Wall clock time and date at job start Mon Mar 30 2020 04:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46468 * 110.99729 * 2 1 4 4 C 1.53249 * 109.79284 * 197.80700 * 3 2 1 5 5 S 1.81908 * 108.50311 * 297.89022 * 4 3 2 6 6 C 1.81900 * 101.86365 * 51.41288 * 5 4 3 7 7 C 1.46473 * 111.00056 * 125.97680 * 2 1 3 8 8 H 1.08991 * 109.41055 * 282.35851 * 7 2 1 9 9 C 1.50707 * 109.40425 * 42.19903 * 7 2 1 10 10 N 1.29947 * 126.28721 * 45.01761 * 9 7 2 11 11 O 1.21306 * 110.24764 * 179.97438 * 10 9 7 12 12 C 1.33645 * 109.81130 * 0.02562 * 11 10 9 13 13 C 1.50696 * 126.55194 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46923 * 269.97414 * 13 12 11 15 15 H 1.08001 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99783 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00267 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46949 * 59.99908 * 18 16 14 20 20 H 1.48495 * 109.47589 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47043 * 300.00264 * 18 16 14 22 22 N 1.31136 * 106.89851 * 359.76197 * 12 11 10 23 23 H 1.08997 * 109.47376 * 56.04810 * 1 2 3 24 24 H 1.09000 * 109.46827 * 176.05041 * 1 2 3 25 25 H 1.09000 * 109.47041 * 296.04347 * 1 2 3 26 26 H 1.09002 * 109.40716 * 317.88560 * 3 2 1 27 27 H 1.08997 * 109.41022 * 77.72764 * 3 2 1 28 28 H 1.08995 * 109.63387 * 57.66234 * 4 3 2 29 29 H 1.09000 * 109.63033 * 178.25681 * 4 3 2 30 30 H 1.09002 * 109.63033 * 188.94827 * 6 5 4 31 31 H 1.09001 * 109.62976 * 68.36191 * 6 5 4 32 32 H 1.09007 * 109.46976 * 29.96608 * 13 12 11 33 33 H 1.08996 * 109.47498 * 149.96904 * 13 12 11 34 34 H 0.97004 * 119.99954 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3674 0.0000 4 6 3.4615 1.3600 -0.4410 5 16 4.4205 0.3880 0.7610 6 6 3.4619 -1.1557 0.8434 7 6 1.9939 -0.8033 1.1066 8 1 1.9183 -0.2357 2.0340 9 6 1.1903 -2.0723 1.2294 10 7 0.8243 -2.8483 0.2534 11 8 0.1889 -3.7892 0.6808 12 6 0.0856 -3.6995 2.0102 13 6 -0.6235 -4.6668 2.9225 14 6 -2.0610 -4.2436 3.0836 15 1 -2.4244 -3.3621 2.5763 16 6 -2.9120 -4.9818 3.8784 17 7 -2.4696 -6.0555 4.4956 18 14 -4.6935 -4.4568 4.0786 19 1 -5.3592 -4.4485 2.7512 20 1 -5.3925 -5.4100 4.9775 21 1 -4.7449 -3.0942 4.6666 22 7 0.7242 -2.6120 2.3697 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 -0.3633 0.4512 0.9233 26 1 1.4116 1.9788 -0.6894 27 1 1.9196 1.7839 1.0045 28 1 3.5447 0.9074 -1.4290 29 1 3.8404 2.3816 -0.4698 30 1 3.8400 -1.7787 1.6540 31 1 3.5463 -1.6901 -0.1029 32 1 -0.5855 -5.6673 2.4914 33 1 -0.1350 -4.6722 3.8968 34 1 -3.0682 -6.5746 5.0552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234333023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:57 Heat of formation + Delta-G solvation = 56.207410 kcal Electronic energy + Delta-G solvation = -18494.750179 eV Core-core repulsion = 15556.551790 eV Total energy + Delta-G solvation = -2938.198389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.53611 -39.82755 -36.79291 -35.74421 -34.05377 -32.44347 -31.98528 -30.32423 -26.38916 -26.09090 -26.02223 -24.09080 -23.29920 -21.16881 -19.36640 -18.68088 -18.35341 -17.66217 -16.96195 -16.61739 -16.47569 -15.73964 -15.25263 -15.24035 -15.00788 -14.46525 -14.39796 -14.04379 -13.61960 -13.33057 -13.21600 -13.09330 -12.96192 -12.76221 -12.62340 -12.49726 -12.21249 -12.13279 -11.94685 -11.81142 -10.97893 -10.67773 -10.63110 -9.69736 -8.82684 -8.31485 -6.45070 0.17078 0.60640 1.17009 1.39437 1.44548 1.45111 1.53802 1.96823 2.32466 2.39312 2.67008 3.03275 3.22126 3.50155 3.72174 3.78361 4.02935 4.11157 4.18865 4.30330 4.38048 4.47720 4.60890 4.62355 4.73273 4.81131 4.87549 4.89147 5.08391 5.20404 5.57465 5.57852 5.78307 5.86601 6.58952 7.19616 7.23822 8.79137 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.004345 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.524963 B = 6443.147818 C = 6787.729101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.550 5.550 3 C 0.055 3.945 4 C -0.069 4.069 5 S -0.268 6.268 6 C -0.062 4.062 7 C 0.190 3.810 8 H 0.079 0.921 9 C 0.169 3.831 10 N -0.385 5.385 11 O 0.055 5.945 12 C 0.233 3.767 13 C 0.109 3.891 14 C -0.544 4.544 15 H 0.054 0.946 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.272 1.272 22 N -0.517 5.517 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.027 0.973 26 H 0.118 0.882 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.140 0.860 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 14.062 -8.862 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.276 5.276 3 C -0.073 4.073 4 C -0.217 4.217 5 S -0.041 6.041 6 C -0.211 4.211 7 C 0.078 3.922 8 H 0.097 0.903 9 C -0.106 4.106 10 N -0.098 5.098 11 O 0.001 5.999 12 C 0.015 3.985 13 C 0.070 3.930 14 C -0.583 4.583 15 H 0.072 0.928 16 C -0.178 4.178 17 N -0.553 5.553 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.197 1.197 22 N -0.252 5.252 23 H 0.120 0.880 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.136 0.864 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.158 0.842 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.181 14.435 -9.170 19.903 hybrid contribution -2.301 -0.444 0.542 2.406 sum 7.880 13.991 -8.627 18.228 Atomic orbital electron populations 1.22405 0.85884 1.01906 1.01736 1.61216 1.08870 1.14530 1.42976 1.22433 0.95154 0.87309 1.02441 1.23686 0.95128 1.03355 0.99570 1.86990 1.40947 1.16431 1.59694 1.23376 0.93282 0.98174 1.06308 1.19972 0.91170 0.86254 0.94764 0.90305 1.25770 1.00502 1.00198 0.84148 1.74577 1.12706 0.99165 1.23389 1.85294 1.53268 1.37352 1.23948 1.29710 0.91734 0.94419 0.82643 1.17923 0.93483 0.90620 0.90940 1.20969 0.93837 1.12220 1.31238 0.92819 1.25717 1.03365 0.94448 0.94250 1.69996 1.37991 1.16819 1.30534 0.85440 0.78454 0.78285 0.78574 1.19193 1.20010 1.19666 1.71955 1.16572 1.08919 1.27774 0.88047 0.93869 0.95471 0.86366 0.92812 0.88402 0.84241 0.87437 0.89021 0.92767 0.92669 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 8.99 127.69 1.15 1.90 16 2 N -0.55 -13.67 4.55 -902.72 -4.11 -17.78 16 3 C 0.05 0.93 5.43 86.47 0.47 1.40 16 4 C -0.07 -1.05 6.68 72.07 0.48 -0.57 16 5 S -0.27 -5.82 22.40 -56.49 -1.27 -7.09 16 6 C -0.06 -1.61 5.94 72.06 0.43 -1.18 16 7 C 0.19 5.56 2.44 44.34 0.11 5.67 16 8 H 0.08 2.37 7.91 -2.39 -0.02 2.35 16 9 C 0.17 6.30 5.39 138.46 0.75 7.05 16 10 N -0.39 -15.16 10.79 -60.30 -0.65 -15.81 16 11 O 0.05 2.34 11.31 74.81 0.85 3.19 16 12 C 0.23 10.48 7.70 88.38 0.68 11.16 16 13 C 0.11 5.39 5.60 29.10 0.16 5.55 16 14 C -0.54 -29.07 9.09 25.60 0.23 -28.83 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C 0.02 1.23 5.46 84.65 0.46 1.69 16 17 N -0.92 -50.49 13.29 21.45 0.28 -50.21 16 18 Si 0.97 41.56 29.54 68.60 2.03 43.58 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 N -0.52 -22.28 11.55 -303.17 -3.50 -25.79 16 23 H 0.10 2.05 7.98 -2.39 -0.02 2.04 16 24 H 0.04 1.43 5.65 -2.39 -0.01 1.42 16 25 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.12 1.42 7.85 -2.39 -0.02 1.40 16 27 H 0.05 0.94 7.91 -2.39 -0.02 0.92 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 32 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16 33 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -58.90 297.82 -0.35 -59.25 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.10 Total: 6.83 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 4.92 Total: 3.83 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -7.98 Total: -109.58 kcal Atomic # 8 Polarization: 2.34 SS G_CDS: 0.85 Total: 3.19 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -1.27 Total: -7.09 kcal Total: -58.90 -0.35 -59.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234333023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.454 kcal (2) G-P(sol) polarization free energy of solvation -58.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds