Wall clock time and date at job start Mon Mar 30 2020 04:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36941 * 120.00339 * 2 1 4 4 H 1.07992 * 120.00055 * 203.05109 * 3 2 1 5 5 C 1.38813 * 119.99868 * 23.04538 * 3 2 1 6 6 N 1.31619 * 119.99758 * 12.92931 * 5 3 2 7 7 Si 1.86794 * 119.99882 * 192.93081 * 5 3 2 8 8 H 1.48500 * 109.47097 * 90.00344 * 7 5 3 9 9 H 1.48503 * 109.47132 * 210.00020 * 7 5 3 10 10 H 1.48493 * 109.47138 * 330.00152 * 7 5 3 11 11 C 1.46503 * 119.99801 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47583 * 89.99795 * 11 2 1 13 13 C 1.50702 * 109.47554 * 180.02562 * 12 11 2 14 14 O 1.21294 * 119.99439 * 0.02562 * 13 12 11 15 15 C 1.46824 * 120.00186 * 180.02562 * 13 12 11 16 16 C 1.40043 * 120.17116 * 359.72082 * 15 13 12 17 17 C 1.37629 * 119.87697 * 179.69859 * 16 15 13 18 18 C 1.38837 * 120.21934 * 0.60476 * 17 16 15 19 19 F 1.35107 * 119.82267 * 179.69484 * 18 17 16 20 20 C 1.38530 * 120.34739 * 359.67247 * 18 17 16 21 21 C 1.38127 * 120.12196 * 0.02562 * 20 18 17 22 22 F 1.35097 * 120.11483 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.47153 * 275.12141 * 1 2 3 24 24 H 1.09007 * 109.47271 * 35.12174 * 1 2 3 25 25 H 1.09000 * 109.48021 * 155.12457 * 1 2 3 26 26 H 0.96999 * 119.99946 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.47014 * 329.99022 * 11 2 1 28 28 H 1.09001 * 109.46866 * 210.00291 * 11 2 1 29 29 H 1.09000 * 109.46928 * 300.00307 * 12 11 2 30 30 H 1.09002 * 109.47075 * 59.99427 * 12 11 2 31 31 H 1.08006 * 120.05891 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.88828 * 180.27158 * 17 16 15 33 33 H 1.07999 * 119.93841 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2597 1.1458 7 14 2.3160 4.0073 0.1455 8 1 1.7988 4.5533 -1.1349 9 1 1.9761 4.9363 1.2530 10 1 3.7909 3.8576 0.0600 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 6 3.2053 -3.0154 -1.4437 14 8 3.5077 -3.5414 -0.3935 15 6 3.5727 -3.6504 -2.7155 16 6 3.2202 -3.0491 -3.9302 17 6 3.5731 -3.6465 -5.1187 18 6 4.2663 -4.8494 -5.1175 19 9 4.6033 -5.4319 -6.2890 20 6 4.6147 -5.4552 -3.9213 21 6 4.2731 -4.8650 -2.7201 22 9 4.6124 -5.4562 -1.5537 23 1 -0.3634 0.0917 1.0236 24 1 -0.3634 0.8406 -0.5913 25 1 -0.3635 -0.9323 -0.4323 26 1 -0.0153 3.0663 1.4744 27 1 1.6083 -2.0286 0.5131 28 1 3.1498 -1.1387 0.5134 29 1 1.5000 -1.8400 -1.9570 30 1 3.0414 -0.9500 -1.9567 31 1 2.6763 -2.1160 -3.9341 32 1 3.3052 -3.1807 -6.0555 33 1 5.1543 -6.3907 -3.9281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186935618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:42 Heat of formation + Delta-G solvation = -78.611117 kcal Electronic energy + Delta-G solvation = -19674.707067 eV Core-core repulsion = 16144.529370 eV Total energy + Delta-G solvation = -3530.177697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.41849 -49.15351 -39.83762 -38.15954 -35.63070 -32.34307 -31.46863 -30.89652 -29.36519 -25.90159 -25.04224 -23.78775 -22.88296 -20.78616 -19.55455 -18.51852 -17.42281 -16.92273 -16.54195 -16.32595 -15.94273 -15.61880 -15.10849 -14.81864 -14.73145 -14.46116 -14.28715 -13.43776 -13.31904 -13.04750 -12.69899 -12.40875 -12.27464 -11.97628 -11.81049 -11.13765 -10.87170 -10.83346 -10.53653 -10.25486 -9.90139 -9.84806 -9.54072 -9.47391 -9.07044 -8.54674 -6.75258 -5.72108 -3.19867 0.17354 0.67869 2.24592 3.23945 3.37738 3.43967 3.45259 3.45870 3.92742 4.03829 4.20885 4.46785 4.51058 4.75937 5.07403 5.39608 5.40158 5.51552 5.55844 5.64725 5.68715 5.71751 5.73064 6.05506 6.31120 6.37159 6.66324 6.73940 6.93540 7.36469 7.66118 7.74120 7.80679 8.40144 9.24002 9.87175 10.36403 11.32737 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003979 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.382749 B = 7034.532932 C = 7501.619161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.603 5.603 3 C -0.258 4.258 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.161 3.839 12 C -0.183 4.183 13 C 0.394 3.606 14 O -0.440 6.440 15 C -0.210 4.210 16 C -0.012 4.012 17 C -0.178 4.178 18 C 0.154 3.846 19 F -0.129 7.129 20 C -0.210 4.210 21 C 0.183 3.817 22 F -0.109 7.109 23 H 0.031 0.969 24 H 0.041 0.959 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -13.458 -13.733 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.325 5.325 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.033 3.967 12 C -0.223 4.223 13 C 0.270 3.730 14 O -0.314 6.314 15 C -0.212 4.212 16 C -0.030 4.030 17 C -0.197 4.197 18 C 0.135 3.865 19 F -0.107 7.107 20 C -0.230 4.230 21 C 0.163 3.837 22 F -0.087 7.087 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.568 -13.627 -13.054 19.675 hybrid contribution 0.506 0.692 -0.394 0.944 sum 6.074 -12.934 -13.449 19.623 Atomic orbital electron populations 1.20807 0.82619 0.95291 0.99618 1.43946 1.01888 1.00660 1.86032 1.19203 0.98310 0.85560 1.35701 0.91341 1.25037 0.97893 0.98564 0.98083 1.70074 1.19448 1.27195 1.38459 0.86254 0.78783 0.84128 0.77378 1.21496 1.21738 1.20462 1.20500 0.96944 0.88433 0.90842 1.22801 1.00558 0.93656 1.05291 1.22639 0.76851 0.87203 0.86321 1.90571 1.44359 1.62679 1.33836 1.21098 1.05562 0.96694 0.97841 1.21357 0.93559 0.98727 0.89387 1.21206 1.02509 0.95473 1.00462 1.17577 0.96204 0.92066 0.80701 1.91551 1.90034 1.83683 1.45417 1.20988 1.07824 1.04022 0.90176 1.17569 0.94145 0.90634 0.81379 1.91622 1.89160 1.82478 1.45405 0.95030 0.94056 0.98388 0.93733 0.93967 0.92856 0.88961 0.88295 0.82420 0.83318 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.98 59.84 0.54 4.47 16 2 N -0.60 -15.07 2.92 -181.12 -0.53 -15.60 16 3 C -0.26 -7.01 9.65 -15.06 -0.15 -7.15 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 5 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 6 N -0.91 -26.44 10.71 55.49 0.59 -25.84 16 7 Si 0.90 21.58 29.57 -169.99 -5.03 16.56 16 8 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.16 3.37 4.93 -4.04 -0.02 3.35 16 12 C -0.18 -2.94 4.63 -27.89 -0.13 -3.07 16 13 C 0.39 6.09 7.11 -30.84 -0.22 5.87 16 14 O -0.44 -8.24 14.97 5.55 0.08 -8.16 16 15 C -0.21 -2.61 5.88 -105.01 -0.62 -3.23 16 16 C -0.01 -0.11 9.46 -39.13 -0.37 -0.48 16 17 C -0.18 -1.46 10.00 -39.58 -0.40 -1.86 16 18 C 0.15 1.41 7.31 -39.25 -0.29 1.13 16 19 F -0.13 -1.19 17.26 2.25 0.04 -1.15 16 20 C -0.21 -2.06 9.99 -39.51 -0.39 -2.46 16 21 C 0.18 2.26 7.29 -38.88 -0.28 1.97 16 22 F -0.11 -1.57 15.55 2.25 0.04 -1.54 16 23 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 24 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 25 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 28 H 0.05 1.18 8.00 -51.93 -0.42 0.77 16 29 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 30 H 0.10 1.54 8.09 -51.93 -0.42 1.12 16 31 H 0.16 1.23 7.05 -52.48 -0.37 0.86 16 32 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -31.33 296.86 -6.36 -37.69 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -3.61 Total: -4.95 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.41 Total: -1.48 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.06 Total: -41.44 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.07 Total: -2.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.33 -6.36 -37.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186935618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.922 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds