Wall clock time and date at job start Mon Mar 30 2020 04:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46466 * 110.99969 * 2 1 4 4 C 1.53255 * 109.86231 * 162.23272 * 3 2 1 5 5 S 1.81897 * 108.50566 * 61.99896 * 4 3 2 6 6 C 1.81900 * 101.91444 * 308.69404 * 5 4 3 7 7 C 1.46464 * 111.00377 * 234.01323 * 2 1 3 8 8 H 1.09002 * 109.40710 * 77.64981 * 7 2 1 9 9 C 1.50699 * 109.40815 * 317.88935 * 7 2 1 10 10 N 1.29952 * 126.28309 * 314.62257 * 9 7 2 11 11 O 1.21305 * 110.24804 * 179.97438 * 10 9 7 12 12 C 1.33639 * 109.81109 * 359.97438 * 11 10 9 13 13 C 1.50696 * 126.54991 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47647 * 269.98524 * 13 12 11 15 15 H 1.07997 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00017 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99683 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47395 * 89.99614 * 18 16 14 20 20 H 1.48505 * 109.47105 * 209.99647 * 18 16 14 21 21 H 1.48506 * 109.47406 * 329.99345 * 18 16 14 22 22 N 1.31131 * 106.89863 * 359.77348 * 12 11 10 23 23 H 1.09001 * 109.47203 * 185.98288 * 1 2 3 24 24 H 1.08996 * 109.47620 * 305.98532 * 1 2 3 25 25 H 1.09002 * 109.46791 * 65.98590 * 1 2 3 26 26 H 1.09003 * 109.40140 * 282.34828 * 3 2 1 27 27 H 1.08997 * 109.41170 * 42.18496 * 3 2 1 28 28 H 1.08990 * 109.63002 * 181.70583 * 4 3 2 29 29 H 1.09002 * 109.62548 * 302.09606 * 4 3 2 30 30 H 1.08998 * 109.63767 * 291.60132 * 6 5 4 31 31 H 1.09005 * 109.62935 * 171.00597 * 6 5 4 32 32 H 1.09004 * 109.47305 * 29.98543 * 13 12 11 33 33 H 1.08997 * 109.47301 * 149.98081 * 13 12 11 34 34 H 0.97002 * 120.00187 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3674 0.0000 4 6 3.4619 1.3616 0.4398 5 16 4.4205 0.3879 -0.7609 6 6 3.4620 -1.1559 -0.8431 7 6 1.9939 -0.8034 -1.1064 8 1 1.9185 -0.2358 -2.0339 9 6 1.1890 -2.0714 -1.2304 10 7 0.8270 -2.8509 -0.2557 11 8 0.1883 -3.7892 -0.6836 12 6 0.0785 -3.6942 -2.0121 13 6 -0.6364 -4.6570 -2.9247 14 6 0.3248 -5.7240 -3.3817 15 1 1.3509 -5.7064 -3.0453 16 6 -0.1055 -6.7220 -4.2301 17 7 -1.3549 -6.7432 -4.6402 18 14 1.0861 -8.0441 -4.7971 19 1 1.0532 -9.1822 -3.8437 20 1 0.6927 -8.5186 -6.1482 21 1 2.4599 -7.4825 -4.8503 22 7 0.7081 -2.6008 -2.3694 23 1 -0.3634 -1.0221 0.1071 24 1 -0.3634 0.6038 0.8315 25 1 -0.3633 0.4182 -0.9388 26 1 1.9183 1.7842 -1.0043 27 1 1.4125 1.9786 0.6903 28 1 3.8398 2.3835 0.4676 29 1 3.5457 0.9131 1.4298 30 1 3.5463 -1.6902 0.1032 31 1 3.8400 -1.7789 -1.6537 32 1 -1.4644 -5.1199 -2.3878 33 1 -1.0208 -4.1190 -3.7912 34 1 -1.6577 -7.4456 -5.2367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234364200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:01 Heat of formation + Delta-G solvation = 75.032099 kcal Electronic energy + Delta-G solvation = -18460.246586 eV Core-core repulsion = 15522.864497 eV Total energy + Delta-G solvation = -2937.382089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.91649 -38.74543 -35.19614 -33.93236 -32.46212 -31.07840 -31.04161 -28.46674 -25.34899 -24.85537 -24.10270 -22.72167 -22.00212 -19.78786 -17.66819 -17.38155 -16.41194 -16.38438 -15.66382 -15.60877 -14.77219 -14.60276 -14.27229 -14.08152 -13.52443 -13.19336 -12.65262 -12.51567 -12.32823 -12.27010 -12.11654 -11.78162 -11.38668 -11.22692 -11.14006 -10.90312 -10.82096 -10.39811 -10.15353 -10.06760 -9.82019 -8.99103 -8.67015 -8.64903 -7.87942 -6.28799 -4.34809 1.54054 1.83628 2.26840 2.82244 3.22188 3.28736 3.33130 3.42284 3.69580 4.03667 4.29536 4.50701 4.63568 4.75545 4.86704 4.92661 5.04127 5.11151 5.23758 5.32346 5.35433 5.41221 5.57974 5.73242 5.80930 5.90659 6.44842 6.51751 6.68867 6.74551 7.06226 7.13095 7.64386 7.87187 8.65423 8.85072 9.30535 10.81578 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031650 B = 0.004453 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.461866 B = 6286.096006 C = 6873.945458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.057 3.943 4 C -0.079 4.079 5 S -0.259 6.259 6 C -0.066 4.066 7 C 0.189 3.811 8 H 0.083 0.917 9 C 0.157 3.843 10 N -0.384 5.384 11 O 0.064 5.936 12 C 0.240 3.760 13 C 0.101 3.899 14 C -0.525 4.525 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.906 3.094 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.272 1.272 22 N -0.504 5.504 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 14.327 8.435 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.228 4.228 5 S -0.031 6.031 6 C -0.216 4.216 7 C 0.078 3.922 8 H 0.101 0.899 9 C -0.118 4.118 10 N -0.096 5.096 11 O 0.007 5.993 12 C 0.022 3.978 13 C 0.062 3.938 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.196 1.196 22 N -0.238 5.238 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.375 14.779 8.740 18.315 hybrid contribution -0.814 -0.879 -0.502 1.299 sum 5.561 13.900 8.238 17.088 Atomic orbital electron populations 1.22436 0.85619 1.03533 1.00528 1.61122 1.09084 1.12675 1.44277 1.22270 0.94484 0.89021 1.01440 1.23549 0.96181 1.02395 1.00688 1.86939 1.40739 1.17094 1.58356 1.23538 0.94084 0.96927 1.07009 1.19830 0.90828 0.87645 0.93933 0.89909 1.25164 1.01719 0.99510 0.85450 1.74587 1.12527 0.99021 1.23441 1.85302 1.52638 1.36795 1.24551 1.30175 0.92615 0.92787 0.82221 1.18228 0.94905 0.89811 0.90865 1.20780 0.96344 1.09145 1.30110 0.92040 1.24917 0.95547 0.97800 0.95357 1.69915 1.15238 1.33868 1.33465 0.86355 0.80951 0.81280 0.78130 1.20228 1.20825 1.19645 1.71958 1.16005 1.09515 1.26305 0.90590 0.90880 0.95168 0.92974 0.89186 0.87250 0.88783 0.88347 0.86806 0.92321 0.91313 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 8.95 60.06 0.54 0.88 16 2 N -0.55 -7.12 4.56 -236.68 -1.08 -8.19 16 3 C 0.06 0.56 5.42 -3.93 -0.02 0.54 16 4 C -0.08 -0.74 6.69 37.29 0.25 -0.49 16 5 S -0.26 -3.15 22.40 -107.50 -2.41 -5.56 16 6 C -0.07 -0.93 5.95 37.29 0.22 -0.70 16 7 C 0.19 2.84 2.44 -68.97 -0.17 2.68 16 8 H 0.08 1.26 7.91 -51.93 -0.41 0.85 16 9 C 0.16 2.91 5.40 -156.37 -0.85 2.07 16 10 N -0.38 -7.51 10.80 30.90 0.33 -7.18 16 11 O 0.06 1.33 11.31 18.11 0.20 1.54 16 12 C 0.24 5.25 7.70 -13.06 -0.10 5.15 16 13 C 0.10 2.41 5.60 -29.04 -0.16 2.24 16 14 C -0.52 -13.86 9.09 -34.44 -0.31 -14.18 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.32 13.29 55.43 0.74 -23.58 16 18 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 N -0.50 -10.68 11.55 -9.87 -0.11 -10.80 16 23 H 0.08 1.18 5.75 -51.93 -0.30 0.88 16 24 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.52 7.91 -51.93 -0.41 0.11 16 27 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 28 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 297.84 15.07 4.49 4.49 Total: -1.00 -27.76 297.84 -8.00 -35.75 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.44 Total: -1.85 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.70 Total: -0.13 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.12 Total: -49.75 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.41 Total: -5.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.76 -8.00 -35.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234364200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.786 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds