Wall clock time and date at job start Mon Mar 30 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48510 * 109.47049 * 274.06489 * 3 2 1 5 5 H 1.48496 * 109.47160 * 34.06581 * 3 2 1 6 6 H 1.48499 * 109.47229 * 154.06825 * 3 2 1 7 7 C 1.37878 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99965 * 353.97888 * 7 2 1 9 9 C 1.50701 * 119.99949 * 173.98655 * 7 2 1 10 10 H 1.09003 * 110.91725 * 338.72611 * 9 7 2 11 11 C 1.55157 * 111.00648 * 102.63264 * 9 7 2 12 12 C 1.54329 * 103.02368 * 153.37789 * 11 9 7 13 13 N 1.47027 * 107.26348 * 338.14217 * 12 11 9 14 14 C 1.34777 * 125.64570 * 178.84752 * 13 12 11 15 15 O 1.21279 * 119.99807 * 184.90860 * 14 13 12 16 16 C 1.50701 * 120.00220 * 4.91438 * 14 13 12 17 17 C 1.52578 * 109.22595 * 145.43273 * 16 14 13 18 18 C 1.53107 * 109.95341 * 190.95176 * 17 16 14 19 19 S 1.81750 * 108.83891 * 296.97718 * 18 17 16 20 20 C 1.81744 * 102.22360 * 53.26612 * 19 18 17 21 21 C 1.52582 * 109.19031 * 266.64839 * 16 14 13 22 22 C 1.47420 * 108.70360 * 358.58134 * 13 12 11 23 23 H 0.96994 * 119.99535 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.71702 * 271.94255 * 11 9 7 25 25 H 1.08998 * 110.71858 * 35.20877 * 11 9 7 26 26 H 1.08999 * 109.99158 * 218.66467 * 12 11 9 27 27 H 1.09003 * 109.78042 * 97.49319 * 12 11 9 28 28 H 1.08999 * 109.22175 * 26.03053 * 16 14 13 29 29 H 1.09006 * 109.39103 * 70.80952 * 17 16 14 30 30 H 1.08999 * 109.39581 * 311.09761 * 17 16 14 31 31 H 1.08999 * 109.57646 * 177.17006 * 18 17 16 32 32 H 1.09004 * 109.57226 * 56.78543 * 18 17 16 33 33 H 1.08997 * 109.57511 * 66.54138 * 20 19 18 34 34 H 1.09000 * 109.57842 * 186.92608 * 20 19 18 35 35 H 1.09000 * 109.38986 * 289.17288 * 21 16 14 36 36 H 1.09002 * 109.38715 * 48.87624 * 21 16 14 37 37 H 1.09000 * 110.36589 * 143.19298 * 22 13 12 38 38 H 1.08994 * 110.36850 * 265.40861 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4108 2.0961 -1.3967 5 1 1.4924 2.6263 0.7842 6 1 3.5871 1.4169 0.6122 7 6 2.0046 -1.1941 -0.0005 8 1 1.4690 -2.1268 0.0972 9 6 3.5054 -1.1976 -0.1373 10 1 3.8572 -0.2702 -0.5892 11 6 4.1883 -1.4419 1.2344 12 6 5.5363 -2.0830 0.8425 13 7 5.3735 -2.6531 -0.5029 14 6 6.3323 -3.2830 -1.2103 15 8 6.1121 -3.6366 -2.3493 16 6 7.6781 -3.5480 -0.5860 17 6 8.2198 -4.8767 -1.1048 18 6 9.4448 -5.2963 -0.2878 19 16 10.7561 -4.0592 -0.5190 20 6 9.9033 -2.5109 -0.0964 21 6 8.6267 -2.4050 -0.9349 22 6 3.9862 -2.4274 -0.9474 23 1 -0.4849 0.8400 -0.0004 24 1 4.3448 -0.5000 1.7603 25 1 3.5998 -2.1303 1.8409 26 1 5.7940 -2.8707 1.5503 27 1 6.3169 -1.3223 0.8307 28 1 7.5666 -3.6041 0.4968 29 1 8.5030 -4.7680 -2.1518 30 1 7.4477 -5.6412 -1.0176 31 1 9.7964 -6.2695 -0.6304 32 1 9.1780 -5.3529 0.7675 33 1 9.6455 -2.5132 0.9626 34 1 10.5543 -1.6642 -0.3139 35 1 8.8832 -2.4578 -1.9929 36 1 8.1370 -1.4530 -0.7297 37 1 3.9603 -2.2116 -2.0155 38 1 3.3693 -3.2972 -0.7217 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:00 Heat of formation + Delta-G solvation = -71.215474 kcal Electronic energy + Delta-G solvation = -18925.359309 eV Core-core repulsion = 16085.175793 eV Total energy + Delta-G solvation = -2840.183516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33806 -38.78341 -37.17210 -34.94980 -32.80187 -32.47581 -30.21171 -29.11924 -26.76917 -24.10239 -24.07116 -22.28789 -21.36468 -20.06790 -19.26854 -18.32943 -17.87171 -16.87135 -16.59990 -16.15387 -15.68628 -15.38217 -14.92228 -14.73438 -14.49732 -14.30522 -14.06034 -13.92405 -13.77854 -13.50315 -13.30664 -13.14839 -12.93053 -12.46275 -12.34963 -12.12418 -11.99613 -11.76815 -11.55597 -11.44382 -11.16678 -10.99885 -10.69939 -10.55476 -9.62513 -8.67135 -8.31270 -6.36002 0.82915 1.37070 1.38119 1.49624 1.53694 1.58784 1.99517 2.34715 3.00978 3.34834 3.54850 3.75856 3.91553 3.92854 4.02604 4.20589 4.22582 4.25353 4.35077 4.40958 4.48933 4.57115 4.61773 4.73153 4.76480 4.84596 4.88325 4.95246 5.05169 5.09687 5.14642 5.26322 5.35870 5.49250 5.64289 6.27427 6.59872 6.69818 7.10387 7.29396 8.85288 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.004351 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.069375 B = 6434.262149 C = 6745.798163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.014 3.986 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.230 1.230 7 C -0.514 4.514 8 H 0.033 0.967 9 C 0.007 3.993 10 H 0.046 0.954 11 C -0.129 4.129 12 C 0.101 3.899 13 N -0.616 5.616 14 C 0.524 3.476 15 O -0.592 6.592 16 C -0.099 4.099 17 C -0.102 4.102 18 C -0.065 4.065 19 S -0.306 6.306 20 C -0.064 4.064 21 C -0.107 4.107 22 C 0.118 3.882 23 H 0.267 0.733 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.159 -4.689 4.905 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.153 1.153 7 C -0.552 4.552 8 H 0.051 0.949 9 C -0.013 4.013 10 H 0.064 0.936 11 C -0.167 4.167 12 C -0.020 4.020 13 N -0.349 5.349 14 C 0.314 3.686 15 O -0.473 6.473 16 C -0.120 4.120 17 C -0.141 4.141 18 C -0.213 4.213 19 S -0.081 6.081 20 C -0.212 4.212 21 C -0.147 4.147 22 C -0.005 4.005 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 23.023 -4.965 3.983 23.886 hybrid contribution -2.024 0.767 -0.061 2.165 sum 20.999 -4.197 3.922 21.770 Atomic orbital electron populations 1.70064 1.08463 1.28282 1.51816 1.25977 0.95433 1.03239 0.93770 0.85782 0.80384 0.78423 0.78661 1.20356 1.21195 1.15312 1.21032 0.90888 0.93257 1.50058 0.94853 1.20217 0.93976 0.93633 0.93463 0.93608 1.22865 0.94361 1.01047 0.98464 1.22308 0.98892 0.98523 0.82289 1.48831 1.11026 1.55872 1.19122 1.20924 0.86134 0.76376 0.85144 1.90662 1.82389 1.54301 1.19941 1.21300 0.90414 0.97691 1.02574 1.21508 0.97170 0.95180 1.00266 1.23442 0.94271 0.99594 1.03982 1.87066 1.23383 1.05913 1.91713 1.23450 0.97919 0.96487 1.03311 1.21594 0.94446 0.97684 1.00953 1.22201 0.81128 0.98766 0.98423 0.92399 0.89943 0.91546 0.88996 0.89205 0.86606 0.91402 0.90825 0.86402 0.87820 0.87480 0.86092 0.91382 0.89630 0.93520 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.41 13.96 21.45 0.30 -57.11 16 2 C 0.01 0.75 5.47 84.65 0.46 1.22 16 3 Si 0.94 41.41 27.06 68.60 1.86 43.27 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.23 -8.77 6.63 99.48 0.66 -8.12 16 7 C -0.51 -27.83 8.94 25.60 0.23 -27.60 16 8 H 0.03 2.03 8.05 -2.91 -0.02 2.01 16 9 C 0.01 0.29 2.51 -10.15 -0.03 0.27 16 10 H 0.05 1.96 5.56 -2.39 -0.01 1.94 16 11 C -0.13 -4.28 6.40 31.78 0.20 -4.08 16 12 C 0.10 2.55 6.16 86.73 0.53 3.08 16 13 N -0.62 -20.11 3.33 -811.78 -2.70 -22.81 16 14 C 0.52 16.58 6.75 87.66 0.59 17.17 16 15 O -0.59 -24.10 16.66 -3.03 -0.05 -24.15 16 16 C -0.10 -2.04 1.88 -11.82 -0.02 -2.06 16 17 C -0.10 -2.03 4.56 30.49 0.14 -1.90 16 18 C -0.07 -0.95 6.46 72.02 0.46 -0.49 16 19 S -0.31 -5.32 22.33 -56.49 -1.26 -6.58 16 20 C -0.06 -0.86 6.46 72.01 0.46 -0.39 16 21 C -0.11 -1.93 5.03 30.49 0.15 -1.78 16 22 C 0.12 4.86 6.39 86.86 0.55 5.41 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H 0.08 2.51 7.99 -2.39 -0.02 2.49 16 25 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 26 H 0.09 1.76 7.72 -2.39 -0.02 1.74 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.12 1.82 6.91 -2.39 -0.02 1.80 16 29 H 0.07 1.63 8.05 -2.38 -0.02 1.61 16 30 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 36 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 37 H 0.05 2.08 7.99 -2.39 -0.02 2.06 16 38 H 0.05 2.13 8.03 -2.39 -0.02 2.11 16 Total: -1.00 -69.11 312.76 2.88 -66.23 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.98 Total: 12.30 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.75 Total: -11.15 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -2.40 Total: -79.93 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.86 Total: 43.27 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.26 Total: -6.58 kcal Total: -69.11 2.88 -66.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.981 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds