Wall clock time and date at job start Mon Mar 30 2020 04:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47337 * 2 1 4 4 H 1.09008 * 109.47229 * 54.99916 * 3 2 1 5 5 C 1.50705 * 109.47193 * 174.99629 * 3 2 1 6 6 H 1.08001 * 119.99425 * 119.99873 * 5 3 2 7 7 C 1.37870 * 120.00124 * 300.00096 * 5 3 2 8 8 N 1.31518 * 120.00185 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00157 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47007 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47183 * 119.99946 * 9 7 5 12 12 H 1.48491 * 109.47484 * 240.00482 * 9 7 5 13 13 N 1.46497 * 109.47149 * 294.99636 * 3 2 1 14 14 C 1.34786 * 119.99732 * 85.00225 * 13 3 2 15 15 O 1.21753 * 119.99955 * 359.97438 * 14 13 3 16 16 C 1.46221 * 119.99774 * 179.72384 * 14 13 3 17 17 C 1.36710 * 126.10729 * 180.27369 * 16 14 13 18 18 N 1.30886 * 114.02819 * 179.97438 * 17 16 14 19 19 C 1.30228 * 117.26229 * 359.97438 * 18 17 16 20 20 N 1.37842 * 124.74447 * 179.97438 * 19 18 17 21 21 C 1.46493 * 120.00165 * 359.97438 * 20 19 18 22 22 S 1.70921 * 110.50763 * 359.76756 * 19 18 17 23 23 H 1.09001 * 109.47482 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47234 * 300.00243 * 1 2 3 25 25 H 1.09004 * 109.46981 * 60.00245 * 1 2 3 26 26 H 1.09000 * 109.47234 * 239.99757 * 2 1 3 27 27 H 1.09004 * 109.46981 * 119.99755 * 2 1 3 28 28 H 0.96996 * 119.99759 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00583 * 264.99801 * 13 3 2 30 30 H 1.08002 * 122.98768 * 359.92563 * 17 16 14 31 31 H 0.97002 * 119.99765 * 179.97438 * 20 19 18 32 32 H 1.09000 * 109.47082 * 299.99730 * 21 20 19 33 33 H 1.09003 * 109.46922 * 59.99663 * 21 20 19 34 34 H 1.09006 * 109.47166 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8783 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8799 1.3813 10 1 6.5988 1.5451 0.1938 11 1 6.3999 1.6156 2.6094 12 1 6.4961 -0.5191 1.4628 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3426 2.6318 -0.4308 16 6 0.0507 3.3234 -2.6144 17 6 -1.1434 3.9402 -2.8648 18 7 -1.2361 4.4546 -4.0648 19 6 -0.2077 4.3205 -4.8525 20 7 -0.1388 4.8000 -6.1429 21 6 -1.2775 5.5194 -6.7189 22 16 1.0466 3.4717 -4.0602 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0610 2.9500 29 1 2.2720 2.1231 -1.9978 30 1 -1.9397 3.9972 -2.1375 31 1 0.6638 4.6610 -6.6697 32 1 -2.1522 4.8690 -6.7261 33 1 -1.4883 6.4052 -6.1196 34 1 -1.0391 5.8197 -7.7393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184161476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:56 Heat of formation + Delta-G solvation = -15.822696 kcal Electronic energy + Delta-G solvation = -18111.985104 eV Core-core repulsion = 15170.663255 eV Total energy + Delta-G solvation = -2941.321849 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05377 -40.17817 -37.05932 -36.61177 -34.31260 -32.93725 -30.73750 -28.95613 -28.06769 -25.59487 -24.80620 -22.96891 -21.38347 -20.68250 -20.28186 -18.75437 -17.69604 -17.42618 -16.85291 -16.49122 -16.16558 -15.91005 -15.68062 -15.24066 -14.59461 -14.51159 -14.28595 -13.78639 -13.46842 -13.17609 -13.06450 -12.88844 -12.69495 -12.52263 -12.15122 -12.05797 -11.59569 -11.32360 -11.08059 -11.03188 -10.65246 -10.51118 -10.37296 -9.68228 -8.76773 -8.15219 -6.32784 -0.47379 -0.01921 0.61735 1.45321 1.46320 1.58254 1.61168 2.15962 2.35838 2.40719 2.65000 3.14314 3.58287 4.11754 4.37809 4.44763 4.50637 4.58504 4.66656 4.77462 4.88535 5.01044 5.08127 5.27000 5.44779 5.54842 5.60664 5.69630 5.79069 5.90591 6.09312 6.16723 6.73732 6.84981 6.94172 7.32259 7.50448 8.90558 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029636 B = 0.004687 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.556306 B = 5972.326114 C = 6639.560424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.702 5.702 14 C 0.587 3.413 15 O -0.581 6.581 16 C -0.362 4.362 17 C 0.172 3.828 18 N -0.570 5.570 19 C 0.318 3.682 20 N -0.673 5.673 21 C 0.096 3.904 22 S 0.174 5.826 23 H 0.047 0.953 24 H 0.028 0.972 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.265 0.735 29 H 0.396 0.604 30 H 0.185 0.815 31 H 0.432 0.568 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 7.667 -19.944 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.350 5.350 14 C 0.374 3.626 15 O -0.464 6.464 16 C -0.489 4.489 17 C 0.013 3.987 18 N -0.296 5.296 19 C -0.051 4.051 20 N -0.312 5.312 21 C -0.049 4.049 22 S 0.424 5.576 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.230 0.770 30 H 0.202 0.798 31 H 0.272 0.728 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.981 7.616 -19.746 21.535 hybrid contribution 0.512 -0.112 0.842 0.991 sum -3.469 7.504 -18.904 20.633 Atomic orbital electron populations 1.21685 0.96980 0.99218 1.00284 1.21790 0.93790 0.98999 1.01396 1.18444 0.93869 0.89263 0.80898 0.97980 1.21581 0.91249 1.39120 1.06825 0.91196 1.25759 1.03388 0.94265 0.94901 1.70053 1.37025 1.38258 1.09843 0.85313 0.79007 0.77891 0.78218 1.18462 1.20970 1.20306 1.46170 1.14808 1.56311 1.17735 1.16984 0.82052 0.77828 0.85754 1.90773 1.52557 1.62259 1.40791 1.25241 1.01966 1.21156 1.00533 1.22111 0.95345 0.89570 0.91714 1.66263 1.28186 1.30206 1.04963 1.24154 0.93232 0.95281 0.92440 1.43874 1.20960 1.58692 1.07688 1.21819 0.87781 0.95789 0.99531 1.83614 1.15725 1.53614 1.04605 0.93427 0.95301 0.94056 0.94103 0.90666 0.92528 0.76976 0.79818 0.72813 0.92713 0.92777 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.19 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.94 16 3 C 0.28 14.70 2.24 44.25 0.10 14.80 16 4 H 0.00 0.14 7.58 -2.38 -0.02 0.13 16 5 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.93 5.29 84.65 0.45 1.37 16 8 N -0.91 -52.48 11.30 21.45 0.24 -52.24 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.70 -31.02 5.02 -450.47 -2.26 -33.28 16 14 C 0.59 25.36 6.34 86.32 0.55 25.91 16 15 O -0.58 -29.16 14.00 -4.52 -0.06 -29.22 16 16 C -0.36 -12.35 6.50 23.99 0.16 -12.19 16 17 C 0.17 5.42 11.14 84.48 0.94 6.36 16 18 N -0.57 -15.78 10.06 -200.63 -2.02 -17.80 16 19 C 0.32 7.13 8.05 179.43 1.44 8.57 16 20 N -0.67 -9.05 5.84 -372.89 -2.18 -11.23 16 21 C 0.10 0.96 10.95 127.77 1.40 2.36 16 22 S 0.17 4.22 22.33 -56.49 -1.26 2.96 16 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 25 H 0.04 1.89 5.64 -2.38 -0.01 1.87 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 4.20 5.95 -2.38 -0.01 4.19 16 28 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.40 15.32 7.71 -92.71 -0.71 14.61 16 30 H 0.18 5.64 8.06 -2.91 -0.02 5.62 16 31 H 0.43 3.09 8.95 -92.71 -0.83 2.26 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -70.05 301.08 0.12 -69.93 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.40 Total: 19.98 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.04 Total: 6.70 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -6.21 Total: -114.55 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.26 Total: 2.96 kcal Total: -70.05 0.12 -69.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184161476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.108 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds