Wall clock time and date at job start Mon Mar 30 2020 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36941 * 120.00339 * 2 1 4 4 H 1.07992 * 120.00055 * 203.05109 * 3 2 1 5 5 C 1.38813 * 119.99868 * 23.04538 * 3 2 1 6 6 N 1.31619 * 119.99758 * 12.92931 * 5 3 2 7 7 Si 1.86794 * 119.99882 * 192.93081 * 5 3 2 8 8 H 1.48500 * 109.47097 * 90.00344 * 7 5 3 9 9 H 1.48503 * 109.47132 * 210.00020 * 7 5 3 10 10 H 1.48493 * 109.47138 * 330.00152 * 7 5 3 11 11 C 1.46503 * 119.99801 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47583 * 89.99795 * 11 2 1 13 13 C 1.50702 * 109.47554 * 180.02562 * 12 11 2 14 14 O 1.21294 * 119.99439 * 0.02562 * 13 12 11 15 15 C 1.46824 * 120.00186 * 180.02562 * 13 12 11 16 16 C 1.40043 * 120.17116 * 359.72082 * 15 13 12 17 17 C 1.37629 * 119.87697 * 179.69859 * 16 15 13 18 18 C 1.38837 * 120.21934 * 0.60476 * 17 16 15 19 19 F 1.35107 * 119.82267 * 179.69484 * 18 17 16 20 20 C 1.38530 * 120.34739 * 359.67247 * 18 17 16 21 21 C 1.38127 * 120.12196 * 0.02562 * 20 18 17 22 22 F 1.35097 * 120.11483 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.47153 * 275.12141 * 1 2 3 24 24 H 1.09007 * 109.47271 * 35.12174 * 1 2 3 25 25 H 1.09000 * 109.48021 * 155.12457 * 1 2 3 26 26 H 0.96999 * 119.99946 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.47014 * 329.99022 * 11 2 1 28 28 H 1.09001 * 109.46866 * 210.00291 * 11 2 1 29 29 H 1.09000 * 109.46928 * 300.00307 * 12 11 2 30 30 H 1.09002 * 109.47075 * 59.99427 * 12 11 2 31 31 H 1.08006 * 120.05891 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.88828 * 180.27158 * 17 16 15 33 33 H 1.07999 * 119.93841 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2597 1.1458 7 14 2.3160 4.0073 0.1455 8 1 1.7988 4.5533 -1.1349 9 1 1.9761 4.9363 1.2530 10 1 3.7909 3.8576 0.0600 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 6 3.2053 -3.0154 -1.4437 14 8 3.5077 -3.5414 -0.3935 15 6 3.5727 -3.6504 -2.7155 16 6 3.2202 -3.0491 -3.9302 17 6 3.5731 -3.6465 -5.1187 18 6 4.2663 -4.8494 -5.1175 19 9 4.6033 -5.4319 -6.2890 20 6 4.6147 -5.4552 -3.9213 21 6 4.2731 -4.8650 -2.7201 22 9 4.6124 -5.4562 -1.5537 23 1 -0.3634 0.0917 1.0236 24 1 -0.3634 0.8406 -0.5913 25 1 -0.3635 -0.9323 -0.4323 26 1 -0.0153 3.0663 1.4744 27 1 1.6083 -2.0286 0.5131 28 1 3.1498 -1.1387 0.5134 29 1 1.5000 -1.8400 -1.9570 30 1 3.0414 -0.9500 -1.9567 31 1 2.6763 -2.1160 -3.9341 32 1 3.3052 -3.1807 -6.0555 33 1 5.1543 -6.3907 -3.9281 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186935618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:41 Heat of formation + Delta-G solvation = -96.195816 kcal Electronic energy + Delta-G solvation = -19675.469597 eV Core-core repulsion = 16144.529370 eV Total energy + Delta-G solvation = -3530.940226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.15451 -50.13020 -40.94180 -39.15690 -37.50232 -33.96131 -32.72597 -31.74121 -30.90862 -27.91038 -26.51563 -24.78123 -23.94796 -22.41712 -20.80537 -19.34838 -18.72694 -18.28675 -17.85193 -17.20980 -16.80735 -16.78471 -16.51701 -16.17658 -15.93225 -15.55347 -15.26630 -15.21517 -14.78624 -14.35508 -14.01725 -13.73348 -13.57572 -13.00802 -12.93350 -12.75701 -12.67633 -12.47731 -12.38461 -12.10394 -11.89406 -11.63437 -10.85312 -10.57679 -10.24295 -9.91200 -8.77540 -7.80456 -5.31126 -0.71466 -0.07665 1.21067 1.50318 1.50844 1.60020 2.36404 2.51377 2.64789 2.87325 3.20975 3.33346 3.45711 3.75467 3.80195 4.00641 4.13321 4.28328 4.37763 4.61831 4.74047 4.78369 4.84571 4.87916 4.96455 5.00065 5.08281 5.21746 5.42820 5.59095 5.66037 5.73919 6.33948 6.48239 7.17155 7.87599 8.32344 9.22933 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003979 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.382749 B = 7034.532932 C = 7501.619161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.619 5.619 3 C -0.264 4.264 4 H 0.075 0.925 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.281 1.281 9 H -0.299 1.299 10 H -0.269 1.269 11 C 0.159 3.841 12 C -0.167 4.167 13 C 0.401 3.599 14 O -0.485 6.485 15 C -0.227 4.227 16 C -0.002 4.002 17 C -0.162 4.162 18 C 0.160 3.840 19 F -0.125 7.125 20 C -0.205 4.205 21 C 0.161 3.839 22 F -0.129 7.129 23 H -0.001 1.001 24 H 0.022 0.978 25 H 0.035 0.965 26 H 0.248 0.752 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -13.536 -16.677 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.342 5.342 3 C -0.394 4.394 4 H 0.092 0.908 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.207 1.207 9 H -0.226 1.226 10 H -0.193 1.193 11 C 0.033 3.967 12 C -0.207 4.207 13 C 0.280 3.720 14 O -0.362 6.362 15 C -0.229 4.229 16 C -0.020 4.020 17 C -0.181 4.181 18 C 0.140 3.860 19 F -0.104 7.104 20 C -0.225 4.225 21 C 0.141 3.859 22 F -0.108 7.108 23 H 0.017 0.983 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.196 0.804 32 H 0.199 0.801 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.193 -13.737 -16.037 22.005 hybrid contribution 0.347 0.617 0.454 0.841 sum 6.540 -13.120 -15.583 21.395 Atomic orbital electron populations 1.20570 0.82540 0.96296 0.97609 1.44179 1.02229 1.01414 1.86374 1.19567 0.98640 0.86487 1.34738 0.90759 1.25839 0.98632 1.02059 0.98338 1.70254 1.20979 1.27645 1.39943 0.85210 0.78394 0.79574 0.76927 1.20702 1.22582 1.19325 1.20546 0.95344 0.86844 0.93979 1.22519 1.02183 0.94388 1.01587 1.22721 0.75626 0.86572 0.87070 1.90568 1.46353 1.63742 1.35575 1.20851 1.07468 0.97341 0.97253 1.21570 0.92882 0.99092 0.88445 1.21532 1.00685 0.94573 1.01260 1.17681 0.95668 0.92220 0.80408 1.91570 1.89935 1.83706 1.45164 1.21099 1.07378 1.04487 0.89505 1.17817 0.95367 0.91161 0.81516 1.91568 1.89576 1.82885 1.46724 0.98282 0.95960 0.94662 0.94297 0.94436 0.94919 0.86631 0.87137 0.80357 0.80069 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.52 8.98 127.77 1.15 9.67 16 2 N -0.62 -30.84 2.92 -726.94 -2.12 -32.97 16 3 C -0.26 -14.28 9.65 84.03 0.81 -13.47 16 4 H 0.07 3.84 7.86 -2.91 -0.02 3.82 16 5 C -0.05 -2.99 5.10 84.86 0.43 -2.55 16 6 N -0.94 -55.85 10.71 21.65 0.23 -55.62 16 7 Si 0.97 44.30 29.57 68.60 2.03 46.32 16 8 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 9 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 C 0.16 6.67 4.93 86.38 0.43 7.10 16 12 C -0.17 -5.10 4.63 29.85 0.14 -4.96 16 13 C 0.40 12.10 7.11 27.93 0.20 12.30 16 14 O -0.48 -18.54 14.97 -3.07 -0.05 -18.59 16 15 C -0.23 -5.26 5.88 -20.12 -0.12 -5.38 16 16 C 0.00 -0.03 9.46 22.56 0.21 0.18 16 17 C -0.16 -1.96 10.00 22.27 0.22 -1.74 16 18 C 0.16 2.38 7.31 22.48 0.16 2.54 16 19 F -0.13 -1.88 17.26 44.97 0.78 -1.10 16 20 C -0.21 -3.58 9.99 22.31 0.22 -3.36 16 21 C 0.16 3.82 7.29 22.72 0.17 3.98 16 22 F -0.13 -3.80 15.55 44.97 0.70 -3.10 16 23 H 0.00 -0.06 7.34 -2.38 -0.02 -0.08 16 24 H 0.02 1.14 7.34 -2.38 -0.02 1.12 16 25 H 0.03 1.42 8.03 -2.39 -0.02 1.40 16 26 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 27 H 0.04 1.58 8.03 -2.38 -0.02 1.56 16 28 H 0.03 1.47 8.00 -2.39 -0.02 1.46 16 29 H 0.12 3.02 8.08 -2.39 -0.02 3.00 16 30 H 0.11 3.16 8.09 -2.39 -0.02 3.14 16 31 H 0.18 1.98 7.05 -2.91 -0.02 1.96 16 32 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -69.08 296.86 6.72 -62.36 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: 1.13 Total: -1.63 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.02 Total: 4.33 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.89 Total: -88.59 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.05 Total: -18.59 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 1.48 Total: -4.21 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.08 6.72 -62.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186935618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.836 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds