Wall clock time and date at job start Mon Mar 30 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.42898 * 109.47318 * 299.99836 * 9 7 2 12 12 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47081 * 185.00082 * 12 9 7 14 14 N 1.31041 * 126.46318 * 90.00238 * 13 12 9 15 15 C 1.35023 * 105.59017 * 179.97438 * 14 13 12 16 16 N 1.38852 * 126.38544 * 179.97438 * 15 14 13 17 17 C 1.47008 * 111.00119 * 303.63221 * 16 15 14 18 18 C 1.53099 * 109.25798 * 177.60738 * 17 16 15 19 19 O 1.43016 * 109.25617 * 56.84769 * 18 17 16 20 20 C 1.43007 * 113.74046 * 301.32882 * 19 18 17 21 21 C 1.47020 * 110.99677 * 179.97438 * 16 15 14 22 22 N 1.30634 * 107.22884 * 359.97438 * 15 14 13 23 23 O 1.21293 * 110.12135 * 359.72992 * 22 15 14 24 24 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 25 25 H 0.96706 * 114.00468 * 300.00132 * 11 9 7 26 26 H 1.09001 * 109.47114 * 304.99535 * 12 9 7 27 27 H 1.08999 * 109.47369 * 64.99728 * 12 9 7 28 28 H 1.09002 * 109.50625 * 297.54454 * 17 16 15 29 29 H 1.09000 * 109.50610 * 57.67071 * 17 16 15 30 30 H 1.08994 * 109.50651 * 296.91646 * 18 17 16 31 31 H 1.08997 * 109.53917 * 176.80258 * 18 17 16 32 32 H 1.09001 * 109.50809 * 298.73892 * 20 19 18 33 33 H 1.09003 * 109.54472 * 178.62526 * 20 19 18 34 34 H 1.09004 * 109.50632 * 302.32635 * 21 16 15 35 35 H 1.08997 * 109.50718 * 62.41547 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 0.4244 -2.5720 1.1693 12 6 2.2450 -3.6621 0.0134 13 6 1.4961 -4.9640 -0.1104 14 7 1.1837 -5.5799 -1.2241 15 6 0.5231 -6.6960 -0.8486 16 7 -0.0043 -7.6642 -1.6926 17 6 -0.9437 -7.0697 -2.6544 18 6 -1.4544 -8.1592 -3.6010 19 8 -2.0549 -9.2066 -2.8343 20 6 -1.1678 -9.8085 -1.8878 21 6 -0.6538 -8.7360 -0.9238 22 7 0.4728 -6.6951 0.4568 23 8 1.0311 -5.7116 0.8952 24 1 -0.4851 -0.8400 -0.0004 25 1 0.9131 -2.5247 2.0025 26 1 2.9329 -3.5576 -0.8256 27 1 2.8070 -3.6537 0.9473 28 1 -1.7846 -6.6303 -2.1177 29 1 -0.4347 -6.2966 -3.2300 30 1 -0.6206 -8.5615 -4.1764 31 1 -2.1941 -7.7350 -4.2798 32 1 -0.3256 -10.2587 -2.4135 33 1 -1.6997 -10.5771 -1.3270 34 1 0.0670 -9.1791 -0.2365 35 1 -1.4895 -8.3234 -0.3586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236510347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:44 Heat of formation + Delta-G solvation = -44.654078 kcal Electronic energy + Delta-G solvation = -20746.221961 eV Core-core repulsion = 17360.897019 eV Total energy + Delta-G solvation = -3385.324942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.59830 -40.97899 -38.55655 -37.86147 -35.99565 -34.32034 -33.75073 -32.53692 -31.07194 -28.69528 -27.33567 -25.56789 -24.55690 -23.95720 -22.83890 -21.56913 -19.66142 -19.24065 -19.01995 -17.74705 -17.34468 -17.05205 -16.36875 -16.32808 -16.07168 -15.89041 -15.79108 -15.62149 -15.23736 -14.69546 -13.99528 -13.75772 -13.62270 -13.14368 -12.88138 -12.81377 -12.57235 -12.53121 -12.29556 -12.17527 -11.92133 -11.89692 -11.77792 -11.22303 -10.88159 -10.62798 -10.22157 -9.98347 -8.61519 -6.48203 0.00047 0.97336 1.59833 1.66689 1.66908 1.81822 1.85386 2.60005 2.73629 2.79719 3.17723 3.27132 3.59018 3.72349 3.83115 3.89873 4.00873 4.03489 4.15251 4.18910 4.29257 4.39654 4.50907 4.60811 4.66456 4.74759 4.80072 4.83842 5.22434 5.31914 5.46072 5.76648 5.96193 6.13631 6.53075 7.04179 7.13219 7.48829 8.76383 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037067 B = 0.004014 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.210335 B = 6973.438589 C = 7319.405953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 1.117 2.883 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.654 4.654 8 H 0.071 0.929 9 C 0.222 3.778 10 H 0.019 0.981 11 O -0.595 6.595 12 C -0.039 4.039 13 C 0.228 3.772 14 N -0.514 5.514 15 C 0.338 3.662 16 N -0.437 5.437 17 C 0.023 3.977 18 C 0.073 3.927 19 O -0.395 6.395 20 C 0.071 3.929 21 C 0.022 3.978 22 N -0.434 5.434 23 O 0.065 5.935 24 H 0.265 0.735 25 H 0.372 0.628 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.038 0.962 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 -16.444 -3.651 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.691 4.691 8 H 0.089 0.911 9 C 0.163 3.837 10 H 0.036 0.964 11 O -0.402 6.402 12 C -0.078 4.078 13 C 0.008 3.992 14 N -0.251 5.251 15 C -0.023 4.023 16 N -0.163 5.163 17 C -0.104 4.104 18 C -0.004 4.004 19 O -0.314 6.314 20 C -0.006 4.006 21 C -0.105 4.105 22 N -0.156 5.156 23 O 0.016 5.984 24 H 0.076 0.924 25 H 0.220 0.780 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.057 0.943 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.096 0.904 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.871 -15.837 -4.363 16.450 hybrid contribution 0.196 -0.951 0.946 1.355 sum 1.067 -16.788 -3.417 17.166 Atomic orbital electron populations 1.70792 1.08369 1.31159 1.45472 1.27328 0.96316 1.06663 0.91521 0.82945 0.74035 0.70938 0.78223 1.19345 1.21857 1.18896 1.22732 0.95414 0.92455 1.58516 0.91113 1.19373 0.87996 0.91416 0.84897 0.96358 1.86474 1.40220 1.96478 1.17046 1.21200 0.97232 0.82203 1.07204 1.29177 0.93317 0.96210 0.80511 1.71856 1.18883 1.06766 1.27565 1.24127 0.98487 0.92232 0.87499 1.59031 1.35655 1.07212 1.14418 1.23061 0.93225 0.99623 0.94516 1.22828 0.99737 0.85905 0.91889 1.87997 1.39157 1.51378 1.52833 1.22871 0.94751 0.93296 0.89688 1.23022 0.98479 0.92080 0.96963 1.74874 1.20712 1.07839 1.12145 1.85210 1.52944 1.24339 1.35940 0.92422 0.78002 0.86017 0.85740 0.94312 0.88500 0.90208 0.85196 0.90379 0.84869 0.88266 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.49 13.53 21.45 0.29 -55.20 16 2 C -0.02 -0.87 5.40 84.66 0.46 -0.42 16 3 Si 1.12 46.81 29.90 68.60 2.05 48.86 16 4 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.65 -33.22 8.76 25.60 0.22 -32.99 16 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.22 10.47 2.42 29.85 0.07 10.54 16 10 H 0.02 1.01 8.01 -2.39 -0.02 0.99 16 11 O -0.60 -28.64 11.76 -148.98 -1.75 -30.39 16 12 C -0.04 -1.42 5.46 29.85 0.16 -1.26 16 13 C 0.23 8.63 7.52 88.36 0.66 9.30 16 14 N -0.51 -20.01 11.39 -311.43 -3.55 -23.55 16 15 C 0.34 12.22 7.38 260.91 1.93 14.15 16 16 N -0.44 -12.77 4.80 -714.56 -3.43 -16.20 16 17 C 0.02 0.59 5.57 86.32 0.48 1.07 16 18 C 0.07 1.37 7.01 72.02 0.50 1.87 16 19 O -0.40 -8.17 10.83 -148.98 -1.61 -9.78 16 20 C 0.07 1.21 7.01 72.01 0.50 1.71 16 21 C 0.02 0.51 5.02 86.31 0.43 0.95 16 22 N -0.43 -16.22 11.27 -66.68 -0.75 -16.97 16 23 O 0.06 2.46 11.30 74.74 0.84 3.30 16 24 H 0.27 16.61 6.47 -92.71 -0.60 16.01 16 25 H 0.37 15.25 9.04 -74.05 -0.67 14.58 16 26 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 27 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 2.27 8.05 -2.38 -0.02 2.26 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.41 300.09 -1.86 -70.26 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.62 Total: 24.73 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.43 Total: 4.92 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -7.44 Total: -111.92 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -2.52 Total: -36.86 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.05 Total: 48.86 kcal Total: -68.41 -1.86 -70.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236510347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.609 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds