Wall clock time and date at job start Mon Mar 30 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47533 * 240.00388 * 3 2 1 5 5 H 1.48504 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47203 * 119.99868 * 3 2 1 7 7 C 1.37882 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99665 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00243 * 359.97438 * 7 2 1 10 10 N 1.46490 * 109.47337 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00217 * 89.99915 * 10 9 7 12 12 O 1.21282 * 119.99749 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00187 * 179.97438 * 11 10 9 14 14 C 1.53000 * 109.47195 * 185.72289 * 13 11 10 15 15 C 1.52996 * 115.55082 * 279.49802 * 14 13 11 16 16 S 1.81395 * 109.47401 * 294.53571 * 15 14 13 17 17 C 1.52998 * 117.49798 * 133.79083 * 14 13 11 18 18 C 1.52991 * 60.00269 * 252.51187 * 17 14 13 19 19 C 1.46502 * 120.00107 * 270.00127 * 10 9 7 20 20 C 1.52994 * 117.49677 * 8.74412 * 19 10 9 21 21 C 1.52998 * 117.49619 * 300.08617 * 19 10 9 22 22 H 0.96993 * 120.00434 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46888 * 59.99817 * 9 7 2 24 24 H 1.09003 * 109.47052 * 300.00426 * 9 7 2 25 25 H 1.09000 * 109.47075 * 65.72288 * 13 11 10 26 26 H 1.09004 * 109.47519 * 305.72639 * 13 11 10 27 27 H 1.09006 * 109.47239 * 54.54114 * 15 14 13 28 28 H 1.09004 * 109.47562 * 174.53327 * 15 14 13 29 29 H 1.34497 * 103.00071 * 179.97438 * 16 15 14 30 30 H 1.08996 * 117.50307 * 0.02562 * 17 14 13 31 31 H 1.09005 * 117.49838 * 145.02281 * 17 14 13 32 32 H 1.09005 * 117.49966 * 252.51318 * 18 17 14 33 33 H 1.09000 * 117.50078 * 107.48676 * 18 17 14 34 34 H 1.09001 * 115.55128 * 154.41816 * 19 10 9 35 35 H 1.09003 * 117.50223 * 0.02562 * 20 19 10 36 36 H 1.09006 * 117.49623 * 145.02380 * 20 19 10 37 37 H 1.09002 * 117.50085 * 214.97617 * 21 19 10 38 38 H 1.09002 * 117.49897 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6411 -4.1249 1.1667 12 8 2.2466 -3.6643 2.2170 13 6 3.6199 -5.2706 1.1667 14 6 3.8421 -5.7516 2.6020 15 6 4.8226 -4.9208 3.4320 16 16 6.4861 -5.0615 2.7224 17 6 3.8023 -7.2599 2.8557 18 6 2.6495 -6.3736 3.3312 19 6 2.6791 -4.1694 -1.2693 20 6 2.3106 -3.4209 -2.5517 21 6 1.6332 -4.7531 -2.2212 22 1 -0.4850 0.8399 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 4.5681 -4.9385 0.7439 26 1 3.2215 -6.0890 0.5668 27 1 4.5113 -3.8762 3.4240 28 1 4.8330 -5.2888 4.4580 29 1 7.2294 -4.2938 3.5391 30 1 3.6183 -7.9096 2.0001 31 1 4.4750 -7.6606 3.6141 32 1 2.5636 -6.1911 4.4024 33 1 1.7066 -6.4400 2.7884 34 1 3.6538 -4.6560 -1.2329 35 1 1.7143 -2.5139 -2.4514 36 1 3.0428 -3.4153 -3.3592 37 1 1.9200 -5.6235 -2.8115 38 1 0.5910 -4.7233 -1.9033 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236609499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:34 Heat of formation + Delta-G solvation = -1.504675 kcal Electronic energy + Delta-G solvation = -19029.117207 eV Core-core repulsion = 16191.956578 eV Total energy + Delta-G solvation = -2837.160629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99731 -38.97154 -37.78547 -35.20571 -33.70679 -31.16426 -29.77590 -28.45608 -25.00471 -23.40077 -23.19654 -22.97274 -20.86726 -19.47911 -18.57237 -18.22190 -18.02832 -17.07408 -16.43480 -16.35890 -15.79819 -15.60673 -15.19057 -15.06132 -14.55329 -14.32249 -13.81336 -13.49009 -13.35495 -12.94430 -12.73702 -12.66170 -12.40555 -12.24454 -12.18019 -12.16489 -12.07723 -11.60565 -11.46089 -11.37923 -11.13336 -10.73426 -10.63833 -10.24124 -9.17321 -8.98848 -8.20796 -6.34993 0.63691 1.34118 1.37581 1.44975 1.77071 1.90639 2.26272 2.42084 2.99839 3.07900 3.15313 3.62724 3.79329 3.84036 3.89723 4.02346 4.12612 4.21240 4.27457 4.47048 4.61435 4.75942 4.84823 4.89665 4.90421 5.01017 5.07667 5.12718 5.15246 5.22058 5.29931 5.35628 5.44436 5.59044 5.88078 6.08900 6.72393 6.88582 7.30649 7.57579 8.85138 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.006026 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.494344 B = 4645.616431 C = 5259.229876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.265 3.735 10 N -0.583 5.583 11 C 0.501 3.499 12 O -0.584 6.584 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.021 4.021 16 S -0.244 6.244 17 C -0.130 4.130 18 C -0.158 4.158 19 C 0.060 3.940 20 C -0.187 4.187 21 C -0.178 4.178 22 H 0.266 0.734 23 H 0.022 0.978 24 H -0.007 1.007 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -15.671 -0.188 18.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.068 0.932 9 C 0.144 3.856 10 N -0.312 5.312 11 C 0.291 3.709 12 O -0.464 6.464 13 C -0.130 4.130 14 C -0.115 4.115 15 C -0.170 4.170 16 S -0.092 6.092 17 C -0.167 4.167 18 C -0.198 4.198 19 C -0.045 4.045 20 C -0.224 4.224 21 C -0.216 4.216 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.011 0.989 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.173 0.827 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.499 -15.482 -0.132 18.707 hybrid contribution -0.552 2.421 1.269 2.788 sum 9.947 -13.061 1.136 16.457 Atomic orbital electron populations 1.70038 1.07464 1.28037 1.51392 1.25789 0.95711 1.02767 0.94721 0.85566 0.78391 0.78564 0.78895 1.18511 1.20353 1.20576 1.21601 0.92994 0.91834 1.50511 0.93229 1.18618 0.87982 0.83772 0.95234 1.47762 1.44499 1.33438 1.05542 1.21288 0.82263 0.84689 0.82672 1.90620 1.59919 1.63498 1.32353 1.21270 0.98885 0.96207 0.96656 1.20610 1.00129 0.96165 0.94610 1.22579 0.90602 1.02664 1.01108 1.87171 1.08694 1.66917 1.46449 1.23265 0.99735 0.89711 1.04023 1.22925 0.93012 1.03402 1.00441 1.22000 0.99057 1.02665 0.80736 1.23295 1.04473 0.96166 0.98499 1.23438 0.97570 0.97739 1.02862 0.92521 0.96013 0.98889 0.87170 0.86275 0.92015 0.88404 0.95116 0.86502 0.86771 0.88753 0.89906 0.82697 0.90984 0.85694 0.84454 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.01 0.51 5.46 84.66 0.46 0.98 16 3 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.53 -30.92 9.18 25.60 0.24 -30.69 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.27 14.46 4.46 85.63 0.38 14.84 16 10 N -0.58 -24.93 2.79 -802.18 -2.24 -27.17 16 11 C 0.50 20.54 7.53 87.66 0.66 21.20 16 12 O -0.58 -29.30 14.54 -3.04 -0.04 -29.34 16 13 C -0.09 -2.50 4.08 29.85 0.12 -2.38 16 14 C -0.11 -2.87 0.99 -52.18 -0.05 -2.92 16 15 C -0.02 -0.55 6.11 71.98 0.44 -0.11 16 16 S -0.24 -5.83 25.02 -56.49 -1.41 -7.24 16 17 C -0.13 -2.32 9.90 30.59 0.30 -2.02 16 18 C -0.16 -3.90 9.15 30.59 0.28 -3.62 16 19 C 0.06 1.88 5.90 44.99 0.27 2.14 16 20 C -0.19 -5.94 9.72 30.62 0.30 -5.64 16 21 C -0.18 -4.80 10.13 30.62 0.31 -4.49 16 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 23 H 0.02 1.22 6.33 -2.39 -0.02 1.21 16 24 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 25 H 0.11 2.87 7.00 -2.39 -0.02 2.86 16 26 H 0.12 2.57 7.74 -2.38 -0.02 2.55 16 27 H 0.06 2.07 7.60 -2.39 -0.02 2.05 16 28 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 29 H 0.09 1.95 9.07 73.35 0.67 2.62 16 30 H 0.12 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.16 3.67 6.95 -2.39 -0.02 3.65 16 35 H 0.07 3.00 6.29 -2.39 -0.02 2.98 16 36 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 37 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 Total: -1.00 -72.42 328.64 4.04 -68.38 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 1.72 Total: 16.98 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 3.70 Total: -12.71 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.96 Total: -83.81 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.04 Total: -29.34 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.41 Total: -7.24 kcal Total: -72.42 4.04 -68.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236609499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.877 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds