Wall clock time and date at job start Mon Mar 30 2020 04:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21748 * 119.99867 * 359.97438 * 14 13 3 16 16 C 1.46228 * 120.00321 * 179.97438 * 14 13 3 17 17 C 1.36708 * 126.11116 * 180.02562 * 16 14 13 18 18 N 1.30880 * 114.02736 * 180.02562 * 17 16 14 19 19 C 1.30235 * 117.26669 * 359.97438 * 18 17 16 20 20 N 1.37839 * 124.74880 * 180.02562 * 19 18 17 21 21 C 1.46502 * 119.99983 * 359.97438 * 20 19 18 22 22 S 1.70923 * 110.50024 * 359.73428 * 19 18 17 23 23 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 25 25 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 26 26 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 27 27 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 28 28 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 30 30 H 1.07993 * 122.98441 * 359.97438 * 17 16 14 31 31 H 0.96997 * 119.99604 * 179.97438 * 20 19 18 32 32 H 1.08998 * 109.47163 * 300.00291 * 21 20 19 33 33 H 1.09006 * 109.46691 * 60.00436 * 21 20 19 34 34 H 1.09004 * 109.46939 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3396 2.6316 0.4476 16 6 0.0641 3.3121 2.6326 17 6 -1.1308 3.9226 2.8940 18 7 -1.2181 4.4300 4.0972 19 6 -0.1847 4.2949 4.8782 20 7 -0.1096 4.7675 6.1708 21 6 -1.2469 5.4811 6.7571 22 16 1.0625 3.4426 4.0785 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.8033 0.3145 -3.1314 29 1 2.2841 2.1188 1.9977 30 1 -1.9313 3.9817 2.1714 31 1 0.6962 4.6276 6.6923 32 1 -1.4632 6.3696 6.1640 33 1 -2.1199 4.8284 6.7656 34 1 -1.0035 5.7763 7.7778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184161494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:00 Heat of formation + Delta-G solvation = 5.564689 kcal Electronic energy + Delta-G solvation = -18102.761559 eV Core-core repulsion = 15162.367137 eV Total energy + Delta-G solvation = -2940.394422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77975 -38.65436 -35.93029 -34.93348 -32.35864 -31.15410 -29.45727 -27.48129 -26.77174 -24.33829 -23.03205 -21.46989 -19.58397 -19.36993 -19.09931 -17.15392 -16.43631 -15.71799 -15.35829 -15.14188 -14.83070 -14.43016 -14.36224 -13.76004 -13.37417 -13.02894 -12.67385 -12.55316 -12.05894 -11.48012 -11.39855 -11.31956 -10.98888 -10.78223 -10.36291 -10.33667 -10.19114 -9.76511 -9.66108 -9.27296 -9.10041 -9.05963 -8.47815 -7.92456 -7.68664 -6.12604 -4.19085 0.69927 1.03243 1.76738 2.83011 3.00489 3.26130 3.32743 3.34243 3.92713 4.14004 4.41438 4.61549 4.87043 5.20487 5.23918 5.49476 5.53998 5.71261 6.03571 6.38986 6.44590 6.63424 6.64558 6.81880 7.03924 7.19797 7.34965 7.42899 7.62270 7.72315 7.86301 7.90377 8.09898 8.65929 8.79671 9.10736 9.46972 10.95319 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.004682 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.805434 B = 5979.329215 C = 6632.684518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.058 0.942 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.586 3.414 15 O -0.539 6.539 16 C -0.313 4.313 17 C 0.154 3.846 18 N -0.550 5.550 19 C 0.309 3.691 20 N -0.696 5.696 21 C 0.103 3.897 22 S 0.130 5.870 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.083 0.917 28 H 0.265 0.735 29 H 0.384 0.616 30 H 0.187 0.813 31 H 0.416 0.584 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 6.342 17.249 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.370 3.630 15 O -0.420 6.420 16 C -0.440 4.440 17 C -0.003 4.003 18 N -0.275 5.275 19 C -0.060 4.060 20 N -0.335 5.335 21 C -0.044 4.044 22 S 0.380 5.620 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.203 0.797 31 H 0.252 0.748 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.003 6.275 16.933 18.739 hybrid contribution 0.930 -0.102 -0.061 0.937 sum -4.074 6.173 16.872 18.422 Atomic orbital electron populations 1.21852 0.98016 0.98198 1.01581 1.21856 0.93012 0.99748 1.01353 1.18836 0.94511 0.89062 0.80801 0.92451 1.21180 0.90569 1.43579 1.02213 0.92133 1.24876 0.98463 0.95067 0.95054 1.69967 1.35398 1.43034 1.03273 0.86515 0.85026 0.78621 0.77268 1.20430 1.21140 1.19905 1.46418 1.13919 1.56012 1.18612 1.16580 0.83045 0.78604 0.84777 1.90812 1.51305 1.60648 1.39213 1.25758 0.99868 1.18474 0.99854 1.22029 0.95914 0.91255 0.91142 1.66183 1.26994 1.29007 1.05362 1.23837 0.93937 0.96699 0.91515 1.43562 1.19528 1.61224 1.09157 1.21582 0.88647 0.96659 0.97469 1.83906 1.17705 1.53554 1.06802 0.95756 0.92908 0.93988 0.94787 0.89814 0.92536 0.78361 0.79658 0.74801 0.92119 0.92125 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.15 0.32 -2.81 16 2 C -0.12 -2.93 5.49 -26.74 -0.15 -3.08 16 3 C 0.27 6.86 2.11 -69.09 -0.15 6.71 16 4 H 0.06 1.69 7.55 -51.93 -0.39 1.30 16 5 C -0.54 -14.28 8.67 -34.44 -0.30 -14.57 16 6 H 0.06 1.54 7.73 -52.48 -0.41 1.14 16 7 C 0.07 1.86 5.19 -17.82 -0.09 1.77 16 8 N -0.88 -24.87 12.00 55.43 0.67 -24.20 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.70 -15.16 5.02 -56.39 -0.28 -15.44 16 14 C 0.59 12.29 6.35 -13.05 -0.08 12.21 16 15 O -0.54 -12.90 14.00 5.15 0.07 -12.83 16 16 C -0.31 -5.35 6.50 -36.93 -0.24 -5.59 16 17 C 0.15 2.44 11.14 -18.51 -0.21 2.23 16 18 N -0.55 -8.05 10.06 -14.77 -0.15 -8.20 16 19 C 0.31 3.85 8.05 -87.98 -0.71 3.14 16 20 N -0.70 -5.97 5.84 -69.21 -0.40 -6.37 16 21 C 0.10 0.70 10.95 59.85 0.66 1.36 16 22 S 0.13 1.70 22.33 -107.50 -2.40 -0.70 16 23 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.05 1.26 7.86 -51.93 -0.41 0.85 16 25 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 2.22 6.64 -51.93 -0.34 1.88 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.38 7.41 7.69 -40.82 -0.31 7.10 16 30 H 0.19 2.78 8.06 -52.49 -0.42 2.36 16 31 H 0.42 2.40 8.95 -40.82 -0.37 2.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 302.23 15.07 4.55 4.55 Total: -1.00 -31.56 302.23 -8.11 -39.67 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.19 Total: 6.57 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.95 Total: 1.37 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.17 Total: -54.21 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.40 Total: -0.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.56 -8.11 -39.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184161494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.230 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds