Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48510 * 109.47049 * 274.06489 * 3 2 1 5 5 H 1.48496 * 109.47160 * 34.06581 * 3 2 1 6 6 H 1.48499 * 109.47229 * 154.06825 * 3 2 1 7 7 C 1.37878 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99965 * 353.97888 * 7 2 1 9 9 C 1.50701 * 119.99949 * 173.98655 * 7 2 1 10 10 H 1.09003 * 110.91725 * 338.72611 * 9 7 2 11 11 C 1.55157 * 111.00648 * 102.63264 * 9 7 2 12 12 C 1.54329 * 103.02368 * 153.37789 * 11 9 7 13 13 N 1.47027 * 107.26348 * 338.14217 * 12 11 9 14 14 C 1.34777 * 125.64570 * 178.84752 * 13 12 11 15 15 O 1.21279 * 119.99807 * 184.90860 * 14 13 12 16 16 C 1.50701 * 120.00220 * 4.91438 * 14 13 12 17 17 C 1.52578 * 109.22595 * 145.43273 * 16 14 13 18 18 C 1.53107 * 109.95341 * 190.95176 * 17 16 14 19 19 S 1.81750 * 108.83891 * 296.97718 * 18 17 16 20 20 C 1.81744 * 102.22360 * 53.26612 * 19 18 17 21 21 C 1.52582 * 109.19031 * 266.64839 * 16 14 13 22 22 C 1.47420 * 108.70360 * 358.58134 * 13 12 11 23 23 H 0.96994 * 119.99535 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.71702 * 271.94255 * 11 9 7 25 25 H 1.08998 * 110.71858 * 35.20877 * 11 9 7 26 26 H 1.08999 * 109.99158 * 218.66467 * 12 11 9 27 27 H 1.09003 * 109.78042 * 97.49319 * 12 11 9 28 28 H 1.08999 * 109.22175 * 26.03053 * 16 14 13 29 29 H 1.09006 * 109.39103 * 70.80952 * 17 16 14 30 30 H 1.08999 * 109.39581 * 311.09761 * 17 16 14 31 31 H 1.08999 * 109.57646 * 177.17006 * 18 17 16 32 32 H 1.09004 * 109.57226 * 56.78543 * 18 17 16 33 33 H 1.08997 * 109.57511 * 66.54138 * 20 19 18 34 34 H 1.09000 * 109.57842 * 186.92608 * 20 19 18 35 35 H 1.09000 * 109.38986 * 289.17288 * 21 16 14 36 36 H 1.09002 * 109.38715 * 48.87624 * 21 16 14 37 37 H 1.09000 * 110.36589 * 143.19298 * 22 13 12 38 38 H 1.08994 * 110.36850 * 265.40861 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4108 2.0961 -1.3967 5 1 1.4924 2.6263 0.7842 6 1 3.5871 1.4169 0.6122 7 6 2.0046 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0972 9 6 3.5054 -1.1976 -0.1373 10 1 3.8572 -0.2702 -0.5892 11 6 4.1883 -1.4419 1.2344 12 6 5.5363 -2.0830 0.8425 13 7 5.3735 -2.6531 -0.5029 14 6 6.3323 -3.2830 -1.2103 15 8 6.1121 -3.6366 -2.3493 16 6 7.6781 -3.5480 -0.5860 17 6 8.2198 -4.8767 -1.1048 18 6 9.4448 -5.2963 -0.2878 19 16 10.7561 -4.0592 -0.5190 20 6 9.9033 -2.5109 -0.0964 21 6 8.6267 -2.4050 -0.9349 22 6 3.9862 -2.4274 -0.9474 23 1 -0.4849 0.8400 -0.0004 24 1 4.3448 -0.5000 1.7603 25 1 3.5998 -2.1303 1.8409 26 1 5.7940 -2.8707 1.5503 27 1 6.3169 -1.3223 0.8307 28 1 7.5666 -3.6041 0.4968 29 1 8.5030 -4.7680 -2.1518 30 1 7.4477 -5.6412 -1.0176 31 1 9.7964 -6.2695 -0.6304 32 1 9.1780 -5.3529 0.7675 33 1 9.6455 -2.5132 0.9626 34 1 10.5543 -1.6642 -0.3139 35 1 8.8832 -2.4578 -1.9929 36 1 8.1370 -1.4530 -0.7297 37 1 3.9603 -2.2116 -2.0155 38 1 3.3693 -3.2972 -0.7217 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259721951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -53.134981 kcal Electronic energy + Delta-G solvation = -18924.575280 eV Core-core repulsion = 16085.175793 eV Total energy + Delta-G solvation = -2839.399487 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03462 -37.40392 -36.05878 -33.03028 -31.82121 -31.01660 -28.79175 -28.02313 -25.05986 -23.32240 -22.66850 -21.24816 -19.68617 -18.83035 -17.38524 -17.15471 -16.90444 -15.44929 -15.33050 -14.78251 -14.32080 -14.15849 -13.97667 -13.58972 -13.35598 -13.09109 -12.86327 -12.79700 -12.50498 -12.15392 -11.97641 -11.67958 -11.64422 -11.22350 -11.09617 -10.71291 -10.63431 -10.35022 -10.03970 -9.93443 -9.86639 -9.41521 -9.28947 -8.65218 -8.20755 -7.92210 -6.21752 -4.22057 1.52199 2.27227 2.82249 3.18936 3.27754 3.28712 3.30987 4.29457 4.36828 4.40440 4.59374 4.68088 4.88688 4.95026 5.01931 5.14733 5.21370 5.30006 5.32940 5.40539 5.51087 5.58642 5.70925 5.72931 5.88642 5.98933 6.02090 6.06101 6.39277 6.51814 6.62889 6.68807 6.95194 7.14387 7.57752 7.92093 8.36883 8.43453 8.82938 9.40194 10.90840 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.004351 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.069375 B = 6434.262149 C = 6745.798163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.077 0.923 9 C 0.012 3.988 10 H 0.045 0.955 11 C -0.135 4.135 12 C 0.098 3.902 13 N -0.614 5.614 14 C 0.528 3.472 15 O -0.547 6.547 16 C -0.110 4.110 17 C -0.104 4.104 18 C -0.078 4.078 19 S -0.272 6.272 20 C -0.076 4.076 21 C -0.111 4.111 22 C 0.111 3.889 23 H 0.266 0.734 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.805 -5.505 2.992 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.095 0.905 9 C -0.007 4.007 10 H 0.063 0.937 11 C -0.173 4.173 12 C -0.025 4.025 13 N -0.347 5.347 14 C 0.316 3.684 15 O -0.425 6.425 16 C -0.132 4.132 17 C -0.143 4.143 18 C -0.226 4.226 19 S -0.046 6.046 20 C -0.225 4.225 21 C -0.150 4.150 22 C -0.010 4.010 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.625 -5.765 2.040 20.556 hybrid contribution -0.904 1.138 0.601 1.573 sum 18.721 -4.627 2.642 19.465 Atomic orbital electron populations 1.69907 1.06365 1.27235 1.49444 1.25066 0.94703 0.99104 0.93969 0.86837 0.80357 0.83676 0.78591 1.20257 1.21279 1.18861 1.20799 0.88229 0.94908 1.51007 0.90504 1.20298 0.96750 0.93176 0.90516 0.93723 1.23017 0.93007 0.99995 1.01279 1.22149 1.00195 0.96784 0.83398 1.48776 1.12468 1.55449 1.17975 1.20010 0.84935 0.77767 0.85717 1.90679 1.81422 1.52726 1.17720 1.21272 0.93470 0.96853 1.01592 1.21554 0.96311 0.95603 1.00858 1.23475 0.96079 0.99665 1.03373 1.86865 1.22187 1.04246 1.91345 1.23442 0.99179 0.97140 1.02692 1.21625 0.93793 0.98153 1.01424 1.22591 0.78788 0.99854 0.99751 0.92412 0.91475 0.90750 0.92489 0.92489 0.89302 0.89438 0.90298 0.87438 0.89738 0.89578 0.87403 0.89658 0.90211 0.91424 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 20.34 27.06 -169.99 -4.60 15.74 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -5.71 6.63 56.52 0.37 -5.34 16 7 C -0.51 -13.45 8.94 -34.44 -0.31 -13.75 16 8 H 0.08 2.20 8.05 -52.48 -0.42 1.78 16 9 C 0.01 0.27 2.51 -89.62 -0.22 0.05 16 10 H 0.04 1.00 5.56 -51.93 -0.29 0.71 16 11 C -0.13 -2.43 6.40 -24.89 -0.16 -2.59 16 12 C 0.10 1.45 6.16 -3.06 -0.02 1.43 16 13 N -0.61 -10.66 3.33 -170.52 -0.57 -11.23 16 14 C 0.53 8.78 6.75 -10.98 -0.07 8.71 16 15 O -0.55 -11.08 16.66 5.56 0.09 -10.98 16 16 C -0.11 -1.32 1.88 -92.20 -0.17 -1.49 16 17 C -0.10 -1.15 4.56 -26.89 -0.12 -1.27 16 18 C -0.08 -0.69 6.46 37.21 0.24 -0.45 16 19 S -0.27 -2.76 22.33 -107.50 -2.40 -5.16 16 20 C -0.08 -0.67 6.46 37.21 0.24 -0.43 16 21 C -0.11 -1.18 5.03 -26.90 -0.14 -1.32 16 22 C 0.11 2.28 6.39 -2.53 -0.02 2.26 16 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 25 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 26 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.94 6.91 -51.93 -0.36 0.58 16 29 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 30 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.07 1.46 7.99 -51.93 -0.41 1.04 16 38 H 0.06 1.36 8.03 -51.93 -0.42 0.94 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -30.04 312.76 -8.92 -38.96 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.09 Total: 0.21 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.85 Total: -6.92 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.21 Total: -36.56 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.60 Total: 15.74 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.40 Total: -5.16 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.04 -8.92 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.175 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds