Wall clock time and date at job start Mon Mar 30 2020 04:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46466 * 110.99969 * 2 1 4 4 C 1.53255 * 109.86231 * 162.23272 * 3 2 1 5 5 S 1.81897 * 108.50566 * 61.99896 * 4 3 2 6 6 C 1.81900 * 101.91444 * 308.69404 * 5 4 3 7 7 C 1.46464 * 111.00377 * 234.01323 * 2 1 3 8 8 H 1.09002 * 109.40710 * 77.64981 * 7 2 1 9 9 C 1.50699 * 109.40815 * 317.88935 * 7 2 1 10 10 N 1.29952 * 126.28309 * 314.62257 * 9 7 2 11 11 O 1.21305 * 110.24804 * 179.97438 * 10 9 7 12 12 C 1.33639 * 109.81109 * 359.97438 * 11 10 9 13 13 C 1.50696 * 126.54991 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47647 * 269.98524 * 13 12 11 15 15 H 1.07997 * 119.99872 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00017 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99683 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47395 * 89.99614 * 18 16 14 20 20 H 1.48505 * 109.47105 * 209.99647 * 18 16 14 21 21 H 1.48506 * 109.47406 * 329.99345 * 18 16 14 22 22 N 1.31131 * 106.89863 * 359.77348 * 12 11 10 23 23 H 1.09001 * 109.47203 * 185.98288 * 1 2 3 24 24 H 1.08996 * 109.47620 * 305.98532 * 1 2 3 25 25 H 1.09002 * 109.46791 * 65.98590 * 1 2 3 26 26 H 1.09003 * 109.40140 * 282.34828 * 3 2 1 27 27 H 1.08997 * 109.41170 * 42.18496 * 3 2 1 28 28 H 1.08990 * 109.63002 * 181.70583 * 4 3 2 29 29 H 1.09002 * 109.62548 * 302.09606 * 4 3 2 30 30 H 1.08998 * 109.63767 * 291.60132 * 6 5 4 31 31 H 1.09005 * 109.62935 * 171.00597 * 6 5 4 32 32 H 1.09004 * 109.47305 * 29.98543 * 13 12 11 33 33 H 1.08997 * 109.47301 * 149.98081 * 13 12 11 34 34 H 0.97002 * 120.00187 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3674 0.0000 4 6 3.4619 1.3616 0.4398 5 16 4.4205 0.3879 -0.7609 6 6 3.4620 -1.1559 -0.8431 7 6 1.9939 -0.8034 -1.1064 8 1 1.9185 -0.2358 -2.0339 9 6 1.1890 -2.0714 -1.2304 10 7 0.8270 -2.8509 -0.2557 11 8 0.1883 -3.7892 -0.6836 12 6 0.0785 -3.6942 -2.0121 13 6 -0.6364 -4.6570 -2.9247 14 6 0.3248 -5.7240 -3.3817 15 1 1.3509 -5.7064 -3.0453 16 6 -0.1055 -6.7220 -4.2301 17 7 -1.3549 -6.7432 -4.6402 18 14 1.0861 -8.0441 -4.7971 19 1 1.0532 -9.1822 -3.8437 20 1 0.6927 -8.5186 -6.1482 21 1 2.4599 -7.4825 -4.8503 22 7 0.7081 -2.6008 -2.3694 23 1 -0.3634 -1.0221 0.1071 24 1 -0.3634 0.6038 0.8315 25 1 -0.3633 0.4182 -0.9388 26 1 1.9183 1.7842 -1.0043 27 1 1.4125 1.9786 0.6903 28 1 3.8398 2.3835 0.4676 29 1 3.5457 0.9131 1.4298 30 1 3.5463 -1.6902 0.1032 31 1 3.8400 -1.7789 -1.6537 32 1 -1.4644 -5.1199 -2.3878 33 1 -1.0208 -4.1190 -3.7912 34 1 -1.6577 -7.4456 -5.2367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234364200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:01 Heat of formation + Delta-G solvation = 55.897229 kcal Electronic energy + Delta-G solvation = -18461.076336 eV Core-core repulsion = 15522.864497 eV Total energy + Delta-G solvation = -2938.211839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.53685 -39.82269 -36.79246 -35.74418 -34.05489 -32.44678 -31.97750 -30.32532 -26.38774 -26.09944 -26.01505 -24.10109 -23.29016 -21.16364 -19.33357 -18.76899 -18.30027 -17.67958 -16.95970 -16.61301 -16.45531 -15.74160 -15.29239 -15.21395 -15.00230 -14.47351 -14.41289 -14.02616 -13.61095 -13.33321 -13.21121 -13.10147 -12.92731 -12.74532 -12.62736 -12.52754 -12.22291 -12.13479 -11.94958 -11.79025 -10.98366 -10.68027 -10.63244 -9.68145 -8.83644 -8.31985 -6.45245 0.16885 0.59129 1.16791 1.40266 1.43587 1.44855 1.55226 1.96964 2.31437 2.39841 2.67412 3.02968 3.22032 3.50307 3.72183 3.78046 4.02576 4.11836 4.19151 4.32135 4.38168 4.48842 4.60222 4.62842 4.73254 4.82166 4.87778 4.89218 5.08065 5.20293 5.57812 5.59490 5.79661 5.86570 6.59118 7.19543 7.23814 8.78833 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031650 B = 0.004453 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.461866 B = 6286.096006 C = 6873.945458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.551 5.551 3 C 0.056 3.944 4 C -0.070 4.070 5 S -0.269 6.269 6 C -0.064 4.064 7 C 0.192 3.808 8 H 0.081 0.919 9 C 0.169 3.831 10 N -0.385 5.385 11 O 0.055 5.945 12 C 0.233 3.767 13 C 0.109 3.891 14 C -0.544 4.544 15 H 0.053 0.947 16 C 0.024 3.976 17 N -0.915 5.915 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.272 1.272 22 N -0.517 5.517 23 H 0.044 0.956 24 H 0.102 0.898 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 15.722 9.202 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.278 5.278 3 C -0.073 4.073 4 C -0.218 4.218 5 S -0.041 6.041 6 C -0.214 4.214 7 C 0.080 3.920 8 H 0.098 0.902 9 C -0.106 4.106 10 N -0.098 5.098 11 O 0.002 5.998 12 C 0.015 3.985 13 C 0.071 3.929 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.177 4.177 17 N -0.553 5.553 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.197 1.197 22 N -0.252 5.252 23 H 0.063 0.937 24 H 0.120 0.880 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.352 16.172 9.523 20.156 hybrid contribution -1.116 -1.181 -0.677 1.761 sum 6.236 14.991 8.846 18.489 Atomic orbital electron populations 1.22411 0.85619 1.02123 1.01719 1.61182 1.09152 1.14479 1.42954 1.22429 0.95010 0.87301 1.02511 1.23695 0.95312 1.03278 0.99522 1.86996 1.41087 1.16277 1.59761 1.23375 0.93699 0.98208 1.06092 1.19939 0.90889 0.86301 0.94848 0.90163 1.25768 1.00591 1.00083 0.84199 1.74577 1.12784 0.99015 1.23470 1.85292 1.53122 1.37473 1.23950 1.29708 0.93241 0.92990 0.82581 1.17919 0.94631 0.89629 0.90747 1.21008 0.96374 1.10226 1.30671 0.92882 1.25701 0.97106 0.99693 0.95217 1.69994 1.16673 1.34734 1.33914 0.85393 0.78651 0.78698 0.78025 1.19326 1.19984 1.19674 1.71947 1.16208 1.09485 1.27570 0.93688 0.87958 0.95275 0.92724 0.86176 0.84194 0.88471 0.89185 0.87924 0.92720 0.92641 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 8.95 127.69 1.14 1.84 16 2 N -0.55 -13.27 4.56 -902.72 -4.11 -17.39 16 3 C 0.06 0.90 5.42 86.47 0.47 1.37 16 4 C -0.07 -1.06 6.69 72.07 0.48 -0.58 16 5 S -0.27 -6.05 22.40 -56.49 -1.27 -7.32 16 6 C -0.06 -1.76 5.95 72.07 0.43 -1.33 16 7 C 0.19 5.62 2.44 44.34 0.11 5.73 16 8 H 0.08 2.39 7.91 -2.39 -0.02 2.37 16 9 C 0.17 6.30 5.40 138.46 0.75 7.05 16 10 N -0.39 -15.18 10.80 -60.30 -0.65 -15.83 16 11 O 0.06 2.35 11.31 74.86 0.85 3.20 16 12 C 0.23 10.48 7.70 88.38 0.68 11.16 16 13 C 0.11 5.41 5.60 29.10 0.16 5.57 16 14 C -0.54 -29.26 9.09 25.60 0.23 -29.02 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.02 1.27 5.46 84.66 0.46 1.73 16 17 N -0.92 -50.50 13.29 21.45 0.28 -50.22 16 18 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 N -0.52 -22.30 11.55 -303.18 -3.50 -25.80 16 23 H 0.04 1.37 5.75 -2.39 -0.01 1.36 16 24 H 0.10 1.83 7.93 -2.39 -0.02 1.82 16 25 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.91 7.91 -2.39 -0.02 0.89 16 27 H 0.12 1.31 7.82 -2.39 -0.02 1.29 16 28 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.05 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -59.34 297.84 -0.35 -59.69 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.10 Total: 6.17 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 4.92 Total: 3.52 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -7.98 Total: -109.24 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.85 Total: 3.20 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -1.27 Total: -7.32 kcal Total: -59.34 -0.35 -59.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234364200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.591 kcal (2) G-P(sol) polarization free energy of solvation -59.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds