Wall clock time and date at job start Mon Mar 30 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48494 * 109.47405 * 90.00222 * 3 2 1 5 5 H 1.48506 * 109.47104 * 210.00043 * 3 2 1 6 6 H 1.48499 * 109.47510 * 329.99651 * 3 2 1 7 7 C 1.39846 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00493 * 11.02176 * 7 2 1 9 9 C 1.41421 * 119.99930 * 191.02001 * 7 2 1 10 10 N 1.32773 * 126.56005 * 8.35111 * 9 7 2 11 11 N 1.28464 * 109.96517 * 179.97438 * 10 9 7 12 12 H 0.97001 * 124.86043 * 179.97438 * 11 10 9 13 13 C 1.35943 * 110.27550 * 359.97438 * 11 10 9 14 14 Cl 1.73605 * 126.32838 * 180.02562 * 13 11 10 15 15 C 1.35219 * 107.34699 * 359.72575 * 13 11 10 16 16 C 1.50701 * 127.23492 * 180.28210 * 15 13 11 17 17 C 1.53002 * 109.47188 * 270.16074 * 16 15 13 18 18 H 1.09007 * 109.50256 * 54.99966 * 17 16 15 19 19 C 1.53118 * 109.50687 * 175.07914 * 17 16 15 20 20 C 1.53115 * 109.16275 * 177.59788 * 19 17 16 21 21 C 1.53042 * 109.27937 * 302.34927 * 20 19 17 22 22 N 1.46844 * 109.52499 * 59.17656 * 21 20 19 23 23 C 1.46853 * 111.23086 * 298.27797 * 22 21 20 24 24 H 0.96999 * 120.00110 * 174.81147 * 1 2 3 25 25 H 1.08995 * 109.47790 * 30.16036 * 16 15 13 26 26 H 1.09003 * 109.47283 * 150.16783 * 16 15 13 27 27 H 1.08998 * 109.52032 * 297.50288 * 19 17 16 28 28 H 1.09000 * 109.51896 * 57.62983 * 19 17 16 29 29 H 1.09005 * 109.50236 * 62.28493 * 20 19 17 30 30 H 1.08997 * 109.50645 * 182.36776 * 20 19 17 31 31 H 1.08999 * 109.46190 * 179.19755 * 21 20 19 32 32 H 1.09004 * 109.45862 * 299.16006 * 21 20 19 33 33 H 1.00902 * 111.00111 * 62.35907 * 22 21 20 34 34 H 1.08998 * 109.43206 * 301.68656 * 23 22 21 35 35 H 1.09002 * 109.49344 * 181.71541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0465 1.4000 5 1 3.5405 1.4402 -0.7001 6 1 1.4404 2.6527 -0.7001 7 6 2.0081 -1.2111 -0.0005 8 1 1.4831 -2.1378 -0.1798 9 6 3.4028 -1.2225 0.2336 10 7 4.1487 -0.1935 0.6178 11 7 5.3744 -0.5597 0.7350 12 1 6.1033 0.0210 1.0039 13 6 5.5037 -1.8777 0.4281 14 17 6.9749 -2.7991 0.4491 15 6 4.2735 -2.3401 0.1099 16 6 3.9034 -3.7438 -0.2947 17 6 4.0129 -3.8823 -1.8145 18 1 5.0117 -3.5867 -2.1358 19 6 3.7569 -5.3378 -2.2151 20 6 3.8090 -5.4558 -3.7408 21 6 2.7744 -4.5108 -4.3563 22 7 3.0631 -3.1313 -3.9439 23 6 2.9730 -2.9822 -2.4858 24 1 -0.4850 -0.8366 -0.0760 25 1 4.5810 -4.4506 0.1842 26 1 2.8800 -3.9538 0.0164 27 1 4.5218 -5.9769 -1.7740 28 1 2.7743 -5.6463 -1.8582 29 1 4.8044 -5.1847 -4.0929 30 1 3.5859 -6.4815 -4.0343 31 1 2.8188 -4.5819 -5.4430 32 1 1.7780 -4.7910 -4.0146 33 1 3.9662 -2.8343 -4.2822 34 1 1.9755 -3.2689 -2.1529 35 1 3.1620 -1.9437 -2.2140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259884317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:09 Heat of formation + Delta-G solvation = 31.773495 kcal Electronic energy + Delta-G solvation = -19099.033084 eV Core-core repulsion = 16157.731455 eV Total energy + Delta-G solvation = -2941.301629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.99310 -38.53401 -36.21705 -33.87053 -33.20811 -31.28985 -30.23607 -29.17396 -25.79660 -25.12680 -23.16434 -21.74144 -20.48263 -19.72003 -18.76121 -17.69397 -17.25289 -15.58764 -14.86117 -14.46170 -14.40140 -14.02349 -13.60864 -13.44240 -13.32083 -12.44446 -12.23153 -11.97128 -11.81554 -11.60716 -11.56046 -11.26760 -10.97992 -10.86248 -10.74682 -10.67421 -10.39024 -10.12624 -9.85711 -9.48267 -9.03981 -8.56716 -8.02466 -7.89025 -7.59602 -6.99611 -4.40716 2.33440 2.86128 3.47384 3.55939 3.91530 4.04581 4.30826 4.51566 4.71018 4.99333 5.15782 5.21642 5.41381 5.43133 5.65564 5.77451 5.90584 5.91759 6.02742 6.12275 6.20535 6.23799 6.35552 6.37131 6.49512 6.52651 6.78732 6.96020 7.08694 7.23197 7.47316 7.77394 7.82470 8.00491 8.43259 8.55673 9.00844 9.58591 10.37199 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.009290 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.252527 B = 3013.117170 C = 4451.411207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.052 3.948 3 Si 1.099 2.901 4 H -0.287 1.287 5 H -0.261 1.261 6 H -0.311 1.311 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.206 3.794 10 N -0.403 5.403 11 N -0.422 5.422 12 H 0.424 0.576 13 C 0.061 3.939 14 Cl -0.055 7.055 15 C -0.225 4.225 16 C -0.014 4.014 17 C -0.111 4.111 18 H 0.061 0.939 19 C -0.115 4.115 20 C -0.155 4.155 21 C 0.056 3.944 22 N -0.687 5.687 23 C 0.068 3.932 24 H 0.279 0.721 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.333 0.667 34 H 0.071 0.929 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 -7.881 -4.117 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.167 4.167 3 Si 0.929 3.071 4 H -0.213 1.213 5 H -0.187 1.187 6 H -0.241 1.241 7 C -0.530 4.530 8 H 0.100 0.900 9 C 0.061 3.939 10 N -0.240 5.240 11 N -0.131 5.131 12 H 0.265 0.735 13 C -0.092 4.092 14 Cl -0.027 7.027 15 C -0.240 4.240 16 C -0.054 4.054 17 C -0.131 4.131 18 H 0.079 0.921 19 C -0.153 4.153 20 C -0.195 4.195 21 C -0.074 4.074 22 N -0.314 5.314 23 C -0.061 4.061 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.386 -5.013 -3.886 10.514 hybrid contribution 1.712 -2.967 0.334 3.442 sum 10.098 -7.981 -3.552 13.352 Atomic orbital electron populations 1.70633 1.07813 1.32342 1.35552 1.27013 0.95525 1.04505 0.89611 0.82997 0.74256 0.71878 0.77922 1.21326 1.18655 1.24096 1.19618 0.89385 0.96283 1.47687 0.90045 1.19263 0.94085 0.86554 0.94008 1.73578 0.89348 1.25427 1.35676 1.42950 1.08320 1.05675 1.56117 0.73525 1.21747 0.87812 0.86641 1.12990 1.98299 1.35108 1.71515 1.97794 1.19731 0.90479 0.97806 1.15961 1.19554 1.00897 0.91497 0.93406 1.21823 0.99970 0.94749 0.96596 0.92095 1.21635 1.01562 0.97116 0.94962 1.22256 1.00143 1.00312 0.96756 1.21999 0.98444 0.87892 0.99027 1.60723 1.36133 1.20981 1.13602 1.22207 0.98254 1.01259 0.84415 0.90955 0.92940 0.91500 0.92573 0.92028 0.92466 0.92178 0.91588 0.91217 0.85021 0.91077 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.27 13.66 55.54 0.76 -22.52 16 2 C 0.05 1.41 5.51 -17.35 -0.10 1.31 16 3 Si 1.10 26.92 26.42 -169.99 -4.49 22.42 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.26 -6.32 6.24 56.52 0.35 -5.96 16 6 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.49 -12.83 8.22 -37.77 -0.31 -13.14 16 8 H 0.08 2.16 7.34 -52.49 -0.39 1.77 16 9 C 0.21 5.06 5.60 -84.72 -0.47 4.58 16 10 N -0.40 -9.68 7.52 32.33 0.24 -9.44 16 11 N -0.42 -8.51 6.86 32.88 0.23 -8.29 16 12 H 0.42 6.97 8.96 -190.44 -1.71 5.26 16 13 C 0.06 1.19 7.86 -16.80 -0.13 1.06 16 14 Cl -0.05 -0.85 29.06 -51.86 -1.51 -2.36 16 15 C -0.23 -4.75 4.90 -104.17 -0.51 -5.26 16 16 C -0.01 -0.26 4.93 -27.88 -0.14 -0.40 16 17 C -0.11 -1.80 2.32 -90.54 -0.21 -2.01 16 18 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 19 C -0.12 -1.58 5.29 -26.61 -0.14 -1.72 16 20 C -0.16 -1.89 6.08 -26.65 -0.16 -2.05 16 21 C 0.06 0.75 6.56 -3.83 -0.03 0.72 16 22 N -0.69 -10.94 6.87 -113.81 -0.78 -11.72 16 23 C 0.07 1.23 4.90 -3.83 -0.02 1.21 16 24 H 0.28 7.53 8.73 -40.82 -0.36 7.17 16 25 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 26 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.33 4.91 8.86 -39.29 -0.35 4.57 16 34 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 35 H 0.10 2.07 5.97 -51.93 -0.31 1.76 16 LS Contribution 293.50 15.07 4.42 4.42 Total: -1.00 -27.87 293.50 -9.48 -37.35 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.14 Total: 5.81 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -2.22 Total: -15.70 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.45 Total: -51.96 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -4.49 Total: 22.42 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.51 Total: -2.36 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.87 -9.48 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.127 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds