Wall clock time and date at job start Mon Mar 30 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48497 * 109.47454 * 269.99841 * 3 2 1 5 5 H 1.48493 * 109.47198 * 30.00185 * 3 2 1 6 6 H 1.48504 * 109.46980 * 149.99920 * 3 2 1 7 7 C 1.37884 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00017 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64121 * 56.85609 * 9 7 2 11 11 C 1.55159 * 110.71952 * 293.52375 * 9 7 2 12 12 C 1.55129 * 101.48377 * 205.97066 * 11 9 7 13 13 N 1.47421 * 104.72458 * 37.29063 * 12 11 9 14 14 C 1.34784 * 125.64843 * 155.81647 * 13 12 11 15 15 O 1.21279 * 119.99925 * 179.69439 * 14 13 12 16 16 C 1.50700 * 119.99961 * 359.69671 * 14 13 12 17 17 H 1.09011 * 109.38697 * 300.00268 * 16 14 13 18 18 C 1.52574 * 109.39302 * 180.19860 * 16 14 13 19 19 C 1.52622 * 110.70573 * 169.07376 * 18 16 14 20 20 C 1.53103 * 109.86958 * 70.82164 * 19 18 16 21 21 S 1.81750 * 108.83985 * 296.93614 * 20 19 18 22 22 C 1.53100 * 109.39041 * 59.79858 * 16 14 13 23 23 C 1.47018 * 108.70379 * 335.55582 * 13 12 11 24 24 H 0.97003 * 119.99524 * 0.02562 * 1 2 3 25 25 H 1.09004 * 111.00410 * 324.20795 * 11 9 7 26 26 H 1.08993 * 111.00686 * 88.02142 * 11 9 7 27 27 H 1.09005 * 110.49746 * 278.45477 * 12 11 9 28 28 H 1.08997 * 110.34301 * 156.05884 * 12 11 9 29 29 H 1.09000 * 109.22444 * 289.49877 * 18 16 14 30 30 H 1.09006 * 109.22526 * 48.85097 * 18 16 14 31 31 H 1.08996 * 109.46260 * 310.67917 * 19 18 16 32 32 H 1.08998 * 109.39979 * 190.91854 * 19 18 16 33 33 H 1.08994 * 109.57564 * 177.12967 * 20 19 18 34 34 H 1.08998 * 109.57631 * 56.74564 * 20 19 18 35 35 H 1.08999 * 109.57653 * 302.97985 * 22 16 14 36 36 H 1.08999 * 109.57303 * 63.36955 * 22 16 14 37 37 H 1.09010 * 109.88204 * 120.70275 * 23 13 12 38 38 H 1.09004 * 109.88434 * 241.70985 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.5762 -2.5525 -0.8561 11 6 0.4744 -2.6858 1.3285 12 6 0.3764 -4.2316 1.4147 13 7 1.6647 -4.7186 0.8889 14 6 2.2298 -5.9087 1.1734 15 8 3.2951 -6.2082 0.6770 16 6 1.5380 -6.8671 2.1082 17 1 1.4118 -6.3947 3.0825 18 6 2.3861 -8.1261 2.2617 19 6 1.8580 -8.9972 3.3983 20 6 0.5251 -9.6313 2.9918 21 16 -0.6944 -8.3112 2.7207 22 6 0.1645 -7.2309 1.5381 23 6 2.2279 -3.6937 -0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 1.0363 -2.2791 2.1694 26 1 -0.5164 -2.2354 1.2690 27 1 -0.4465 -4.5968 0.8000 28 1 0.2461 -4.5459 2.4502 29 1 2.3593 -8.6926 1.3309 30 1 3.4157 -7.8412 2.4781 31 1 1.7109 -8.3841 4.2874 32 1 2.5806 -9.7831 3.6178 33 1 0.1777 -10.2919 3.7861 34 1 0.6572 -10.2010 2.0720 35 1 -0.4185 -6.3232 1.3827 36 1 0.2895 -7.7539 0.5900 37 1 3.2026 -3.3757 0.3681 38 1 2.3275 -4.0939 -1.0112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:36 Heat of formation + Delta-G solvation = -52.498009 kcal Electronic energy + Delta-G solvation = -18925.205327 eV Core-core repulsion = 16085.833461 eV Total energy + Delta-G solvation = -2839.371866 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91588 -37.19933 -36.07672 -33.19797 -32.01011 -30.13016 -28.44463 -27.34057 -25.34135 -23.91125 -22.18027 -21.08723 -19.76309 -18.82392 -17.22080 -16.59691 -16.24525 -15.67089 -15.05847 -14.94090 -14.55435 -14.41195 -13.72470 -13.37164 -13.29966 -12.95044 -12.66963 -12.52105 -12.11376 -11.74172 -11.53600 -11.41984 -11.26175 -11.09415 -11.03972 -10.94694 -10.78147 -10.51645 -9.96167 -9.86258 -9.54711 -9.26715 -9.02411 -8.52219 -8.06665 -7.84318 -6.14207 -4.17472 1.58767 2.29444 2.96947 3.25697 3.32804 3.35732 3.47809 4.36127 4.49569 4.54220 4.61065 4.71784 4.88615 5.03463 5.19356 5.22968 5.30227 5.47662 5.50372 5.58193 5.66923 5.71956 5.81336 5.92996 5.98370 6.12357 6.19766 6.27051 6.59829 6.76824 6.94345 7.05036 7.40327 7.65211 7.84386 8.05251 8.24360 8.53107 8.84356 9.47703 10.95777 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.004271 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.950333 B = 6554.299079 C = 7012.283709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.044 3.956 10 H 0.043 0.957 11 C -0.110 4.110 12 C 0.087 3.913 13 N -0.607 5.607 14 C 0.526 3.474 15 O -0.552 6.552 16 C -0.102 4.102 17 H 0.106 0.894 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.085 4.085 21 S -0.260 6.260 22 C -0.080 4.080 23 C 0.110 3.890 24 H 0.262 0.738 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -15.576 6.445 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.025 3.975 10 H 0.061 0.939 11 C -0.148 4.148 12 C -0.035 4.035 13 N -0.339 5.339 14 C 0.312 3.688 15 O -0.432 6.432 16 C -0.125 4.125 17 H 0.124 0.876 18 C -0.148 4.148 19 C -0.160 4.160 20 C -0.233 4.233 21 S -0.033 6.033 22 C -0.228 4.228 23 C -0.011 4.011 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.949 -15.578 6.642 17.046 hybrid contribution 1.469 0.843 -0.542 1.778 sum -0.481 -14.735 6.101 15.955 Atomic orbital electron populations 1.69936 1.05918 1.26836 1.49926 1.24948 0.94878 0.99156 0.94678 0.86560 0.79888 0.83181 0.78214 1.20586 1.21180 1.19833 1.21028 0.92926 0.89847 1.51646 0.92269 1.19723 0.92733 0.91049 0.94006 0.93910 1.22825 1.02457 0.88943 1.00623 1.22716 0.84807 0.98539 0.97443 1.48746 1.22362 1.16151 1.46621 1.20038 0.85240 0.81273 0.82248 1.90658 1.22556 1.76126 1.53821 1.21475 0.94526 0.96437 1.00099 0.87601 1.21350 1.00204 0.94296 0.98964 1.21760 0.95428 0.99591 0.99177 1.23498 0.96741 0.98051 1.05000 1.86911 1.28303 1.28005 1.60060 1.23634 0.97420 1.02363 0.99405 1.22369 0.98981 0.88156 0.91643 0.92833 0.92039 0.89925 0.92063 0.91879 0.91261 0.89851 0.90453 0.90503 0.87835 0.89835 0.86308 0.89437 0.92037 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 12.50 55.43 0.69 -23.42 16 2 C 0.07 1.74 5.36 -17.82 -0.10 1.64 16 3 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.52 8.47 -34.44 -0.29 -13.81 16 8 H 0.06 1.55 7.53 -52.48 -0.40 1.16 16 9 C 0.04 1.03 2.78 -89.94 -0.25 0.78 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.30 5.96 -24.46 -0.15 -2.44 16 12 C 0.09 1.47 5.14 -2.41 -0.01 1.45 16 13 N -0.61 -11.23 3.32 -170.38 -0.57 -11.80 16 14 C 0.53 9.25 7.20 -10.98 -0.08 9.17 16 15 O -0.55 -11.49 16.10 5.56 0.09 -11.40 16 16 C -0.10 -1.35 1.73 -91.94 -0.16 -1.51 16 17 H 0.11 1.34 7.76 -51.92 -0.40 0.93 16 18 C -0.11 -1.28 4.37 -27.14 -0.12 -1.40 16 19 C -0.12 -1.07 5.76 -26.87 -0.15 -1.22 16 20 C -0.08 -0.74 6.45 37.21 0.24 -0.50 16 21 S -0.26 -2.93 22.33 -107.50 -2.40 -5.33 16 22 C -0.08 -0.97 5.56 37.21 0.21 -0.77 16 23 C 0.11 2.34 6.45 -3.07 -0.02 2.32 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 26 H 0.08 1.82 7.77 -51.93 -0.40 1.42 16 27 H 0.06 0.95 7.02 -51.93 -0.36 0.59 16 28 H 0.06 0.92 7.36 -51.93 -0.38 0.53 16 29 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 30 H 0.08 1.06 7.70 -51.93 -0.40 0.66 16 31 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 1.49 4.89 -51.93 -0.25 1.23 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.39 7.63 -51.92 -0.40 0.99 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -28.43 309.33 -9.35 -37.78 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.92 Total: 0.23 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.88 Total: -6.28 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.13 Total: -35.22 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.40 Total: -5.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.43 -9.35 -37.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.719 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds