Wall clock time and date at job start Mon Mar 30 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47533 * 240.00388 * 3 2 1 5 5 H 1.48504 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47203 * 119.99868 * 3 2 1 7 7 C 1.37882 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99665 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00243 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47337 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00217 * 89.99915 * 10 9 7 12 12 O 1.21282 * 119.99749 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00187 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.47195 * 185.72289 * 13 11 10 15 15 C 1.52996 * 115.55082 * 279.49802 * 14 13 11 16 16 S 1.81395 * 109.47401 * 294.53571 * 15 14 13 17 17 C 1.52998 * 117.49798 * 133.79083 * 14 13 11 18 18 C 1.52991 * 60.00269 * 252.51187 * 17 14 13 19 19 C 1.46502 * 120.00107 * 270.00127 * 10 9 7 20 20 C 1.52994 * 117.49677 * 8.74412 * 19 10 9 21 21 C 1.52998 * 117.49619 * 300.08617 * 19 10 9 22 22 H 0.96993 * 120.00434 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46888 * 59.99817 * 9 7 2 24 24 H 1.09003 * 109.47052 * 300.00426 * 9 7 2 25 25 H 1.09000 * 109.47075 * 65.72288 * 13 11 10 26 26 H 1.09004 * 109.47519 * 305.72639 * 13 11 10 27 27 H 1.09006 * 109.47239 * 54.54114 * 15 14 13 28 28 H 1.09004 * 109.47562 * 174.53327 * 15 14 13 29 29 H 1.34497 * 103.00071 * 179.97438 * 16 15 14 30 30 H 1.08996 * 117.50307 * 0.02562 * 17 14 13 31 31 H 1.09005 * 117.49838 * 145.02281 * 17 14 13 32 32 H 1.09005 * 117.49966 * 252.51318 * 18 17 14 33 33 H 1.09000 * 117.50078 * 107.48676 * 18 17 14 34 34 H 1.09001 * 115.55128 * 154.41816 * 19 10 9 35 35 H 1.09003 * 117.50223 * 0.02562 * 20 19 10 36 36 H 1.09006 * 117.49623 * 145.02380 * 20 19 10 37 37 H 1.09002 * 117.50085 * 214.97617 * 21 19 10 38 38 H 1.09002 * 117.49897 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6411 -4.1249 1.1667 12 8 2.2466 -3.6643 2.2170 13 6 3.6199 -5.2706 1.1667 14 6 3.8421 -5.7516 2.6020 15 6 4.8226 -4.9208 3.4320 16 16 6.4861 -5.0615 2.7224 17 6 3.8023 -7.2599 2.8557 18 6 2.6495 -6.3736 3.3312 19 6 2.6791 -4.1694 -1.2693 20 6 2.3106 -3.4209 -2.5517 21 6 1.6332 -4.7531 -2.2212 22 1 -0.4850 0.8399 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 4.5681 -4.9385 0.7439 26 1 3.2215 -6.0890 0.5668 27 1 4.5113 -3.8762 3.4240 28 1 4.8330 -5.2888 4.4580 29 1 7.2294 -4.2938 3.5391 30 1 3.6183 -7.9096 2.0001 31 1 4.4750 -7.6606 3.6141 32 1 2.5636 -6.1911 4.4024 33 1 1.7066 -6.4400 2.7884 34 1 3.6538 -4.6560 -1.2329 35 1 1.7143 -2.5139 -2.4514 36 1 3.0428 -3.4153 -3.3592 37 1 1.9200 -5.6235 -2.8115 38 1 0.5910 -4.7233 -1.9033 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236609499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:35 Heat of formation + Delta-G solvation = 16.609150 kcal Electronic energy + Delta-G solvation = -19028.331733 eV Core-core repulsion = 16191.956578 eV Total energy + Delta-G solvation = -2836.375155 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53951 -37.77017 -36.35862 -33.18249 -31.94876 -29.76323 -28.54083 -26.68951 -23.01392 -22.33272 -22.00339 -21.62900 -19.65414 -18.04270 -17.08794 -16.67898 -16.36457 -15.51371 -15.23181 -14.74736 -14.50850 -14.09716 -13.81748 -13.78643 -13.17407 -12.81514 -12.35458 -11.89242 -11.61738 -11.51917 -11.39109 -11.15070 -10.96669 -10.85815 -10.59778 -10.56138 -10.44295 -10.22220 -10.10762 -10.01147 -9.64463 -9.49802 -8.72068 -8.41764 -7.97799 -7.47499 -6.02615 -4.06716 1.64834 2.78649 3.32478 3.36642 3.38369 3.44740 3.73693 4.10262 4.41475 4.49057 4.63244 4.83028 4.94354 4.99947 5.27793 5.32247 5.34641 5.41398 5.45337 5.53862 5.71231 5.75089 5.85390 6.00929 6.03702 6.08159 6.16034 6.24399 6.27118 6.47859 6.77592 7.09770 7.46227 7.58191 7.94348 8.25928 8.48207 8.93487 9.15588 9.58125 11.05168 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.006026 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.494344 B = 4645.616431 C = 5259.229876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.573 5.573 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.107 4.107 14 C -0.090 4.090 15 C -0.023 4.023 16 S -0.252 6.252 17 C -0.170 4.170 18 C -0.143 4.143 19 C 0.076 3.924 20 C -0.175 4.175 21 C -0.204 4.204 22 H 0.263 0.737 23 H 0.033 0.967 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.845 -13.744 0.866 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.126 3.874 10 N -0.303 5.303 11 C 0.298 3.702 12 O -0.412 6.412 13 C -0.147 4.147 14 C -0.091 4.091 15 C -0.172 4.172 16 S -0.099 6.099 17 C -0.207 4.207 18 C -0.182 4.182 19 C -0.030 4.030 20 C -0.213 4.213 21 C -0.243 4.243 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.185 -13.524 0.956 15.837 hybrid contribution 0.203 1.829 0.930 2.062 sum 8.387 -11.695 1.887 14.515 Atomic orbital electron populations 1.69918 1.05945 1.27032 1.50650 1.24916 0.94832 0.99083 0.95237 0.86600 0.79541 0.82911 0.78620 1.20204 1.21243 1.20332 1.21381 0.93317 0.90518 1.50649 0.92494 1.19253 0.87605 0.82255 0.98270 1.47753 1.45117 1.34362 1.03052 1.20213 0.82191 0.83922 0.83832 1.90652 1.58156 1.61768 1.30637 1.21315 1.00511 0.97965 0.94918 1.20540 0.99473 0.93807 0.95327 1.22672 0.89980 1.04698 0.99803 1.87303 1.09486 1.67004 1.46154 1.23168 1.02103 0.91881 1.03568 1.22929 0.93093 1.01631 1.00546 1.21507 0.96781 1.01936 0.82807 1.23338 1.03628 0.96975 0.97351 1.23398 0.99246 0.97299 1.04322 0.92730 0.94914 0.93967 0.88108 0.89280 0.88320 0.90075 0.95554 0.88566 0.88563 0.88767 0.88442 0.86541 0.86414 0.88975 0.89028 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.57 9.18 -34.44 -0.32 -14.89 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.25 6.32 4.46 -5.20 -0.02 6.29 16 10 N -0.57 -12.01 2.79 -167.48 -0.47 -12.48 16 11 C 0.51 10.31 7.53 -10.99 -0.08 10.23 16 12 O -0.53 -12.76 14.54 5.56 0.08 -12.68 16 13 C -0.11 -1.58 4.08 -27.89 -0.11 -1.70 16 14 C -0.09 -1.21 0.99 -154.51 -0.15 -1.36 16 15 C -0.02 -0.32 6.11 37.16 0.23 -0.09 16 16 S -0.25 -3.25 25.02 -107.50 -2.69 -5.94 16 17 C -0.17 -1.82 9.90 -26.74 -0.26 -2.08 16 18 C -0.14 -1.83 9.15 -26.73 -0.24 -2.07 16 19 C 0.08 1.26 5.90 -67.93 -0.40 0.86 16 20 C -0.18 -2.88 9.72 -26.70 -0.26 -3.14 16 21 C -0.20 -2.98 10.13 -26.70 -0.27 -3.25 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.03 0.86 6.33 -51.93 -0.33 0.53 16 24 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 25 H 0.10 1.45 7.00 -51.93 -0.36 1.09 16 26 H 0.09 1.13 7.74 -51.93 -0.40 0.73 16 27 H 0.10 1.60 7.60 -51.92 -0.39 1.21 16 28 H 0.08 0.95 8.09 -51.92 -0.42 0.53 16 29 H 0.08 0.99 9.07 97.61 0.89 1.87 16 30 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.12 1.61 6.95 -51.93 -0.36 1.25 16 35 H 0.12 2.36 6.29 -51.93 -0.33 2.04 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -31.14 328.64 -9.00 -40.14 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.60 Total: 4.40 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.00 Total: -9.56 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.27 Total: -38.21 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.69 Total: -5.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.14 -9.00 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236609499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.751 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds