6.63718 6.69788 6.81903 7.08318 7.22683 7.38665 7.45357 7.63703 7.73696 7.89543 7.92390 8.19402 8.65690 8.78442 9.10731 9.46698 10.94298 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.004687 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.556306 B = 5972.326114 C = 6639.560424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.586 3.414 15 O -0.540 6.540 16 C -0.313 4.313 17 C 0.153 3.847 18 N -0.550 5.550 19 C 0.309 3.691 20 N -0.696 5.696 21 C 0.103 3.897 22 S 0.130 5.870 23 H 0.023 0.977 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.031 0.969 27 H 0.100 0.900 28 H 0.264 0.736 29 H 0.384 0.616 30 H 0.187 0.813 31 H 0.416 0.584 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 6.964 -16.880 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.370 3.630 15 O -0.420 6.420 16 C -0.439 4.439 17 C -0.004 4.004 18 N -0.275 5.275 19 C -0.060 4.060 20 N -0.335 5.335 21 C -0.044 4.044 22 S 0.380 5.620 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.217 0.783 30 H 0.203 0.797 31 H 0.252 0.748 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.971 6.886 -16.577 18.626 hybrid contribution 0.897 -0.012 0.074 0.900 sum -4.074 6.875 -16.502 18.335 Atomic orbital electron populations 1.21848 0.98283 0.98092 1.01332 1.21938 0.92705 0.99687 1.02312 1.18839 0.94312 0.89246 0.80712 0.93024 1.21262 0.90656 1.38989 1.06326 0.92060 1.24876 0.98605 0.94792 0.95352 1.69906 1.35020 1.37635 1.09323 0.86405 0.84881 0.77763 0.78123 1.19744 1.20872 1.20866 1.46434 1.13987 1.55943 1.18610 1.16582 0.83010 0.78626 0.84795 1.90811 1.51643 1.60810 1.38771 1.25759 0.99909 1.18294 0.99988 1.22031 0.95896 0.91128 0.91296 1.66184 1.27240 1.28947 1.05175 1.23836 0.93914 0.96749 0.91493 1.43562 1.19734 1.60841 1.09336 1.21580 0.88611 0.96552 0.97615 1.83912 1.17210 1.53681 1.07148 0.95817 0.93055 0.94234 0.95031 0.88189 0.92607 0.78338 0.79661 0.74800 0.92125 0.92126 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.14 5.45 -26.74 -0.15 -3.29 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.68 11.30 55.43 0.63 -24.06 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -15.20 5.02 -56.38 -0.28 -15.49 16 14 C 0.59 12.31 6.34 -13.05 -0.08 12.23 16 15 O -0.54 -12.92 14.00 5.14 0.07 -12.85 16 16 C -0.31 -5.36 6.50 -36.93 -0.24 -5.60 16 17 C 0.15 2.44 11.14 -18.51 -0.21 2.23 16 18 N -0.55 -8.06 10.06 -14.77 -0.15 -8.21 16 19 C 0.31 3.86 8.05 -87.98 -0.71 3.15 16 20 N -0.70 -5.98 5.84 -69.21 -0.40 -6.38 16 21 C 0.10 0.70 10.95 59.84 0.66 1.36 16 22 S 0.13 1.71 22.33 -107.50 -2.40 -0.69 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 25 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.38 7.45 7.71 -40.82 -0.31 7.14 16 30 H 0.19 2.78 8.06 -52.49 -0.42 2.36 16 31 H 0.42 2.41 8.95 -40.82 -0.37 2.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -31.41 301.08 -8.14 -39.55 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.16 Total: 6.81 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.96 Total: 1.21 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.21 Total: -54.14 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.40 Total: -0.69 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.41 -8.14 -39.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184161476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.370 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds