Wall clock time and date at job start Mon Mar 30 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48494 * 109.47405 * 90.00222 * 3 2 1 5 5 H 1.48506 * 109.47104 * 210.00043 * 3 2 1 6 6 H 1.48499 * 109.47510 * 329.99651 * 3 2 1 7 7 C 1.39846 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00493 * 11.02176 * 7 2 1 9 9 C 1.41421 * 119.99930 * 191.02001 * 7 2 1 10 10 N 1.32773 * 126.56005 * 8.35111 * 9 7 2 11 11 N 1.28464 * 109.96517 * 179.97438 * 10 9 7 12 12 H 0.97001 * 124.86043 * 179.97438 * 11 10 9 13 13 C 1.35943 * 110.27550 * 359.97438 * 11 10 9 14 14 Cl 1.73605 * 126.32838 * 180.02562 * 13 11 10 15 15 C 1.35219 * 107.34699 * 359.72575 * 13 11 10 16 16 C 1.50701 * 127.23492 * 180.28210 * 15 13 11 17 17 C 1.53002 * 109.47188 * 270.16074 * 16 15 13 18 18 H 1.09007 * 109.50256 * 54.99966 * 17 16 15 19 19 C 1.53118 * 109.50687 * 175.07914 * 17 16 15 20 20 C 1.53115 * 109.16275 * 177.59788 * 19 17 16 21 21 C 1.53042 * 109.27937 * 302.34927 * 20 19 17 22 22 N 1.46844 * 109.52499 * 59.17656 * 21 20 19 23 23 C 1.46853 * 111.23086 * 298.27797 * 22 21 20 24 24 H 0.96999 * 120.00110 * 174.81147 * 1 2 3 25 25 H 1.08995 * 109.47790 * 30.16036 * 16 15 13 26 26 H 1.09003 * 109.47283 * 150.16783 * 16 15 13 27 27 H 1.08998 * 109.52032 * 297.50288 * 19 17 16 28 28 H 1.09000 * 109.51896 * 57.62983 * 19 17 16 29 29 H 1.09005 * 109.50236 * 62.28493 * 20 19 17 30 30 H 1.08997 * 109.50645 * 182.36776 * 20 19 17 31 31 H 1.08999 * 109.46190 * 179.19755 * 21 20 19 32 32 H 1.09004 * 109.45862 * 299.16006 * 21 20 19 33 33 H 1.00902 * 111.00111 * 62.35907 * 22 21 20 34 34 H 1.08998 * 109.43206 * 301.68656 * 23 22 21 35 35 H 1.09002 * 109.49344 * 181.71541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0465 1.4000 5 1 3.5405 1.4402 -0.7001 6 1 1.4404 2.6527 -0.7001 7 6 2.0081 -1.2111 -0.0005 8 1 1.4831 -2.1378 -0.1798 9 6 3.4028 -1.2225 0.2336 10 7 4.1487 -0.1935 0.6178 11 7 5.3744 -0.5597 0.7350 12 1 6.1033 0.0210 1.0039 13 6 5.5037 -1.8777 0.4281 14 17 6.9749 -2.7991 0.4491 15 6 4.2735 -2.3401 0.1099 16 6 3.9034 -3.7438 -0.2947 17 6 4.0129 -3.8823 -1.8145 18 1 5.0117 -3.5867 -2.1358 19 6 3.7569 -5.3378 -2.2151 20 6 3.8090 -5.4558 -3.7408 21 6 2.7744 -4.5108 -4.3563 22 7 3.0631 -3.1313 -3.9439 23 6 2.9730 -2.9822 -2.4858 24 1 -0.4850 -0.8366 -0.0760 25 1 4.5810 -4.4506 0.1842 26 1 2.8800 -3.9538 0.0164 27 1 4.5218 -5.9769 -1.7740 28 1 2.7743 -5.6463 -1.8582 29 1 4.8044 -5.1847 -4.0929 30 1 3.5859 -6.4815 -4.0343 31 1 2.8188 -4.5819 -5.4430 32 1 1.7780 -4.7910 -4.0146 33 1 3.9662 -2.8343 -4.2822 34 1 1.9755 -3.2689 -2.1529 35 1 3.1620 -1.9437 -2.2140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259884317.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:09 Heat of formation + Delta-G solvation = 12.961732 kcal Electronic energy + Delta-G solvation = -19099.848823 eV Core-core repulsion = 16157.731455 eV Total energy + Delta-G solvation = -2942.117369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.74478 -39.79075 -37.66306 -35.66794 -34.82223 -32.59107 -31.90649 -30.73388 -27.56266 -26.73488 -24.45290 -23.03660 -22.19758 -21.06498 -20.43000 -19.61544 -18.93936 -16.85418 -16.32214 -16.08286 -15.75934 -15.52892 -15.45104 -14.78102 -14.60425 -14.19986 -14.03824 -13.36126 -13.22226 -13.09911 -12.97465 -12.66897 -12.62125 -12.36394 -12.10826 -12.07855 -11.82631 -11.55404 -11.40861 -11.19075 -11.01643 -10.43069 -9.84589 -9.33384 -9.09528 -9.06306 -6.41535 0.78136 1.20471 1.50933 1.57756 1.97657 2.11128 2.42764 2.85081 3.40120 3.49459 3.85148 3.96263 4.07423 4.19258 4.40412 4.49480 4.55512 4.61667 4.71164 4.79965 4.86964 4.99940 5.08134 5.09794 5.16870 5.27167 5.38186 5.42062 5.52170 5.60865 5.75000 6.19638 6.21422 6.49171 6.58283 6.69342 7.03429 7.75720 8.30369 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.009290 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.252527 B = 3013.117170 C = 4451.411207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.015 3.985 3 Si 1.134 2.866 4 H -0.287 1.287 5 H -0.258 1.258 6 H -0.310 1.310 7 C -0.498 4.498 8 H 0.063 0.937 9 C 0.184 3.816 10 N -0.417 5.417 11 N -0.414 5.414 12 H 0.442 0.558 13 C 0.071 3.929 14 Cl -0.009 7.009 15 C -0.235 4.235 16 C -0.012 4.012 17 C -0.099 4.099 18 H 0.063 0.937 19 C -0.112 4.112 20 C -0.147 4.147 21 C 0.054 3.946 22 N -0.699 5.699 23 C 0.081 3.919 24 H 0.273 0.727 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.341 0.659 34 H 0.044 0.956 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.048 -9.341 -4.717 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.197 4.197 3 Si 0.962 3.038 4 H -0.214 1.214 5 H -0.184 1.184 6 H -0.240 1.240 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.037 3.963 10 N -0.254 5.254 11 N -0.125 5.125 12 H 0.286 0.714 13 C -0.083 4.083 14 Cl 0.019 6.981 15 C -0.248 4.248 16 C -0.051 4.051 17 C -0.120 4.120 18 H 0.081 0.919 19 C -0.150 4.150 20 C -0.186 4.186 21 C -0.075 4.075 22 N -0.327 5.327 23 C -0.048 4.048 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.063 0.937 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.254 -6.482 -4.487 13.741 hybrid contribution 1.041 -2.610 0.531 2.860 sum 12.295 -9.092 -3.956 15.795 Atomic orbital electron populations 1.70678 1.08344 1.31925 1.38829 1.27795 0.95757 1.06621 0.89566 0.82531 0.73548 0.69969 0.77715 1.21351 1.18405 1.24030 1.19504 0.90521 0.95369 1.48343 0.91876 1.19312 0.93942 0.88287 0.94799 1.73425 0.90927 1.26018 1.35010 1.42975 1.07752 1.06530 1.55278 0.71424 1.21771 0.89246 0.86394 1.10863 1.98320 1.31991 1.70225 1.97553 1.20006 0.90592 0.98376 1.15873 1.19594 1.00237 0.90285 0.94956 1.21681 0.99103 0.96320 0.94886 0.91880 1.21618 1.01851 0.95048 0.96464 1.22186 1.00045 1.01237 0.95125 1.22087 0.98445 0.86570 1.00387 1.60637 1.36857 1.23296 1.11952 1.21825 0.97464 0.99273 0.86272 0.91677 0.90942 0.93313 0.90789 0.92614 0.91536 0.89814 0.89416 0.92239 0.84133 0.93732 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.48 13.66 21.81 0.30 -50.18 16 2 C 0.02 0.86 5.51 85.22 0.47 1.33 16 3 Si 1.13 55.75 26.42 68.60 1.81 57.56 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.26 -12.39 6.24 99.48 0.62 -11.77 16 6 H -0.31 -15.01 7.11 99.48 0.71 -14.31 16 7 C -0.50 -27.15 8.22 23.44 0.19 -26.96 16 8 H 0.06 3.57 7.34 -2.91 -0.02 3.55 16 9 C 0.18 9.12 5.60 40.77 0.23 9.34 16 10 N -0.42 -19.73 7.52 -51.61 -0.39 -20.12 16 11 N -0.41 -15.87 6.86 -49.88 -0.34 -16.21 16 12 H 0.44 13.33 8.96 -219.99 -1.97 11.36 16 13 C 0.07 2.60 7.86 83.36 0.65 3.25 16 14 Cl -0.01 -0.24 29.06 -2.72 -0.08 -0.31 16 15 C -0.23 -9.73 4.90 -19.57 -0.10 -9.83 16 16 C -0.01 -0.41 4.93 29.85 0.15 -0.26 16 17 C -0.10 -3.11 2.32 -10.74 -0.02 -3.13 16 18 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 19 C -0.11 -2.79 5.29 30.67 0.16 -2.63 16 20 C -0.15 -3.08 6.08 30.65 0.19 -2.89 16 21 C 0.05 1.34 6.56 86.33 0.57 1.91 16 22 N -0.70 -21.84 6.87 -513.98 -3.53 -25.37 16 23 C 0.08 3.01 4.90 86.33 0.42 3.44 16 24 H 0.27 15.58 8.73 -92.71 -0.81 14.77 16 25 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 26 H 0.05 1.89 7.73 -2.39 -0.02 1.88 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.34 9.63 8.86 -89.69 -0.79 8.83 16 34 H 0.04 1.85 7.87 -2.39 -0.02 1.83 16 35 H 0.06 2.50 5.97 -2.39 -0.01 2.48 16 Total: -1.00 -61.34 293.50 -1.09 -62.43 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -1.77 Total: 18.65 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 2.91 Total: -26.44 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.96 Total: -111.89 kcal Atomic # 14 Polarization: 55.75 SS G_CDS: 1.81 Total: 57.56 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.31 kcal Total: -61.34 -1.09 -62.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884317.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.390 kcal (2) G-P(sol) polarization free energy of solvation -61.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds