Wall clock time and date at job start Mon Mar 30 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.42898 * 109.47318 * 299.99836 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47081 * 185.00082 * 12 9 7 14 14 N 1.31041 * 126.46318 * 90.00238 * 13 12 9 15 15 C 1.35023 * 105.59017 * 179.97438 * 14 13 12 16 16 N 1.38852 * 126.38544 * 179.97438 * 15 14 13 17 17 C 1.47008 * 111.00119 * 303.63221 * 16 15 14 18 18 C 1.53099 * 109.25798 * 177.60738 * 17 16 15 19 19 O 1.43016 * 109.25617 * 56.84769 * 18 17 16 20 20 C 1.43007 * 113.74046 * 301.32882 * 19 18 17 21 21 C 1.47020 * 110.99677 * 179.97438 * 16 15 14 22 22 N 1.30634 * 107.22884 * 359.97438 * 15 14 13 23 23 O 1.21293 * 110.12135 * 359.72992 * 22 15 14 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 0.96706 * 114.00468 * 300.00132 * 11 9 7 26 26 H 1.09001 * 109.47114 * 304.99535 * 12 9 7 27 27 H 1.08999 * 109.47369 * 64.99728 * 12 9 7 28 28 H 1.09002 * 109.50625 * 297.54454 * 17 16 15 29 29 H 1.09000 * 109.50610 * 57.67071 * 17 16 15 30 30 H 1.08994 * 109.50651 * 296.91646 * 18 17 16 31 31 H 1.08997 * 109.53917 * 176.80258 * 18 17 16 32 32 H 1.09001 * 109.50809 * 298.73892 * 20 19 18 33 33 H 1.09003 * 109.54472 * 178.62526 * 20 19 18 34 34 H 1.09004 * 109.50632 * 302.32635 * 21 16 15 35 35 H 1.08997 * 109.50718 * 62.41547 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 0.4244 -2.5720 1.1693 12 6 2.2450 -3.6621 0.0134 13 6 1.4961 -4.9640 -0.1104 14 7 1.1837 -5.5799 -1.2241 15 6 0.5231 -6.6960 -0.8486 16 7 -0.0043 -7.6642 -1.6926 17 6 -0.9437 -7.0697 -2.6544 18 6 -1.4544 -8.1592 -3.6010 19 8 -2.0549 -9.2066 -2.8343 20 6 -1.1678 -9.8085 -1.8878 21 6 -0.6538 -8.7360 -0.9238 22 7 0.4728 -6.6951 0.4568 23 8 1.0311 -5.7116 0.8952 24 1 -0.4851 -0.8400 -0.0004 25 1 0.9131 -2.5247 2.0025 26 1 2.9329 -3.5576 -0.8256 27 1 2.8070 -3.6537 0.9473 28 1 -1.7846 -6.6303 -2.1177 29 1 -0.4347 -6.2966 -3.2300 30 1 -0.6206 -8.5615 -4.1764 31 1 -2.1941 -7.7350 -4.2798 32 1 -0.3256 -10.2587 -2.4135 33 1 -1.6997 -10.5771 -1.3270 34 1 0.0670 -9.1791 -0.2365 35 1 -1.4895 -8.3234 -0.3586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236510347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:44 Heat of formation + Delta-G solvation = -19.502408 kcal Electronic energy + Delta-G solvation = -20745.131303 eV Core-core repulsion = 17360.897019 eV Total energy + Delta-G solvation = -3384.234284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.13285 -39.98029 -36.72367 -36.71015 -34.57052 -32.34848 -32.21202 -31.58457 -29.45564 -27.63666 -25.50913 -24.40371 -23.21845 -22.33727 -21.38410 -20.39010 -18.04888 -17.80495 -17.32198 -16.56141 -16.25815 -15.52122 -15.39574 -15.05921 -14.87604 -14.72002 -14.23400 -13.85115 -13.73673 -12.86969 -12.73885 -12.36712 -11.97036 -11.89346 -11.72972 -11.61159 -11.23781 -11.03362 -10.83601 -10.69565 -10.46213 -10.21491 -10.16453 -9.96490 -9.44760 -8.74374 -8.59230 -8.25406 -6.47981 -4.34403 1.48528 2.39135 2.95224 3.27468 3.37940 3.38381 3.53339 3.57687 4.15208 4.42058 4.48113 4.52357 4.76900 4.81707 4.92548 4.96927 5.21601 5.24883 5.32273 5.49876 5.51635 5.61345 5.67997 5.70241 5.84280 5.96980 6.15811 6.35062 6.38946 6.75597 6.77687 7.20511 7.75705 8.19445 8.51288 8.71057 8.91100 9.52034 10.92005 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037067 B = 0.004014 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.210335 B = 6973.438589 C = 7319.405953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.037 3.963 3 Si 1.069 2.931 4 H -0.286 1.286 5 H -0.282 1.282 6 H -0.286 1.286 7 C -0.653 4.653 8 H 0.056 0.944 9 C 0.220 3.780 10 H 0.058 0.942 11 O -0.581 6.581 12 C -0.054 4.054 13 C 0.231 3.769 14 N -0.497 5.497 15 C 0.340 3.660 16 N -0.436 5.436 17 C 0.024 3.976 18 C 0.066 3.934 19 O -0.384 6.384 20 C 0.066 3.934 21 C 0.023 3.977 22 N -0.425 5.425 23 O 0.071 5.929 24 H 0.284 0.716 25 H 0.359 0.641 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -15.480 -3.319 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.173 4.173 3 Si 0.897 3.103 4 H -0.213 1.213 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.691 4.691 8 H 0.075 0.925 9 C 0.162 3.838 10 H 0.075 0.925 11 O -0.386 6.386 12 C -0.094 4.094 13 C 0.011 3.989 14 N -0.234 5.234 15 C -0.022 4.022 16 N -0.162 5.162 17 C -0.103 4.103 18 C -0.011 4.011 19 O -0.302 6.302 20 C -0.011 4.011 21 C -0.105 4.105 22 N -0.145 5.145 23 O 0.020 5.980 24 H 0.096 0.904 25 H 0.205 0.795 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.383 -14.848 -4.043 15.393 hybrid contribution 0.594 -1.159 0.853 1.556 sum 0.211 -16.007 -3.190 16.323 Atomic orbital electron populations 1.70645 1.07001 1.32349 1.42005 1.25843 0.96412 1.02588 0.92414 0.83559 0.74937 0.75183 0.76659 1.21273 1.20697 1.21238 1.22311 0.94564 0.91700 1.60480 0.92546 1.19609 0.88054 0.89921 0.86219 0.92473 1.86525 1.39453 1.96347 1.16285 1.21425 0.98515 0.84318 1.05123 1.29171 0.93313 0.96011 0.80406 1.71867 1.18329 1.06029 1.27143 1.23693 0.98984 0.92211 0.87280 1.58842 1.35125 1.07641 1.14581 1.22967 0.94320 0.98455 0.94605 1.22734 0.98676 0.87010 0.92655 1.88004 1.38309 1.51322 1.52553 1.22706 0.94111 0.94070 0.90204 1.22867 0.99110 0.92239 0.96268 1.74891 1.20172 1.07645 1.11746 1.85233 1.52759 1.24140 1.35878 0.90401 0.79548 0.87145 0.88625 0.92627 0.87625 0.91619 0.87386 0.91800 0.87556 0.88572 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.53 55.43 0.75 -25.38 16 2 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 3 Si 1.07 23.70 29.90 -169.99 -5.08 18.61 16 4 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.65 -16.83 8.76 -34.44 -0.30 -17.14 16 8 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 9 C 0.22 5.17 2.42 -27.88 -0.07 5.11 16 10 H 0.06 1.51 8.01 -51.93 -0.42 1.09 16 11 O -0.58 -13.82 11.76 -35.23 -0.41 -14.23 16 12 C -0.05 -1.01 5.46 -27.88 -0.15 -1.17 16 13 C 0.23 4.41 7.52 -12.99 -0.10 4.31 16 14 N -0.50 -9.68 11.39 -12.67 -0.14 -9.82 16 15 C 0.34 6.16 7.38 -321.17 -2.37 3.79 16 16 N -0.44 -6.51 4.80 -176.32 -0.85 -7.35 16 17 C 0.02 0.31 5.57 -3.71 -0.02 0.29 16 18 C 0.07 0.68 7.01 37.21 0.26 0.94 16 19 O -0.38 -4.39 10.83 -35.23 -0.38 -4.77 16 20 C 0.07 0.64 7.01 37.21 0.26 0.90 16 21 C 0.02 0.28 5.02 -3.71 -0.02 0.26 16 22 N -0.42 -7.95 11.27 28.63 0.32 -7.63 16 23 O 0.07 1.36 11.30 18.07 0.20 1.56 16 24 H 0.28 8.57 6.47 -40.82 -0.26 8.31 16 25 H 0.36 7.39 9.04 45.56 0.41 7.80 16 26 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 27 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.45 8.00 -51.93 -0.42 1.03 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 300.09 15.07 4.52 4.52 Total: -1.00 -31.56 300.09 -7.36 -38.92 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.69 Total: 7.35 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.60 Total: -1.78 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.08 Total: -50.18 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.59 Total: -17.44 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.08 Total: 18.61 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.56 -7.36 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236510347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.415 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds