Wall clock time and date at job start Mon Mar 30 2020 04:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21748 * 119.99867 * 359.97438 * 14 13 3 16 16 C 1.46228 * 120.00321 * 179.97438 * 14 13 3 17 17 C 1.36708 * 126.11116 * 180.02562 * 16 14 13 18 18 N 1.30880 * 114.02736 * 180.02562 * 17 16 14 19 19 C 1.30235 * 117.26669 * 359.97438 * 18 17 16 20 20 N 1.37839 * 124.74880 * 180.02562 * 19 18 17 21 21 C 1.46502 * 119.99983 * 359.97438 * 20 19 18 22 22 S 1.70923 * 110.50024 * 359.73428 * 19 18 17 23 23 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 25 25 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 26 26 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 27 27 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 28 28 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 29 29 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 30 30 H 1.07993 * 122.98441 * 359.97438 * 17 16 14 31 31 H 0.96997 * 119.99604 * 179.97438 * 20 19 18 32 32 H 1.08998 * 109.47163 * 300.00291 * 21 20 19 33 33 H 1.09006 * 109.46691 * 60.00436 * 21 20 19 34 34 H 1.09004 * 109.46939 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3396 2.6316 0.4476 16 6 0.0641 3.3121 2.6326 17 6 -1.1308 3.9226 2.8940 18 7 -1.2181 4.4300 4.0972 19 6 -0.1847 4.2949 4.8782 20 7 -0.1096 4.7675 6.1708 21 6 -1.2469 5.4811 6.7571 22 16 1.0625 3.4426 4.0785 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.8033 0.3145 -3.1314 29 1 2.2841 2.1188 1.9977 30 1 -1.9313 3.9817 2.1714 31 1 0.6962 4.6276 6.6923 32 1 -1.4632 6.3696 6.1640 33 1 -2.1199 4.8284 6.7656 34 1 -1.0035 5.7763 7.7778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184161494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:00 Heat of formation + Delta-G solvation = -17.297820 kcal Electronic energy + Delta-G solvation = -18103.752952 eV Core-core repulsion = 15162.367137 eV Total energy + Delta-G solvation = -2941.385815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05231 -40.17672 -37.04731 -36.60405 -34.30094 -33.00126 -30.73548 -28.95356 -28.06811 -25.59169 -24.79991 -22.98667 -21.40880 -20.68481 -20.28095 -18.74919 -17.68947 -17.42712 -16.85449 -16.48366 -16.15601 -15.91803 -15.67983 -15.24727 -14.59653 -14.50879 -14.28794 -13.79469 -13.43835 -13.25883 -13.06428 -12.92111 -12.62043 -12.52489 -12.19506 -12.08050 -11.62720 -11.32126 -11.08964 -11.05541 -10.63310 -10.51721 -10.37053 -9.69155 -8.76563 -8.17564 -6.32168 -0.47166 -0.01710 0.61918 1.45870 1.46921 1.56563 1.61370 2.16148 2.36102 2.41009 2.64917 3.13914 3.58456 4.11988 4.38044 4.44935 4.48092 4.55225 4.66762 4.74141 4.88712 5.01172 5.07418 5.24673 5.43113 5.51747 5.60406 5.69736 5.75623 5.89505 6.07767 6.09835 6.74930 6.85175 6.94307 7.32417 7.50543 8.90830 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.004682 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.805434 B = 5979.329215 C = 6632.684518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.277 3.723 4 H 0.006 0.994 5 C -0.552 4.552 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.586 3.414 15 O -0.581 6.581 16 C -0.362 4.362 17 C 0.172 3.828 18 N -0.570 5.570 19 C 0.318 3.682 20 N -0.673 5.673 21 C 0.096 3.904 22 S 0.175 5.825 23 H 0.049 0.951 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.265 0.735 29 H 0.396 0.604 30 H 0.185 0.815 31 H 0.432 0.568 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 6.878 20.441 21.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.590 4.590 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.350 5.350 14 C 0.374 3.626 15 O -0.464 6.464 16 C -0.489 4.489 17 C 0.013 3.987 18 N -0.296 5.296 19 C -0.051 4.051 20 N -0.312 5.312 21 C -0.049 4.049 22 S 0.425 5.575 23 H 0.068 0.932 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.202 0.798 31 H 0.272 0.728 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.966 6.837 20.233 21.722 hybrid contribution 0.530 -0.141 -0.863 1.023 sum -3.436 6.696 19.370 20.780 Atomic orbital electron populations 1.21690 0.96735 0.99398 1.00455 1.21709 0.94074 0.98881 1.00579 1.18440 0.93997 0.89209 0.80938 0.97619 1.21527 0.91230 1.43553 1.02669 0.91134 1.25766 1.03288 0.94577 0.94572 1.70117 1.37476 1.43864 1.03861 0.85408 0.79074 0.79047 0.77129 1.19449 1.21297 1.18852 1.46157 1.14740 1.56382 1.17730 1.16983 0.82092 0.77798 0.85748 1.90775 1.52237 1.62109 1.41243 1.25242 1.01933 1.21363 1.00357 1.22105 0.95379 0.89698 0.91568 1.66262 1.27957 1.30273 1.05137 1.24156 0.93257 0.95240 0.92470 1.43873 1.20765 1.59069 1.07508 1.21820 0.87837 0.95891 0.99369 1.83602 1.16187 1.53475 1.04227 0.93212 0.95311 0.93818 0.93475 0.92368 0.92554 0.76965 0.79837 0.72812 0.92788 0.92707 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.52 71.98 0.61 -5.17 16 2 C -0.11 -5.64 5.49 30.59 0.17 -5.48 16 3 C 0.28 14.61 2.11 44.25 0.09 14.70 16 4 H 0.01 0.37 7.55 -2.38 -0.02 0.35 16 5 C -0.55 -29.67 8.67 25.60 0.22 -29.45 16 6 H 0.07 3.56 7.73 -2.91 -0.02 3.54 16 7 C 0.02 1.01 5.19 84.65 0.44 1.45 16 8 N -0.92 -53.24 12.00 21.45 0.26 -52.98 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 13 N -0.70 -30.90 5.02 -450.51 -2.26 -33.17 16 14 C 0.59 25.33 6.35 86.32 0.55 25.88 16 15 O -0.58 -29.17 14.00 -4.50 -0.06 -29.24 16 16 C -0.36 -12.32 6.50 23.99 0.16 -12.17 16 17 C 0.17 5.41 11.14 84.48 0.94 6.35 16 18 N -0.57 -15.77 10.06 -200.64 -2.02 -17.79 16 19 C 0.32 7.10 8.05 179.42 1.44 8.55 16 20 N -0.67 -9.02 5.84 -372.86 -2.18 -11.20 16 21 C 0.10 0.96 10.95 127.77 1.40 2.36 16 22 S 0.17 4.22 22.33 -56.49 -1.26 2.96 16 23 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.03 1.42 7.86 -2.39 -0.02 1.40 16 25 H 0.04 1.97 5.64 -2.38 -0.01 1.96 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.06 3.19 6.64 -2.38 -0.02 3.17 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.40 15.21 7.69 -92.71 -0.71 14.50 16 30 H 0.18 5.64 8.06 -2.91 -0.02 5.61 16 31 H 0.43 3.06 8.95 -92.71 -0.83 2.23 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -70.64 302.23 0.13 -70.52 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.40 Total: 19.64 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.03 Total: 7.02 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -6.20 Total: -115.13 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.24 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.26 Total: 2.96 kcal Total: -70.64 0.13 -70.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184161494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.221 kcal (2) G-P(sol) polarization free energy of solvation -70.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds