Wall clock time and date at job start Mon Mar 30 2020 04:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46468 * 110.99729 * 2 1 4 4 C 1.53249 * 109.79284 * 197.80700 * 3 2 1 5 5 S 1.81908 * 108.50311 * 297.89022 * 4 3 2 6 6 C 1.81900 * 101.86365 * 51.41288 * 5 4 3 7 7 C 1.46473 * 111.00056 * 125.97680 * 2 1 3 8 8 H 1.08991 * 109.41055 * 282.35851 * 7 2 1 9 9 C 1.50707 * 109.40425 * 42.19903 * 7 2 1 10 10 N 1.29947 * 126.28721 * 45.01761 * 9 7 2 11 11 O 1.21306 * 110.24764 * 179.97438 * 10 9 7 12 12 C 1.33645 * 109.81130 * 0.02562 * 11 10 9 13 13 C 1.50696 * 126.55194 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46923 * 269.97414 * 13 12 11 15 15 H 1.08001 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99783 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00267 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 59.99908 * 18 16 14 20 20 H 1.48495 * 109.47589 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47043 * 300.00264 * 18 16 14 22 22 N 1.31136 * 106.89851 * 359.76197 * 12 11 10 23 23 H 1.08997 * 109.47376 * 56.04810 * 1 2 3 24 24 H 1.09000 * 109.46827 * 176.05041 * 1 2 3 25 25 H 1.09000 * 109.47041 * 296.04347 * 1 2 3 26 26 H 1.09002 * 109.40716 * 317.88560 * 3 2 1 27 27 H 1.08997 * 109.41022 * 77.72764 * 3 2 1 28 28 H 1.08995 * 109.63387 * 57.66234 * 4 3 2 29 29 H 1.09000 * 109.63033 * 178.25681 * 4 3 2 30 30 H 1.09002 * 109.63033 * 188.94827 * 6 5 4 31 31 H 1.09001 * 109.62976 * 68.36191 * 6 5 4 32 32 H 1.09007 * 109.46976 * 29.96608 * 13 12 11 33 33 H 1.08996 * 109.47498 * 149.96904 * 13 12 11 34 34 H 0.97004 * 119.99954 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3674 0.0000 4 6 3.4615 1.3600 -0.4410 5 16 4.4205 0.3880 0.7610 6 6 3.4619 -1.1557 0.8434 7 6 1.9939 -0.8033 1.1066 8 1 1.9183 -0.2357 2.0340 9 6 1.1903 -2.0723 1.2294 10 7 0.8243 -2.8483 0.2534 11 8 0.1889 -3.7892 0.6808 12 6 0.0856 -3.6995 2.0102 13 6 -0.6235 -4.6668 2.9225 14 6 -2.0610 -4.2436 3.0836 15 1 -2.4244 -3.3621 2.5763 16 6 -2.9120 -4.9818 3.8784 17 7 -2.4696 -6.0555 4.4956 18 14 -4.6935 -4.4568 4.0786 19 1 -5.3592 -4.4485 2.7512 20 1 -5.3925 -5.4100 4.9775 21 1 -4.7449 -3.0942 4.6666 22 7 0.7242 -2.6120 2.3697 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 -0.3633 0.4512 0.9233 26 1 1.4116 1.9788 -0.6894 27 1 1.9196 1.7839 1.0045 28 1 3.5447 0.9074 -1.4290 29 1 3.8404 2.3816 -0.4698 30 1 3.8400 -1.7787 1.6540 31 1 3.5463 -1.6901 -0.1029 32 1 -0.5855 -5.6673 2.4914 33 1 -0.1350 -4.6722 3.8968 34 1 -3.0682 -6.5746 5.0552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234333023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:58 Heat of formation + Delta-G solvation = 75.162034 kcal Electronic energy + Delta-G solvation = -18493.928245 eV Core-core repulsion = 15556.551790 eV Total energy + Delta-G solvation = -2937.376455 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.91647 -38.72881 -35.19496 -33.93528 -32.46366 -31.08376 -31.02296 -28.46953 -25.31585 -24.85299 -24.10708 -22.71093 -21.99664 -19.78793 -17.70703 -17.31693 -16.54683 -16.24819 -15.64381 -15.63868 -14.78279 -14.59629 -14.26882 -14.07652 -13.51282 -13.19855 -12.62757 -12.52945 -12.32119 -12.26289 -12.07345 -11.76549 -11.41081 -11.25294 -11.10723 -10.91414 -10.81021 -10.39571 -10.21465 -10.03679 -9.84087 -8.99389 -8.65922 -8.64255 -7.89437 -6.29227 -4.35474 1.52964 1.83602 2.25519 2.81516 3.22532 3.26892 3.30045 3.44311 3.69595 4.04091 4.28273 4.51482 4.62761 4.75940 4.88728 4.93544 5.03011 5.10090 5.24815 5.34174 5.40675 5.43148 5.57974 5.72566 5.83431 5.95796 6.44945 6.52496 6.70274 6.76850 7.06473 7.13383 7.63133 7.86723 8.64171 8.85104 9.29646 10.81097 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.004345 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.524963 B = 6443.147818 C = 6787.729101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.078 4.078 5 S -0.260 6.260 6 C -0.065 4.065 7 C 0.188 3.812 8 H 0.083 0.917 9 C 0.157 3.843 10 N -0.384 5.384 11 O 0.064 5.936 12 C 0.240 3.760 13 C 0.101 3.899 14 C -0.526 4.526 15 H 0.060 0.940 16 C 0.068 3.932 17 N -0.887 5.887 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 N -0.504 5.504 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 11.966 -7.956 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.227 4.227 5 S -0.033 6.033 6 C -0.215 4.215 7 C 0.077 3.923 8 H 0.101 0.899 9 C -0.118 4.118 10 N -0.096 5.096 11 O 0.007 5.993 12 C 0.022 3.978 13 C 0.062 3.938 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.200 1.200 22 N -0.238 5.238 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.244 12.347 -8.248 18.039 hybrid contribution -2.397 0.121 0.311 2.420 sum 7.847 12.468 -7.937 16.734 Atomic orbital electron populations 1.22454 0.85437 1.03674 1.00669 1.61148 1.09205 1.12647 1.44113 1.22274 0.94427 0.89094 1.01480 1.23556 0.96187 1.02366 1.00596 1.86924 1.40725 1.17168 1.58457 1.23526 0.94134 0.96946 1.06863 1.19838 0.90765 0.87678 0.94050 0.89906 1.25170 1.01625 0.99638 0.85396 1.74588 1.12452 0.99168 1.23374 1.85305 1.52779 1.36663 1.24548 1.30178 0.91097 0.94225 0.82288 1.18227 0.94130 0.90310 0.91136 1.20729 0.92568 1.12220 1.30925 0.92165 1.24915 0.99345 0.94562 0.94779 1.69909 1.36478 1.15968 1.30066 0.86416 0.83382 0.78581 0.78341 1.19884 1.20876 1.19971 1.71966 1.16362 1.08969 1.26493 0.90848 0.90473 0.95071 0.89148 0.92951 0.88759 0.87242 0.86934 0.88379 0.92290 0.91283 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 8.99 60.06 0.54 0.89 16 2 N -0.55 -7.31 4.55 -236.68 -1.08 -8.39 16 3 C 0.06 0.57 5.43 -3.93 -0.02 0.55 16 4 C -0.08 -0.73 6.68 37.29 0.25 -0.48 16 5 S -0.26 -3.09 22.40 -107.50 -2.41 -5.49 16 6 C -0.07 -0.87 5.94 37.29 0.22 -0.65 16 7 C 0.19 2.83 2.44 -68.97 -0.17 2.66 16 8 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 9 C 0.16 2.91 5.39 -156.37 -0.84 2.07 16 10 N -0.38 -7.51 10.79 30.90 0.33 -7.18 16 11 O 0.06 1.33 11.31 18.09 0.20 1.53 16 12 C 0.24 5.25 7.70 -13.05 -0.10 5.15 16 13 C 0.10 2.41 5.60 -29.03 -0.16 2.24 16 14 C -0.53 -13.81 9.09 -34.44 -0.31 -14.12 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 18 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 N -0.50 -10.68 11.55 -9.86 -0.11 -10.79 16 23 H 0.07 0.84 7.98 -51.93 -0.41 0.43 16 24 H 0.08 1.31 5.65 -51.93 -0.29 1.01 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 27 H 0.05 0.54 7.91 -51.93 -0.41 0.13 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 297.82 15.07 4.49 4.49 Total: -1.00 -27.58 297.82 -7.99 -35.57 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.44 Total: -1.59 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.69 Total: 0.00 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.12 Total: -49.88 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.41 Total: -5.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.58 -7.99 -35.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234333023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.733 kcal (2) G-P(sol) polarization free energy of solvation -27.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds